BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-4-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-7044-5p MIMAT0027992 Mus musculus miR-7044-5p 14 20
bta-miR-3596 MIMAT0016940 Bos taurus miR-3596 14 20
cin-miR-4020b-5p MIMAT0016533 Ciona intestinalis miR-4020b-5p 14 20
sja-miR-3504 MIMAT0016313 Schistosoma japonicum miR-3504 14 20
bta-miR-2405 MIMAT0011963 Bos taurus miR-2405 14 20
rlcv-miR-rL1-4-3p MIMAT0003431 Rhesus lymphocryptovirus miR-rL1-... 14 20
gma-miR9754 MIMAT0036385 Glycine max miR9754 12 80
chi-miR-140-3p MIMAT0035961 Capra hircus miR-140-3p 12 80
gsa-miR-9403-3p MIMAT0035355 Gyrodactylus salaris miR-9403-3p 12 80
efu-miR-9364 MIMAT0035181 Eptesicus fuscus miR-9364 12 80
eca-miR-9035 MIMAT0034577 Equus caballus miR-9035 12 80
sma-miR-8461-3p MIMAT0033640 Schistosoma mansoni miR-8461-3p 12 80
ssa-miR-92b-5p MIMAT0032711 Salmo salar miR-92b-5p 12 80
ipu-miR-7559 MIMAT0029555 Ictalurus punctatus miR-7559 12 80
ipu-miR-140 MIMAT0029417 Ictalurus punctatus miR-140 12 80
mdo-miR-7398p-5p MIMAT0028918 Monodelphis domestica miR-7398p-5p 12 80
mdo-miR-7398o-5p MIMAT0028908 Monodelphis domestica miR-7398o-5p 12 80
mdo-miR-7398k-5p MIMAT0028906 Monodelphis domestica miR-7398k-5p 12 80
mdo-miR-7398n-5p MIMAT0028904 Monodelphis domestica miR-7398n-5p 12 80
mdo-miR-7260-3p MIMAT0028487 Monodelphis domestica miR-7260-3p 12 80
ddi-miR-7131d MIMAT0028139 Dictyostelium discoideum miR-7131d 12 80
hsa-miR-7108-5p MIMAT0028113 Homo sapiens miR-7108-5p 12 80
mmu-miR-7013-3p MIMAT0027931 Mus musculus miR-7013-3p 12 80
hsa-miR-6833-5p MIMAT0027566 Homo sapiens miR-6833-5p 12 80
gga-miR-6612-5p MIMAT0025707 Gallus gallus miR-6612-5p 12 80
pol-miR-140-3p MIMAT0025435 Paralichthys olivaceus miR-140-3p 12 80
mmu-miR-6376 MIMAT0025120 Mus musculus miR-6376 12 80
mmu-miR-6358 MIMAT0025101 Mus musculus miR-6358 12 80
mml-miR-4536 MIMAT0024332 Macaca mulatta miR-4536 12 80
ggo-miR-140 MIMAT0024081 Gorilla gorilla miR-140 12 80
ptr-miR-4536 MIMAT0024052 Pan troglodytes miR-4536 12 80
cgr-miR-140-3p MIMAT0023768 Cricetulus griseus miR-140-3p 12 80
osa-miR5143b MIMAT0023289 Oryza sativa miR5143b 12 80
sha-miR-140 MIMAT0022778 Sarcophilus harrisii miR-140 12 80
ola-miR-140-3p MIMAT0022553 Oryzias latipes miR-140-3p 12 80
cin-miR-5607-5p MIMAT0022341 Ciona intestinalis miR-5607-5p 12 80
bdi-miR166g-3p MIMAT0020710 Brachypodium distachyon miR166g-3p 12 80
osa-miR5143a MIMAT0021087 Oryza sativa miR5143a 12 80
pma-miR-4616 MIMAT0019650 Petromyzon marinus miR-4616 12 80
hsa-miR-4536-5p MIMAT0019078 Homo sapiens miR-4536-5p 12 80
hsa-miR-3911 MIMAT0018185 Homo sapiens miR-3911 12 80
tca-miR-3892-3p MIMAT0018885 Tribolium castaneum miR-3892-3p 12 80
tca-miR-3857-3p MIMAT0018775 Tribolium castaneum miR-3857-3p 12 80
tca-miR-3854-5p MIMAT0018764 Tribolium castaneum miR-3854-5p 12 80
tca-miR-3846-3p MIMAT0018741 Tribolium castaneum miR-3846-3p 12 80
cin-miR-4020a-5p MIMAT0016532 Ciona intestinalis miR-4020a-5p 12 80
cin-miR-92e-5p MIMAT0016421 Ciona intestinalis miR-92e-5p 12 80
aly-miR834-5p MIMAT0017617 Arabidopsis lyrata miR834-5p 12 80
bmo-miR-3336 MIMAT0015523 Bombyx mori miR-3336 12 80
bmo-miR-3294 MIMAT0015481 Bombyx mori miR-3294 12 80
mmu-miR-3064-3p MIMAT0014835 Mus musculus miR-3064-3p 12 80
bmo-miR-2761-3p MIMAT0013635 Bombyx mori miR-2761-3p 12 80
dps-miR-2559-5p MIMAT0012380 Drosophila pseudoobscura miR-2559-5p 12 80
bta-miR-2470 MIMAT0012060 Bos taurus miR-2470 12 80
bta-miR-2437 MIMAT0012011 Bos taurus miR-2437 12 80
bta-miR-2423 MIMAT0011992 Bos taurus miR-2423 12 80
cfa-miR-140 MIMAT0006689 Canis familiaris miR-140 12 80
cel-miR-1818 MIMAT0006585 Caenorhabditis elegans miR-1818 12 80
mml-miR-147a MIMAT0006206 Macaca mulatta miR-147a 12 80
gga-miR-1553-3p MIMAT0007410 Gallus gallus miR-1553-3p 12 80
oan-miR-1361-5p MIMAT0007021 Ornithorhynchus anatinus miR-1361-5p 12 80
vvi-miR479 MIMAT0005734 Vitis vinifera miR479 12 80
mdv2-miR-M14-5p MIMAT0004451 Mareks disease miR-M14-5p 12 80
ppa-miR-147 MIMAT0002478 Pan paniscus miR-147 12 80
mne-miR-147 MIMAT0002477 Macaca nemestrina miR-147 12 80
sla-miR-147 MIMAT0002476 Saguinus labiatus miR-147 12 80
ppy-miR-147a MIMAT0002475 Pongo pygmaeus miR-147a 12 80
ptr-miR-147a MIMAT0002474 Pan troglodytes miR-147a 12 80
dre-miR-92b-5p MIMAT0031955 Danio rerio miR-92b-5p 12 80
zma-miR399d-5p MIMAT0015172 Zea mays miR399d-5p 12 80
hsa-miR-147a MIMAT0000251 Homo sapiens miR-147a 12 80
>mmu-miR-7044-5p MIMAT0027992 Mus musculus miR-7044-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accacac 7
|||||||
Sbjct: 7 accacac 1
>bta-miR-3596 MIMAT0016940 Bos taurus miR-3596
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 accacac 7
|||||||
Sbjct: 2 accacac 8
>cin-miR-4020b-5p MIMAT0016533 Ciona intestinalis miR-4020b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accacac 7
|||||||
Sbjct: 7 accacac 1
>sja-miR-3504 MIMAT0016313 Schistosoma japonicum miR-3504
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accacac 7
|||||||
Sbjct: 7 accacac 1
>bta-miR-2405 MIMAT0011963 Bos taurus miR-2405
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accacac 7
|||||||
Sbjct: 8 accacac 2
>rlcv-miR-rL1-4-3p MIMAT0003431 Rhesus lymphocryptovirus
miR-rL1-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 accacac 7
|||||||
Sbjct: 2 accacac 8
>gma-miR9754 MIMAT0036385 Glycine max miR9754
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 3 accaca 8
>chi-miR-140-3p MIMAT0035961 Capra hircus miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>gsa-miR-9403-3p MIMAT0035355 Gyrodactylus salaris miR-9403-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>efu-miR-9364 MIMAT0035181 Eptesicus fuscus miR-9364
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 3 accaca 8
>eca-miR-9035 MIMAT0034577 Equus caballus miR-9035
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>sma-miR-8461-3p MIMAT0033640 Schistosoma mansoni miR-8461-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>ssa-miR-92b-5p MIMAT0032711 Salmo salar miR-92b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>ipu-miR-7559 MIMAT0029555 Ictalurus punctatus miR-7559
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccacac 7
||||||
Sbjct: 3 ccacac 8
>ipu-miR-140 MIMAT0029417 Ictalurus punctatus miR-140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>mdo-miR-7398p-5p MIMAT0028918 Monodelphis domestica
miR-7398p-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 7 ccacac 2
>mdo-miR-7398o-5p MIMAT0028908 Monodelphis domestica
miR-7398o-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 7 ccacac 2
>mdo-miR-7398k-5p MIMAT0028906 Monodelphis domestica
miR-7398k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 7 ccacac 2
>mdo-miR-7398n-5p MIMAT0028904 Monodelphis domestica
miR-7398n-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 7 ccacac 2
>mdo-miR-7260-3p MIMAT0028487 Monodelphis domestica miR-7260-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>ddi-miR-7131d MIMAT0028139 Dictyostelium discoideum miR-7131d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>hsa-miR-7108-5p MIMAT0028113 Homo sapiens miR-7108-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 6 ccacac 1
>mmu-miR-7013-3p MIMAT0027931 Mus musculus miR-7013-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccacac 7
||||||
Sbjct: 1 ccacac 6
>hsa-miR-6833-5p MIMAT0027566 Homo sapiens miR-6833-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 6 ccacac 1
>gga-miR-6612-5p MIMAT0025707 Gallus gallus miR-6612-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>pol-miR-140-3p MIMAT0025435 Paralichthys olivaceus miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>mmu-miR-6376 MIMAT0025120 Mus musculus miR-6376
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>mmu-miR-6358 MIMAT0025101 Mus musculus miR-6358
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>mml-miR-4536 MIMAT0024332 Macaca mulatta miR-4536
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>ggo-miR-140 MIMAT0024081 Gorilla gorilla miR-140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>ptr-miR-4536 MIMAT0024052 Pan troglodytes miR-4536
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>cgr-miR-140-3p MIMAT0023768 Cricetulus griseus miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>osa-miR5143b MIMAT0023289 Oryza sativa miR5143b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>sha-miR-140 MIMAT0022778 Sarcophilus harrisii miR-140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>ola-miR-140-3p MIMAT0022553 Oryzias latipes miR-140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>cin-miR-5607-5p MIMAT0022341 Ciona intestinalis miR-5607-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>bdi-miR166g-3p MIMAT0020710 Brachypodium distachyon miR166g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>osa-miR5143a MIMAT0021087 Oryza sativa miR5143a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>pma-miR-4616 MIMAT0019650 Petromyzon marinus miR-4616
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 8 accaca 3
>hsa-miR-4536-5p MIMAT0019078 Homo sapiens miR-4536-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>hsa-miR-3911 MIMAT0018185 Homo sapiens miR-3911
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 7 ccacac 2
>tca-miR-3892-3p MIMAT0018885 Tribolium castaneum miR-3892-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>tca-miR-3857-3p MIMAT0018775 Tribolium castaneum miR-3857-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>tca-miR-3854-5p MIMAT0018764 Tribolium castaneum miR-3854-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>tca-miR-3846-3p MIMAT0018741 Tribolium castaneum miR-3846-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 3 accaca 8
>cin-miR-4020a-5p MIMAT0016532 Ciona intestinalis miR-4020a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>cin-miR-92e-5p MIMAT0016421 Ciona intestinalis miR-92e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>aly-miR834-5p MIMAT0017617 Arabidopsis lyrata miR834-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>bmo-miR-3336 MIMAT0015523 Bombyx mori miR-3336
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 8 accaca 3
>bmo-miR-3294 MIMAT0015481 Bombyx mori miR-3294
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>mmu-miR-3064-3p MIMAT0014835 Mus musculus miR-3064-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccacac 7
||||||
Sbjct: 3 ccacac 8
>bmo-miR-2761-3p MIMAT0013635 Bombyx mori miR-2761-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 7 ccacac 2
>dps-miR-2559-5p MIMAT0012380 Drosophila pseudoobscura
miR-2559-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>bta-miR-2470 MIMAT0012060 Bos taurus miR-2470
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>bta-miR-2437 MIMAT0012011 Bos taurus miR-2437
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>bta-miR-2423 MIMAT0011992 Bos taurus miR-2423
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>cfa-miR-140 MIMAT0006689 Canis familiaris miR-140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accaca 6
||||||
Sbjct: 1 accaca 6
>cel-miR-1818 MIMAT0006585 Caenorhabditis elegans miR-1818
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>mml-miR-147a MIMAT0006206 Macaca mulatta miR-147a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>gga-miR-1553-3p MIMAT0007410 Gallus gallus miR-1553-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>oan-miR-1361-5p MIMAT0007021 Ornithorhynchus anatinus
miR-1361-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>vvi-miR479 MIMAT0005734 Vitis vinifera miR479
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>mdv2-miR-M14-5p MIMAT0004451 Mareks disease miR-M14-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accaca 6
||||||
Sbjct: 6 accaca 1
>ppa-miR-147 MIMAT0002478 Pan paniscus miR-147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>mne-miR-147 MIMAT0002477 Macaca nemestrina miR-147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>sla-miR-147 MIMAT0002476 Saguinus labiatus miR-147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>ppy-miR-147a MIMAT0002475 Pongo pygmaeus miR-147a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>ptr-miR-147a MIMAT0002474 Pan troglodytes miR-147a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>dre-miR-92b-5p MIMAT0031955 Danio rerio miR-92b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
>zma-miR399d-5p MIMAT0015172 Zea mays miR399d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 6 ccacac 1
>hsa-miR-147a MIMAT0000251 Homo sapiens miR-147a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccacac 7
||||||
Sbjct: 8 ccacac 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 96
Number of successful extensions: 71
Number of sequences better than 100.0: 71
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 71
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
