BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d8-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D8-3p MIMAT0028179 Duck enteritis miR-D8-3p 14 20
gga-miR-6710-3p MIMAT0025820 Gallus gallus miR-6710-3p 14 20
ath-miR5998b MIMAT0023522 Arabidopsis thaliana miR5998b 14 20
ath-miR5998a MIMAT0023521 Arabidopsis thaliana miR5998a 14 20
ppy-miR-1537 MIMAT0016234 Pongo pygmaeus miR-1537 14 20
hsa-miR-548g-3p MIMAT0005912 Homo sapiens miR-548g-3p 14 20
dre-miR-723-5p MIMAT0003750 Danio rerio miR-723-5p 14 20
oha-miR-22b MIMAT0036844 Ophiophagus hannah miR-22b 12 80
tae-miR396-5p MIMAT0035771 Triticum aestivum miR396-5p 12 80
rno-miR-452-5p MIMAT0035748 Rattus norvegicus miR-452-5p 12 80
bdi-miR2275b MIMAT0035534 Brachypodium distachyon miR2275b 12 80
gra-miR8671 MIMAT0034043 Gossypium raimondii miR8671 12 80
sma-miR-96-3p MIMAT0033636 Schistosoma mansoni miR-96-3p 12 80
str-miR-255-3p MIMAT0033457 Strongyloides ratti miR-255-3p 12 80
prd-miR-255-3p MIMAT0030761 Panagrellus redivivus miR-255-3p 12 80
prd-miR-7897-5p MIMAT0030586 Panagrellus redivivus miR-7897-5p 12 80
prd-miR-7868-3p MIMAT0030477 Panagrellus redivivus miR-7868-3p 12 80
bta-miR-7859 MIMAT0030434 Bos taurus miR-7859 12 80
crm-miR-255 MIMAT0029922 Caenorhabditis remanei miR-255 12 80
mmu-miR-7664-5p MIMAT0029834 Mus musculus miR-7664-5p 12 80
cbn-miR-255 MIMAT0029768 Caenorhabditis brenneri miR-255 12 80
gga-miR-7448-3p MIMAT0029051 Gallus gallus miR-7448-3p 12 80
mdo-miR-7262b-3p MIMAT0028545 Monodelphis domestica miR-7262b-3p 12 80
hsa-miR-548az-3p MIMAT0025457 Homo sapiens miR-548az-3p 12 80
ssc-miR-452 MIMAT0025374 Sus scrofa miR-452 12 80
hvu-miR6212 MIMAT0024840 Hordeum vulgare miR6212 12 80
mml-miR-1243-3p MIMAT0024338 Macaca mulatta miR-1243-3p 12 80
ggo-miR-4738 MIMAT0024284 Gorilla gorilla miR-4738 12 80
ggo-miR-548e MIMAT0024276 Gorilla gorilla miR-548e 12 80
ggo-miR-452 MIMAT0024211 Gorilla gorilla miR-452 12 80
ggo-miR-582 MIMAT0024202 Gorilla gorilla miR-582 12 80
ptr-miR-548e MIMAT0024057 Pan troglodytes miR-548e 12 80
hhv6b-miR-Ro6-2-3p MIMAT0026459 Human herpesvirus miR-Ro6-2-3p 12 80
hco-miR-255 MIMAT0023411 Haemonchus contortus miR-255 12 80
hco-miR-5898-3p MIMAT0023343 Haemonchus contortus miR-5898-3p 12 80
ola-miR-145 MIMAT0022669 Oryzias latipes miR-145 12 80
hsa-miR-548ar-3p MIMAT0022266 Homo sapiens miR-548ar-3p 12 80
aca-miR-216b-3p MIMAT0021877 Anolis carolinensis miR-216b-3p 12 80
mtr-miR5286b MIMAT0021352 Medicago truncatula miR5286b 12 80
sko-miR-4823-3p MIMAT0020028 Saccoglossus kowalevskii miR-4823-3p 12 80
hsa-miR-4738-3p MIMAT0019867 Homo sapiens miR-4738-3p 12 80
bta-miR-3600 MIMAT0016932 Bos taurus miR-3600 12 80
hsa-miR-4328 MIMAT0016926 Homo sapiens miR-4328 12 80
ppy-miR-582-5p MIMAT0016024 Pongo pygmaeus miR-582-5p 12 80
ppy-miR-452 MIMAT0015897 Pongo pygmaeus miR-452 12 80
aly-miR3433-3p MIMAT0017686 Arabidopsis lyrata miR3433-3p 12 80
bmo-miR-3396 MIMAT0015600 Bombyx mori miR-3396 12 80
mmu-miR-3112-3p MIMAT0014956 Mus musculus miR-3112-3p 12 80
eca-miR-582-5p MIMAT0013103 Equus caballus miR-582-5p 12 80
dme-miR-2498-3p MIMAT0012211 Drosophila melanogaster miR-2498-3p 12 80
bta-miR-2384 MIMAT0011933 Bos taurus miR-2384 12 80
bta-miR-2352 MIMAT0011888 Bos taurus miR-2352 12 80
bta-miR-2285a MIMAT0011797 Bos taurus miR-2285a 12 80
zma-miR2275c-3p MIMAT0011772 Zea mays miR2275c-3p 12 80
zma-miR2275b-3p MIMAT0011770 Zea mays miR2275b-3p 12 80
sme-miR-2157-3p MIMAT0012148 Schmidtea mediterranea miR-2157-3p 12 80
cfa-miR-452 MIMAT0009900 Canis familiaris miR-452 12 80
spu-miR-219-3p MIMAT0022953 Strongylocentrotus purpuratus miR-21... 12 80
bta-miR-582 MIMAT0009351 Bos taurus miR-582 12 80
ptr-miR-548f MIMAT0008221 Pan troglodytes miR-548f 12 80
ptr-miR-548a MIMAT0008218 Pan troglodytes miR-548a 12 80
ptr-miR-452 MIMAT0008154 Pan troglodytes miR-452 12 80
osa-miR1847.1 MIMAT0007766 Oryza sativa miR1847.1 12 80
mml-miR-890-3p MIMAT0026913 Macaca mulatta miR-890-3p 12 80
mml-miR-582-5p MIMAT0006443 Macaca mulatta miR-582-5p 12 80
mml-miR-452-5p MIMAT0006336 Macaca mulatta miR-452-5p 12 80
gga-miR-1631 MIMAT0007502 Gallus gallus miR-1631 12 80
odi-miR-1493 MIMAT0006046 Oikopleura dioica miR-1493 12 80
oan-miR-1422q-3p MIMAT0007317 Ornithorhynchus anatinus miR-1422q-3p 12 80
hsa-miR-548f-3p MIMAT0005895 Homo sapiens miR-548f-3p 12 80
hsa-miR-548e-3p MIMAT0005874 Homo sapiens miR-548e-3p 12 80
mmu-miR-582-5p MIMAT0005291 Mus musculus miR-582-5p 12 80
mmu-miR-881-3p MIMAT0004846 Mus musculus miR-881-3p 12 80
cbr-miR-255 MIMAT0004297 Caenorhabditis briggsae miR-255 12 80
ath-miR837-5p MIMAT0004258 Arabidopsis thaliana miR837-5p 12 80
sme-miR-61a-5p MIMAT0012105 Schmidtea mediterranea miR-61a-5p 12 80
hsa-miR-548a-3p MIMAT0003251 Homo sapiens miR-548a-3p 12 80
hsa-miR-582-5p MIMAT0003247 Homo sapiens miR-582-5p 12 80
kshv-miR-K12-2-5p MIMAT0002183 Kaposi sarcoma-associated miR-K12... 12 80
hsa-miR-452-5p MIMAT0001635 Homo sapiens miR-452-5p 12 80
mghv-miR-M1-6-3p MIMAT0001569 Mouse gammaherpesvirus miR-M1-6-3p 12 80
ath-miR401 MIMAT0001002 Arabidopsis thaliana miR401 12 80
cel-miR-255-3p MIMAT0004216 Caenorhabditis elegans miR-255-3p 12 80
cel-miR-49-5p MIMAT0020309 Caenorhabditis elegans miR-49-5p 12 80
>dev-miR-D8-3p MIMAT0028179 Duck enteritis miR-D8-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acagttt 7
|||||||
Sbjct: 2 acagttt 8
>gga-miR-6710-3p MIMAT0025820 Gallus gallus miR-6710-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acagttt 7
|||||||
Sbjct: 7 acagttt 1
>ath-miR5998b MIMAT0023522 Arabidopsis thaliana miR5998b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acagttt 7
|||||||
Sbjct: 1 acagttt 7
>ath-miR5998a MIMAT0023521 Arabidopsis thaliana miR5998a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acagttt 7
|||||||
Sbjct: 1 acagttt 7
>ppy-miR-1537 MIMAT0016234 Pongo pygmaeus miR-1537
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acagttt 7
|||||||
Sbjct: 8 acagttt 2
>hsa-miR-548g-3p MIMAT0005912 Homo sapiens miR-548g-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acagttt 7
|||||||
Sbjct: 8 acagttt 2
>dre-miR-723-5p MIMAT0003750 Danio rerio miR-723-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acagttt 7
|||||||
Sbjct: 2 acagttt 8
>oha-miR-22b MIMAT0036844 Ophiophagus hannah miR-22b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 1 acagtt 6
>tae-miR396-5p MIMAT0035771 Triticum aestivum miR396-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>rno-miR-452-5p MIMAT0035748 Rattus norvegicus miR-452-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>bdi-miR2275b MIMAT0035534 Brachypodium distachyon miR2275b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 3 cagttt 8
>gra-miR8671 MIMAT0034043 Gossypium raimondii miR8671
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>sma-miR-96-3p MIMAT0033636 Schistosoma mansoni miR-96-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>str-miR-255-3p MIMAT0033457 Strongyloides ratti miR-255-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>prd-miR-255-3p MIMAT0030761 Panagrellus redivivus miR-255-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>prd-miR-7897-5p MIMAT0030586 Panagrellus redivivus miR-7897-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 3 cagttt 8
>prd-miR-7868-3p MIMAT0030477 Panagrellus redivivus miR-7868-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>bta-miR-7859 MIMAT0030434 Bos taurus miR-7859
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>crm-miR-255 MIMAT0029922 Caenorhabditis remanei miR-255
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>mmu-miR-7664-5p MIMAT0029834 Mus musculus miR-7664-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 1 cagttt 6
>cbn-miR-255 MIMAT0029768 Caenorhabditis brenneri miR-255
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>gga-miR-7448-3p MIMAT0029051 Gallus gallus miR-7448-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>mdo-miR-7262b-3p MIMAT0028545 Monodelphis domestica
miR-7262b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>hsa-miR-548az-3p MIMAT0025457 Homo sapiens miR-548az-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>ssc-miR-452 MIMAT0025374 Sus scrofa miR-452
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>hvu-miR6212 MIMAT0024840 Hordeum vulgare miR6212
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>mml-miR-1243-3p MIMAT0024338 Macaca mulatta miR-1243-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>ggo-miR-4738 MIMAT0024284 Gorilla gorilla miR-4738
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>ggo-miR-548e MIMAT0024276 Gorilla gorilla miR-548e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>ggo-miR-452 MIMAT0024211 Gorilla gorilla miR-452
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>ggo-miR-582 MIMAT0024202 Gorilla gorilla miR-582
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>ptr-miR-548e MIMAT0024057 Pan troglodytes miR-548e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>hhv6b-miR-Ro6-2-3p MIMAT0026459 Human herpesvirus miR-Ro6-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>hco-miR-255 MIMAT0023411 Haemonchus contortus miR-255
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>hco-miR-5898-3p MIMAT0023343 Haemonchus contortus miR-5898-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 1 cagttt 6
>ola-miR-145 MIMAT0022669 Oryzias latipes miR-145
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 3 cagttt 8
>hsa-miR-548ar-3p MIMAT0022266 Homo sapiens miR-548ar-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>aca-miR-216b-3p MIMAT0021877 Anolis carolinensis miR-216b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 1 acagtt 6
>mtr-miR5286b MIMAT0021352 Medicago truncatula miR5286b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>sko-miR-4823-3p MIMAT0020028 Saccoglossus kowalevskii
miR-4823-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 3 cagttt 8
>hsa-miR-4738-3p MIMAT0019867 Homo sapiens miR-4738-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>bta-miR-3600 MIMAT0016932 Bos taurus miR-3600
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 1 acagtt 6
>hsa-miR-4328 MIMAT0016926 Homo sapiens miR-4328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 2 cagttt 7
>ppy-miR-582-5p MIMAT0016024 Pongo pygmaeus miR-582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>ppy-miR-452 MIMAT0015897 Pongo pygmaeus miR-452
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>aly-miR3433-3p MIMAT0017686 Arabidopsis lyrata miR3433-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>bmo-miR-3396 MIMAT0015600 Bombyx mori miR-3396
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 3 cagttt 8
>mmu-miR-3112-3p MIMAT0014956 Mus musculus miR-3112-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 1 cagttt 6
>eca-miR-582-5p MIMAT0013103 Equus caballus miR-582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>dme-miR-2498-3p MIMAT0012211 Drosophila melanogaster
miR-2498-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>bta-miR-2384 MIMAT0011933 Bos taurus miR-2384
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>bta-miR-2352 MIMAT0011888 Bos taurus miR-2352
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>bta-miR-2285a MIMAT0011797 Bos taurus miR-2285a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>zma-miR2275c-3p MIMAT0011772 Zea mays miR2275c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 3 cagttt 8
>zma-miR2275b-3p MIMAT0011770 Zea mays miR2275b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 3 cagttt 8
>sme-miR-2157-3p MIMAT0012148 Schmidtea mediterranea miR-2157-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 1 cagttt 6
>cfa-miR-452 MIMAT0009900 Canis familiaris miR-452
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>spu-miR-219-3p MIMAT0022953 Strongylocentrotus purpuratus
miR-219-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 8 acagtt 3
>bta-miR-582 MIMAT0009351 Bos taurus miR-582
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>ptr-miR-548f MIMAT0008221 Pan troglodytes miR-548f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>ptr-miR-548a MIMAT0008218 Pan troglodytes miR-548a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>ptr-miR-452 MIMAT0008154 Pan troglodytes miR-452
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>osa-miR1847.1 MIMAT0007766 Oryza sativa miR1847.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 3 cagttt 8
>mml-miR-890-3p MIMAT0026913 Macaca mulatta miR-890-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>mml-miR-582-5p MIMAT0006443 Macaca mulatta miR-582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>mml-miR-452-5p MIMAT0006336 Macaca mulatta miR-452-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>gga-miR-1631 MIMAT0007502 Gallus gallus miR-1631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>odi-miR-1493 MIMAT0006046 Oikopleura dioica miR-1493
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 8 acagtt 3
>oan-miR-1422q-3p MIMAT0007317 Ornithorhynchus anatinus
miR-1422q-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>hsa-miR-548f-3p MIMAT0005895 Homo sapiens miR-548f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>hsa-miR-548e-3p MIMAT0005874 Homo sapiens miR-548e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>mmu-miR-582-5p MIMAT0005291 Mus musculus miR-582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>mmu-miR-881-3p MIMAT0004846 Mus musculus miR-881-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>cbr-miR-255 MIMAT0004297 Caenorhabditis briggsae miR-255
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>ath-miR837-5p MIMAT0004258 Arabidopsis thaliana miR837-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 3 cagttt 8
>sme-miR-61a-5p MIMAT0012105 Schmidtea mediterranea miR-61a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 1 cagttt 6
>hsa-miR-548a-3p MIMAT0003251 Homo sapiens miR-548a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>hsa-miR-582-5p MIMAT0003247 Homo sapiens miR-582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acagtt 6
||||||
Sbjct: 3 acagtt 8
>kshv-miR-K12-2-5p MIMAT0002183 Kaposi sarcoma-associated
miR-K12-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>hsa-miR-452-5p MIMAT0001635 Homo sapiens miR-452-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acagtt 6
||||||
Sbjct: 6 acagtt 1
>mghv-miR-M1-6-3p MIMAT0001569 Mouse gammaherpesvirus
miR-M1-6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>ath-miR401 MIMAT0001002 Arabidopsis thaliana miR401
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 8 cagttt 3
>cel-miR-255-3p MIMAT0004216 Caenorhabditis elegans miR-255-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cagttt 7
||||||
Sbjct: 6 cagttt 1
>cel-miR-49-5p MIMAT0020309 Caenorhabditis elegans miR-49-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cagttt 7
||||||
Sbjct: 3 cagttt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 111
Number of extensions: 104
Number of successful extensions: 84
Number of sequences better than 100.0: 84
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 84
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)