BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-10
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bra-miR9555b-5p MIMAT0035679 Brassica rapa miR9555b-5p 14 20
cel-miR-8201-3p MIMAT0032816 Caenorhabditis elegans miR-8201-3p 14 20
hhi-miR-7792 MIMAT0030337 Hippoglossus hippoglossus miR-7792 14 20
crm-miR-7609 MIMAT0029627 Caenorhabditis remanei miR-7609 14 20
oan-miR-7435-3p MIMAT0029025 Ornithorhynchus anatinus miR-7435-3p 14 20
tca-miR-3873-3p MIMAT0018839 Tribolium castaneum miR-3873-3p 14 20
cre-miR1153-3p.2 MIMAT0005400 Chlamydomonas reinhardtii miR1153-... 14 20
cel-miR-1019-3p MIMAT0005032 Caenorhabditis elegans miR-1019-3p 14 20
oha-miR-20b-3p MIMAT0036806 Ophiophagus hannah miR-20b-3p 12 80
gma-miR9751 MIMAT0036380 Glycine max miR9751 12 80
chi-miR-380-3p MIMAT0036198 Capra hircus miR-380-3p 12 80
atr-miR8607 MIMAT0033896 Amborella trichopoda miR8607 12 80
str-miR-37b-5p MIMAT0033466 Strongyloides ratti miR-37b-5p 12 80
ssa-miR-183-3p MIMAT0032430 Salmo salar miR-183-3p 12 80
prd-miR-7957c-3p MIMAT0030823 Panagrellus redivivus miR-7957c-3p 12 80
prd-miR-7957b-3p MIMAT0030669 Panagrellus redivivus miR-7957b-3p 12 80
bdi-miR7708a-3p MIMAT0030134 Brachypodium distachyon miR7708a-3p 12 80
mtr-miR7699-3p MIMAT0029999 Medicago truncatula miR7699-3p 12 80
oan-miR-216b-3p MIMAT0029021 Ornithorhynchus anatinus miR-216b-3p 12 80
mdo-miR-7398s-3p MIMAT0028925 Monodelphis domestica miR-7398s-3p 12 80
ggo-miR-380 MIMAT0024195 Gorilla gorilla miR-380 12 80
tur-miR-5738-5p MIMAT0023110 Tetranychus urticae miR-5738-5p 12 80
mtr-miR2592bl-3p MIMAT0022206 Medicago truncatula miR2592bl-3p 12 80
aca-miR-20b-3p MIMAT0021864 Anolis carolinensis miR-20b-3p 12 80
dme-miR-4985-5p MIMAT0020221 Drosophila melanogaster miR-4985-5p 12 80
oar-miR-380-3p MIMAT0019254 Ovis aries miR-380-3p 12 80
tca-miR-3903-3p MIMAT0018910 Tribolium castaneum miR-3903-3p 12 80
mghv-miR-M1-10-3p MIMAT0018167 Mouse gammaherpesvirus miR-M1-10-3p 12 80
hsa-miR-4275 MIMAT0016905 Homo sapiens miR-4275 12 80
cin-miR-4112-3p MIMAT0016702 Ciona intestinalis miR-4112-3p 12 80
ppy-miR-556-3p MIMAT0016003 Pongo pygmaeus miR-556-3p 12 80
ppy-miR-380 MIMAT0015870 Pongo pygmaeus miR-380 12 80
bmo-miR-3309 MIMAT0015498 Bombyx mori miR-3309 12 80
bmo-miR-3290 MIMAT0015477 Bombyx mori miR-3290 12 80
tgu-miR-216b-3p MIMAT0027018 Taeniopygia guttata miR-216b-3p 12 80
tgu-miR-20b-3p MIMAT0027017 Taeniopygia guttata miR-20b-3p 12 80
eca-miR-380 MIMAT0013148 Equus caballus miR-380 12 80
ptr-miR-380 MIMAT0008132 Pan troglodytes miR-380 12 80
cfa-miR-380 MIMAT0006717 Canis familiaris miR-380 12 80
mml-miR-556-3p MIMAT0006425 Macaca mulatta miR-556-3p 12 80
mml-miR-380-3p MIMAT0006309 Macaca mulatta miR-380-3p 12 80
odi-miR-1495 MIMAT0006048 Oikopleura dioica miR-1495 12 80
oan-miR-20b-3p MIMAT0006854 Ornithorhynchus anatinus miR-20b-3p 12 80
mdo-miR-183-3p MIMAT0026691 Monodelphis domestica miR-183-3p 12 80
bta-miR-380-3p MIMAT0003804 Bos taurus miR-380-3p 12 80
kshv-miR-K12-1-5p MIMAT0002182 Kaposi sarcoma-associated miR-K12... 12 80
ptc-miR476b MIMAT0002072 Populus trichocarpa miR476b 12 80
aga-miR-263a MIMAT0001507 Anopheles gambiae miR-263a 12 80
gga-miR-20b-3p MIMAT0026551 Gallus gallus miR-20b-3p 12 80
dre-miR-183-3p MIMAT0031921 Danio rerio miR-183-3p 12 80
rno-miR-183-3p MIMAT0017141 Rattus norvegicus miR-183-3p 12 80
hsa-miR-380-3p MIMAT0000735 Homo sapiens miR-380-3p 12 80
>bra-miR9555b-5p MIMAT0035679 Brassica rapa miR9555b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattaca 7
|||||||
Sbjct: 7 aattaca 1
>cel-miR-8201-3p MIMAT0032816 Caenorhabditis elegans miR-8201-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattaca 7
|||||||
Sbjct: 1 aattaca 7
>hhi-miR-7792 MIMAT0030337 Hippoglossus hippoglossus miR-7792
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattaca 7
|||||||
Sbjct: 7 aattaca 1
>crm-miR-7609 MIMAT0029627 Caenorhabditis remanei miR-7609
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattaca 7
|||||||
Sbjct: 7 aattaca 1
>oan-miR-7435-3p MIMAT0029025 Ornithorhynchus anatinus
miR-7435-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aattaca 7
|||||||
Sbjct: 1 aattaca 7
>tca-miR-3873-3p MIMAT0018839 Tribolium castaneum miR-3873-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattaca 7
|||||||
Sbjct: 8 aattaca 2
>cre-miR1153-3p.2 MIMAT0005400 Chlamydomonas reinhardtii
miR1153-3p.2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattaca 7
|||||||
Sbjct: 8 aattaca 2
>cel-miR-1019-3p MIMAT0005032 Caenorhabditis elegans miR-1019-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 aattaca 7
|||||||
Sbjct: 8 aattaca 2
>oha-miR-20b-3p MIMAT0036806 Ophiophagus hannah miR-20b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>gma-miR9751 MIMAT0036380 Glycine max miR9751
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattac 6
||||||
Sbjct: 6 aattac 1
>chi-miR-380-3p MIMAT0036198 Capra hircus miR-380-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>atr-miR8607 MIMAT0033896 Amborella trichopoda miR8607
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>str-miR-37b-5p MIMAT0033466 Strongyloides ratti miR-37b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattac 6
||||||
Sbjct: 8 aattac 3
>ssa-miR-183-3p MIMAT0032430 Salmo salar miR-183-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattac 6
||||||
Sbjct: 3 aattac 8
>prd-miR-7957c-3p MIMAT0030823 Panagrellus redivivus
miR-7957c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattac 6
||||||
Sbjct: 6 aattac 1
>prd-miR-7957b-3p MIMAT0030669 Panagrellus redivivus
miR-7957b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattac 6
||||||
Sbjct: 6 aattac 1
>bdi-miR7708a-3p MIMAT0030134 Brachypodium distachyon
miR7708a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 6 attaca 1
>mtr-miR7699-3p MIMAT0029999 Medicago truncatula miR7699-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 6 attaca 1
>oan-miR-216b-3p MIMAT0029021 Ornithorhynchus anatinus
miR-216b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattac 6
||||||
Sbjct: 3 aattac 8
>mdo-miR-7398s-3p MIMAT0028925 Monodelphis domestica
miR-7398s-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattac 6
||||||
Sbjct: 6 aattac 1
>ggo-miR-380 MIMAT0024195 Gorilla gorilla miR-380
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>tur-miR-5738-5p MIMAT0023110 Tetranychus urticae miR-5738-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>mtr-miR2592bl-3p MIMAT0022206 Medicago truncatula miR2592bl-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattac 6
||||||
Sbjct: 8 aattac 3
>aca-miR-20b-3p MIMAT0021864 Anolis carolinensis miR-20b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>dme-miR-4985-5p MIMAT0020221 Drosophila melanogaster
miR-4985-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattac 6
||||||
Sbjct: 3 aattac 8
>oar-miR-380-3p MIMAT0019254 Ovis aries miR-380-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>tca-miR-3903-3p MIMAT0018910 Tribolium castaneum miR-3903-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attaca 7
||||||
Sbjct: 3 attaca 8
>mghv-miR-M1-10-3p MIMAT0018167 Mouse gammaherpesvirus
miR-M1-10-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attaca 7
||||||
Sbjct: 3 attaca 8
>hsa-miR-4275 MIMAT0016905 Homo sapiens miR-4275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattac 6
||||||
Sbjct: 3 aattac 8
>cin-miR-4112-3p MIMAT0016702 Ciona intestinalis miR-4112-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>ppy-miR-556-3p MIMAT0016003 Pongo pygmaeus miR-556-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attaca 7
||||||
Sbjct: 3 attaca 8
>ppy-miR-380 MIMAT0015870 Pongo pygmaeus miR-380
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>bmo-miR-3309 MIMAT0015498 Bombyx mori miR-3309
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 6 attaca 1
>bmo-miR-3290 MIMAT0015477 Bombyx mori miR-3290
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>tgu-miR-216b-3p MIMAT0027018 Taeniopygia guttata miR-216b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattac 6
||||||
Sbjct: 3 aattac 8
>tgu-miR-20b-3p MIMAT0027017 Taeniopygia guttata miR-20b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>eca-miR-380 MIMAT0013148 Equus caballus miR-380
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>ptr-miR-380 MIMAT0008132 Pan troglodytes miR-380
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>cfa-miR-380 MIMAT0006717 Canis familiaris miR-380
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>mml-miR-556-3p MIMAT0006425 Macaca mulatta miR-556-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attaca 7
||||||
Sbjct: 3 attaca 8
>mml-miR-380-3p MIMAT0006309 Macaca mulatta miR-380-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>odi-miR-1495 MIMAT0006048 Oikopleura dioica miR-1495
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>oan-miR-20b-3p MIMAT0006854 Ornithorhynchus anatinus miR-20b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>mdo-miR-183-3p MIMAT0026691 Monodelphis domestica miR-183-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattac 6
||||||
Sbjct: 3 aattac 8
>bta-miR-380-3p MIMAT0003804 Bos taurus miR-380-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>kshv-miR-K12-1-5p MIMAT0002182 Kaposi sarcoma-associated
miR-K12-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 attaca 7
||||||
Sbjct: 1 attaca 6
>ptc-miR476b MIMAT0002072 Populus trichocarpa miR476b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aattac 6
||||||
Sbjct: 8 aattac 3
>aga-miR-263a MIMAT0001507 Anopheles gambiae miR-263a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 6 attaca 1
>gga-miR-20b-3p MIMAT0026551 Gallus gallus miR-20b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
>dre-miR-183-3p MIMAT0031921 Danio rerio miR-183-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattac 6
||||||
Sbjct: 3 aattac 8
>rno-miR-183-3p MIMAT0017141 Rattus norvegicus miR-183-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aattac 6
||||||
Sbjct: 3 aattac 8
>hsa-miR-380-3p MIMAT0000735 Homo sapiens miR-380-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 attaca 7
||||||
Sbjct: 8 attaca 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 69
Number of extensions: 61
Number of successful extensions: 52
Number of sequences better than 100.0: 52
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 52
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
