BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-27-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-27-3p MIMAT0016951 Rhesus lymphocryptovirus miR-rL1... 14 20
dps-miR-2566a-3p MIMAT0012395 Drosophila pseudoobscura miR-2566a-3p 14 20
mmu-miR-669o-3p MIMAT0017347 Mus musculus miR-669o-3p 14 20
mmu-miR-669a-3-3p MIMAT0017251 Mus musculus miR-669a-3-3p 14 20
mmu-miR-669a-3p MIMAT0017243 Mus musculus miR-669a-3p 14 20
ebv-miR-BART10-3p MIMAT0003420 Epstein Barr miR-BART10-3p 14 20
ata-miR9863b-5p MIMAT0037236 Aegilops tauschii miR9863b-5p 12 80
ata-miR9863a-5p MIMAT0037104 Aegilops tauschii miR9863a-5p 12 80
sly-miR9469-5p MIMAT0035435 Solanum lycopersicum miR9469-5p 12 80
ppc-miR-8318-5p MIMAT0033174 Pristionchus pacificus miR-8318-5p 12 80
ptc-miR7812 MIMAT0030371 Populus trichocarpa miR7812 12 80
bdi-miR7764-5p MIMAT0030274 Brachypodium distachyon miR7764-5p 12 80
dev-miR-D14-3p MIMAT0028187 Duck enteritis miR-D14-3p 12 80
ptc-miR6431 MIMAT0025232 Populus trichocarpa miR6431 12 80
nta-miR6164b MIMAT0024781 Nicotiana tabacum miR6164b 12 80
nta-miR6164a MIMAT0024780 Nicotiana tabacum miR6164a 12 80
mml-miR-4803 MIMAT0024330 Macaca mulatta miR-4803 12 80
asu-miR-5358a-5p MIMAT0021578 Ascaris suum miR-5358a-5p 12 80
hsa-miR-4803 MIMAT0019983 Homo sapiens miR-4803 12 80
tca-miR-3809-5p MIMAT0018640 Tribolium castaneum miR-3809-5p 12 80
vvi-miR3637-5p MIMAT0018047 Vitis vinifera miR3637-5p 12 80
cin-miR-4172-3p MIMAT0016780 Ciona intestinalis miR-4172-3p 12 80
mmu-miR-669p-3p MIMAT0014890 Mus musculus miR-669p-3p 12 80
bmo-miR-2786 MIMAT0013682 Bombyx mori miR-2786 12 80
sbi-miR821b MIMAT0011386 Sorghum bicolor miR821b 12 80
ath-miR863-5p MIMAT0004309 Arabidopsis thaliana miR863-5p 12 80
>rlcv-miR-rL1-27-3p MIMAT0016951 Rhesus lymphocryptovirus
miR-rL1-27-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acataac 7
|||||||
Sbjct: 2 acataac 8
>dps-miR-2566a-3p MIMAT0012395 Drosophila pseudoobscura
miR-2566a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acataac 7
|||||||
Sbjct: 2 acataac 8
>mmu-miR-669o-3p MIMAT0017347 Mus musculus miR-669o-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acataac 7
|||||||
Sbjct: 1 acataac 7
>mmu-miR-669a-3-3p MIMAT0017251 Mus musculus miR-669a-3-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acataac 7
|||||||
Sbjct: 1 acataac 7
>mmu-miR-669a-3p MIMAT0017243 Mus musculus miR-669a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acataac 7
|||||||
Sbjct: 1 acataac 7
>ebv-miR-BART10-3p MIMAT0003420 Epstein Barr miR-BART10-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acataac 7
|||||||
Sbjct: 2 acataac 8
>ata-miR9863b-5p MIMAT0037236 Aegilops tauschii miR9863b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataac 7
||||||
Sbjct: 7 cataac 2
>ata-miR9863a-5p MIMAT0037104 Aegilops tauschii miR9863a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataac 7
||||||
Sbjct: 7 cataac 2
>sly-miR9469-5p MIMAT0035435 Solanum lycopersicum miR9469-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acataa 6
||||||
Sbjct: 3 acataa 8
>ppc-miR-8318-5p MIMAT0033174 Pristionchus pacificus miR-8318-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataac 7
||||||
Sbjct: 6 cataac 1
>ptc-miR7812 MIMAT0030371 Populus trichocarpa miR7812
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataac 7
||||||
Sbjct: 8 cataac 3
>bdi-miR7764-5p MIMAT0030274 Brachypodium distachyon miR7764-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cataac 7
||||||
Sbjct: 1 cataac 6
>dev-miR-D14-3p MIMAT0028187 Duck enteritis miR-D14-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataac 7
||||||
Sbjct: 8 cataac 3
>ptc-miR6431 MIMAT0025232 Populus trichocarpa miR6431
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acataa 6
||||||
Sbjct: 6 acataa 1
>nta-miR6164b MIMAT0024781 Nicotiana tabacum miR6164b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acataa 6
||||||
Sbjct: 3 acataa 8
>nta-miR6164a MIMAT0024780 Nicotiana tabacum miR6164a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acataa 6
||||||
Sbjct: 3 acataa 8
>mml-miR-4803 MIMAT0024330 Macaca mulatta miR-4803
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acataa 6
||||||
Sbjct: 3 acataa 8
>asu-miR-5358a-5p MIMAT0021578 Ascaris suum miR-5358a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataac 7
||||||
Sbjct: 8 cataac 3
>hsa-miR-4803 MIMAT0019983 Homo sapiens miR-4803
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acataa 6
||||||
Sbjct: 3 acataa 8
>tca-miR-3809-5p MIMAT0018640 Tribolium castaneum miR-3809-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cataac 7
||||||
Sbjct: 3 cataac 8
>vvi-miR3637-5p MIMAT0018047 Vitis vinifera miR3637-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acataa 6
||||||
Sbjct: 8 acataa 3
>cin-miR-4172-3p MIMAT0016780 Ciona intestinalis miR-4172-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acataa 6
||||||
Sbjct: 8 acataa 3
>mmu-miR-669p-3p MIMAT0014890 Mus musculus miR-669p-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cataac 7
||||||
Sbjct: 1 cataac 6
>bmo-miR-2786 MIMAT0013682 Bombyx mori miR-2786
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataac 7
||||||
Sbjct: 8 cataac 3
>sbi-miR821b MIMAT0011386 Sorghum bicolor miR821b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cataac 7
||||||
Sbjct: 8 cataac 3
>ath-miR863-5p MIMAT0004309 Arabidopsis thaliana miR863-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acataa 6
||||||
Sbjct: 6 acataa 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 37
Number of extensions: 31
Number of successful extensions: 26
Number of sequences better than 100.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
