BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m4*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv1-miR-M4-3p MIMAT0003925 Mareks disease miR-M4-3p 16 6.9
oha-miR-218-2-3p MIMAT0036838 Ophiophagus hannah miR-218-2-3p 14 27
ssa-miR-15c-2-3p MIMAT0032400 Salmo salar miR-15c-2-3p 14 27
prd-miR-7907b-3p MIMAT0030673 Panagrellus redivivus miR-7907b-3p 14 27
mdo-miR-218-2-3p MIMAT0031111 Monodelphis domestica miR-218-2-3p 14 27
gga-miR-6662-3p MIMAT0025763 Gallus gallus miR-6662-3p 14 27
rmi-miR-5327 MIMAT0021400 Rhipicephalus microplus miR-5327 14 27
ssc-miR-218-3p MIMAT0017969 Sus scrofa miR-218-3p 14 27
aly-miR3445-5p.1 MIMAT0017724 Arabidopsis lyrata miR3445-5p.1 14 27
cel-miR-1829a-3p MIMAT0006769 Caenorhabditis elegans miR-1829a-3p 14 27
cel-miR-1820-3p MIMAT0020359 Caenorhabditis elegans miR-1820-3p 14 27
mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p 14 27
mdo-miR-218-1-3p MIMAT0026680 Monodelphis domestica miR-218-1-3p 14 27
mml-miR-218-2-3p MIMAT0026589 Macaca mulatta miR-218-2-3p 14 27
osa-miR396e-3p MIMAT0015159 Oryza sativa miR396e-3p 14 27
gga-miR-218-3p MIMAT0026518 Gallus gallus miR-218-3p 14 27
rno-miR-218a-2-3p MIMAT0004740 Rattus norvegicus miR-218a-2-3p 14 27
mmu-miR-218-2-3p MIMAT0005444 Mus musculus miR-218-2-3p 14 27
hsa-miR-218-2-3p MIMAT0004566 Homo sapiens miR-218-2-3p 14 27
hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p 14 27
>mdv1-miR-M4-3p MIMAT0003925 Mareks disease miR-M4-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 aatggttc 8
||||||||
Sbjct: 1 aatggttc 8
>oha-miR-218-2-3p MIMAT0036838 Ophiophagus hannah miR-218-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 1 atggttc 7
>ssa-miR-15c-2-3p MIMAT0032400 Salmo salar miR-15c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atggttc 8
|||||||
Sbjct: 8 atggttc 2
>prd-miR-7907b-3p MIMAT0030673 Panagrellus redivivus
miR-7907b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atggttc 8
|||||||
Sbjct: 8 atggttc 2
>mdo-miR-218-2-3p MIMAT0031111 Monodelphis domestica
miR-218-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 1 atggttc 7
>gga-miR-6662-3p MIMAT0025763 Gallus gallus miR-6662-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatggtt 7
|||||||
Sbjct: 1 aatggtt 7
>rmi-miR-5327 MIMAT0021400 Rhipicephalus microplus miR-5327
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aatggtt 7
|||||||
Sbjct: 2 aatggtt 8
>ssc-miR-218-3p MIMAT0017969 Sus scrofa miR-218-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 1 atggttc 7
>aly-miR3445-5p.1 MIMAT0017724 Arabidopsis lyrata miR3445-5p.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atggttc 8
|||||||
Sbjct: 8 atggttc 2
>cel-miR-1829a-3p MIMAT0006769 Caenorhabditis elegans
miR-1829a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatggtt 7
|||||||
Sbjct: 8 aatggtt 2
>cel-miR-1820-3p MIMAT0020359 Caenorhabditis elegans miR-1820-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aatggtt 7
|||||||
Sbjct: 7 aatggtt 1
>mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 1 atggttc 7
>mdo-miR-218-1-3p MIMAT0026680 Monodelphis domestica
miR-218-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 1 atggttc 7
>mml-miR-218-2-3p MIMAT0026589 Macaca mulatta miR-218-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 1 atggttc 7
>osa-miR396e-3p MIMAT0015159 Oryza sativa miR396e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 1 atggttc 7
>gga-miR-218-3p MIMAT0026518 Gallus gallus miR-218-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 2 atggttc 8
>rno-miR-218a-2-3p MIMAT0004740 Rattus norvegicus miR-218a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 2 atggttc 8
>mmu-miR-218-2-3p MIMAT0005444 Mus musculus miR-218-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 2 atggttc 8
>hsa-miR-218-2-3p MIMAT0004566 Homo sapiens miR-218-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 2 atggttc 8
>hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggttc 8
|||||||
Sbjct: 1 atggttc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 157
Number of extensions: 136
Number of successful extensions: 114
Number of sequences better than 100.0: 20
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
