BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-14
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bra-miR6032-5p MIMAT0035862 Brassica rapa miR6032-5p 14 27
gsa-miR-9391-5p MIMAT0035326 Gyrodactylus salaris miR-9391-5p 14 27
gra-miR8768 MIMAT0034204 Gossypium raimondii miR8768 14 27
gra-miR7494d MIMAT0034168 Gossypium raimondii miR7494d 14 27
ppc-miR-8360-3p MIMAT0033283 Pristionchus pacificus miR-8360-3p 14 27
mdo-miR-7386m-5p MIMAT0028862 Monodelphis domestica miR-7386m-5p 14 27
mmu-miR-7232-5p MIMAT0028432 Mus musculus miR-7232-5p 14 27
gga-miR-6658-3p MIMAT0025759 Gallus gallus miR-6658-3p 14 27
asu-miR-36f-5p MIMAT0021546 Ascaris suum miR-36f-5p 14 27
mtr-miR5208c MIMAT0021141 Medicago truncatula miR5208c 14 27
mtr-miR5208b MIMAT0021140 Medicago truncatula miR5208b 14 27
mtr-miR5208a MIMAT0021139 Medicago truncatula miR5208a 14 27
hsa-miR-4802-3p MIMAT0019982 Homo sapiens miR-4802-3p 14 27
hsa-miR-4716-5p MIMAT0019826 Homo sapiens miR-4716-5p 14 27
bmo-miR-3378-5p MIMAT0015569 Bombyx mori miR-3378-5p 14 27
bmo-miR-3375-5p MIMAT0015565 Bombyx mori miR-3375-5p 14 27
tgu-miR-146a-3p MIMAT0014465 Taeniopygia guttata miR-146a-3p 14 27
gga-miR-146c-3p MIMAT0007736 Gallus gallus miR-146c-3p 14 27
>bra-miR6032-5p MIMAT0035862 Brassica rapa miR6032-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acatgga 7
|||||||
Sbjct: 2 acatgga 8
>gsa-miR-9391-5p MIMAT0035326 Gyrodactylus salaris miR-9391-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acatgga 7
|||||||
Sbjct: 8 acatgga 2
>gra-miR8768 MIMAT0034204 Gossypium raimondii miR8768
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acatgga 7
|||||||
Sbjct: 8 acatgga 2
>gra-miR7494d MIMAT0034168 Gossypium raimondii miR7494d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catggac 8
|||||||
Sbjct: 2 catggac 8
>ppc-miR-8360-3p MIMAT0033283 Pristionchus pacificus miR-8360-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catggac 8
|||||||
Sbjct: 8 catggac 2
>mdo-miR-7386m-5p MIMAT0028862 Monodelphis domestica
miR-7386m-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catggac 8
|||||||
Sbjct: 1 catggac 7
>mmu-miR-7232-5p MIMAT0028432 Mus musculus miR-7232-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acatgga 7
|||||||
Sbjct: 2 acatgga 8
>gga-miR-6658-3p MIMAT0025759 Gallus gallus miR-6658-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 catggac 8
|||||||
Sbjct: 1 catggac 7
>asu-miR-36f-5p MIMAT0021546 Ascaris suum miR-36f-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acatgga 7
|||||||
Sbjct: 1 acatgga 7
>mtr-miR5208c MIMAT0021141 Medicago truncatula miR5208c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acatgga 7
|||||||
Sbjct: 2 acatgga 8
>mtr-miR5208b MIMAT0021140 Medicago truncatula miR5208b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acatgga 7
|||||||
Sbjct: 2 acatgga 8
>mtr-miR5208a MIMAT0021139 Medicago truncatula miR5208a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acatgga 7
|||||||
Sbjct: 2 acatgga 8
>hsa-miR-4802-3p MIMAT0019982 Homo sapiens miR-4802-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acatgga 7
|||||||
Sbjct: 2 acatgga 8
>hsa-miR-4716-5p MIMAT0019826 Homo sapiens miR-4716-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acatgga 7
|||||||
Sbjct: 7 acatgga 1
>bmo-miR-3378-5p MIMAT0015569 Bombyx mori miR-3378-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acatgga 7
|||||||
Sbjct: 8 acatgga 2
>bmo-miR-3375-5p MIMAT0015565 Bombyx mori miR-3375-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acatgga 7
|||||||
Sbjct: 7 acatgga 1
>tgu-miR-146a-3p MIMAT0014465 Taeniopygia guttata miR-146a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catggac 8
|||||||
Sbjct: 8 catggac 2
>gga-miR-146c-3p MIMAT0007736 Gallus gallus miR-146c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 catggac 8
|||||||
Sbjct: 8 catggac 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 122
Number of extensions: 104
Number of successful extensions: 72
Number of sequences better than 100.0: 18
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
