BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s21
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rno-miR-665 MIMAT0012844 Rattus norvegicus miR-665 16 6.9
mml-miR-665 MIMAT0012786 Macaca mulatta miR-665 16 6.9
cfa-miR-665 MIMAT0009934 Canis familiaris miR-665 16 6.9
ptr-miR-665 MIMAT0008312 Pan troglodytes miR-665 16 6.9
hsa-miR-665 MIMAT0004952 Homo sapiens miR-665 16 6.9
mmu-miR-665-3p MIMAT0003733 Mus musculus miR-665-3p 16 6.9
chi-miR-1343 MIMAT0035950 Capra hircus miR-1343 14 27
efu-miR-1343 MIMAT0035178 Eptesicus fuscus miR-1343 14 27
eca-miR-7035 MIMAT0034654 Equus caballus miR-7035 14 27
eca-miR-9076 MIMAT0034621 Equus caballus miR-9076 14 27
cfa-miR-1343 MIMAT0034357 Canis familiaris miR-1343 14 27
mmu-miR-7036b-3p MIMAT0029809 Mus musculus miR-7036b-3p 14 27
mdo-miR-7277-5p MIMAT0028528 Monodelphis domestica miR-7277-5p 14 27
gga-miR-6560-3p MIMAT0025628 Gallus gallus miR-6560-3p 14 27
ppy-miR-151b MIMAT0024394 Pongo pygmaeus miR-151b 14 27
ggo-miR-1343 MIMAT0024257 Gorilla gorilla miR-1343 14 27
cgr-miR-1343 MIMAT0023761 Cricetulus griseus miR-1343 14 27
ssc-miR-1343 MIMAT0020596 Sus scrofa miR-1343 14 27
hsa-miR-4768-3p MIMAT0019921 Homo sapiens miR-4768-3p 14 27
hsa-miR-1343-3p MIMAT0019776 Homo sapiens miR-1343-3p 14 27
hsa-miR-4459 MIMAT0018981 Homo sapiens miR-4459 14 27
esi-miR3465-3p MIMAT0017792 Ectocarpus siliculosus miR3465-3p 14 27
hsv1-miR-H16 MIMAT0014694 Herpes Simplex miR-H16 14 27
bta-miR-1343-3p MIMAT0011840 Bos taurus miR-1343-3p 14 27
tca-miR-190-3p MIMAT0019119 Tribolium castaneum miR-190-3p 14 27
oan-miR-1386 MIMAT0007162 Ornithorhynchus anatinus miR-1386 14 27
>rno-miR-665 MIMAT0012844 Rattus norvegicus miR-665
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 accaggag 8
||||||||
Sbjct: 1 accaggag 8
>mml-miR-665 MIMAT0012786 Macaca mulatta miR-665
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 accaggag 8
||||||||
Sbjct: 1 accaggag 8
>cfa-miR-665 MIMAT0009934 Canis familiaris miR-665
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 accaggag 8
||||||||
Sbjct: 1 accaggag 8
>ptr-miR-665 MIMAT0008312 Pan troglodytes miR-665
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 accaggag 8
||||||||
Sbjct: 1 accaggag 8
>hsa-miR-665 MIMAT0004952 Homo sapiens miR-665
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 accaggag 8
||||||||
Sbjct: 1 accaggag 8
>mmu-miR-665-3p MIMAT0003733 Mus musculus miR-665-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 accaggag 8
||||||||
Sbjct: 1 accaggag 8
>chi-miR-1343 MIMAT0035950 Capra hircus miR-1343
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaggag 8
|||||||
Sbjct: 7 ccaggag 1
>efu-miR-1343 MIMAT0035178 Eptesicus fuscus miR-1343
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaggag 8
|||||||
Sbjct: 8 ccaggag 2
>eca-miR-7035 MIMAT0034654 Equus caballus miR-7035
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accagga 7
|||||||
Sbjct: 7 accagga 1
>eca-miR-9076 MIMAT0034621 Equus caballus miR-9076
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaggag 8
|||||||
Sbjct: 8 ccaggag 2
>cfa-miR-1343 MIMAT0034357 Canis familiaris miR-1343
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaggag 8
|||||||
Sbjct: 7 ccaggag 1
>mmu-miR-7036b-3p MIMAT0029809 Mus musculus miR-7036b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accagga 7
|||||||
Sbjct: 8 accagga 2
>mdo-miR-7277-5p MIMAT0028528 Monodelphis domestica miR-7277-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accagga 7
|||||||
Sbjct: 7 accagga 1
>gga-miR-6560-3p MIMAT0025628 Gallus gallus miR-6560-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 accagga 7
|||||||
Sbjct: 2 accagga 8
>ppy-miR-151b MIMAT0024394 Pongo pygmaeus miR-151b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaggag 8
|||||||
Sbjct: 2 ccaggag 8
>ggo-miR-1343 MIMAT0024257 Gorilla gorilla miR-1343
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaggag 8
|||||||
Sbjct: 7 ccaggag 1
>cgr-miR-1343 MIMAT0023761 Cricetulus griseus miR-1343
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaggag 8
|||||||
Sbjct: 7 ccaggag 1
>ssc-miR-1343 MIMAT0020596 Sus scrofa miR-1343
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaggag 8
|||||||
Sbjct: 7 ccaggag 1
>hsa-miR-4768-3p MIMAT0019921 Homo sapiens miR-4768-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaggag 8
|||||||
Sbjct: 1 ccaggag 7
>hsa-miR-1343-3p MIMAT0019776 Homo sapiens miR-1343-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaggag 8
|||||||
Sbjct: 7 ccaggag 1
>hsa-miR-4459 MIMAT0018981 Homo sapiens miR-4459
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaggag 8
|||||||
Sbjct: 1 ccaggag 7
>esi-miR3465-3p MIMAT0017792 Ectocarpus siliculosus miR3465-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accagga 7
|||||||
Sbjct: 7 accagga 1
>hsv1-miR-H16 MIMAT0014694 Herpes Simplex miR-H16
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaggag 8
|||||||
Sbjct: 1 ccaggag 7
>bta-miR-1343-3p MIMAT0011840 Bos taurus miR-1343-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaggag 8
|||||||
Sbjct: 7 ccaggag 1
>tca-miR-190-3p MIMAT0019119 Tribolium castaneum miR-190-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccaggag 8
|||||||
Sbjct: 2 ccaggag 8
>oan-miR-1386 MIMAT0007162 Ornithorhynchus anatinus miR-1386
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccaggag 8
|||||||
Sbjct: 7 ccaggag 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 183
Number of extensions: 151
Number of successful extensions: 117
Number of sequences better than 100.0: 26
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 26
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
