BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rlcv-miR-rl1-15-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

rlcv-miR-rL1-15-5p MIMAT0019091 Rhesus lymphocryptovirus miR-rL1...    16   6.9  
rno-miR-1896 MIMAT0035732 Rattus norvegicus miR-1896                   14      27
bbe-miR-2058-3p MIMAT0031616 Branchiostoma belcheri miR-2058-3p        14      27
ptc-miR7836 MIMAT0030408 Populus trichocarpa miR7836                   14      27
ptc-miR7837 MIMAT0030393 Populus trichocarpa miR7837                   14      27
mdo-miR-92a-2-5p MIMAT0031050 Monodelphis domestica miR-92a-2-5p       14      27
mmu-miR-7000-3p MIMAT0027903 Mus musculus miR-7000-3p                  14      27
hsa-miR-6769b-5p MIMAT0027620 Homo sapiens miR-6769b-5p                14      27
hsa-miR-6769a-5p MIMAT0027438 Homo sapiens miR-6769a-5p                14      27
hsa-miR-6766-5p MIMAT0027432 Homo sapiens miR-6766-5p                  14      27
hsa-miR-6756-5p MIMAT0027412 Homo sapiens miR-6756-5p                  14      27
cin-miR-4163-3p MIMAT0016771 Ciona intestinalis miR-4163-3p            14      27
aly-miR394a-3p MIMAT0017544 Arabidopsis lyrata miR394a-3p              14      27
bfl-miR-2058-3p MIMAT0019167 Branchiostoma floridae miR-2058-3p        14      27
mml-miR-92a-5p MIMAT0026809 Macaca mulatta miR-92a-5p                  14      27
oan-miR-92a-1-5p MIMAT0006857 Ornithorhynchus anatinus miR-92a-1-5p    14      27
hsa-miR-92a-2-5p MIMAT0004508 Homo sapiens miR-92a-2-5p                14      27
>rlcv-miR-rL1-15-5p MIMAT0019091 Rhesus lymphocryptovirus
         miR-rL1-15-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 acccaccc 8
         ||||||||
Sbjct: 1 acccaccc 8
>rno-miR-1896 MIMAT0035732 Rattus norvegicus miR-1896
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 acccacc 7
         |||||||
Sbjct: 8 acccacc 2
>bbe-miR-2058-3p MIMAT0031616 Branchiostoma belcheri miR-2058-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cccaccc 8
         |||||||
Sbjct: 7 cccaccc 1
>ptc-miR7836 MIMAT0030408 Populus trichocarpa miR7836
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cccaccc 8
         |||||||
Sbjct: 8 cccaccc 2
>ptc-miR7837 MIMAT0030393 Populus trichocarpa miR7837
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cccaccc 8
         |||||||
Sbjct: 8 cccaccc 2
>mdo-miR-92a-2-5p MIMAT0031050 Monodelphis domestica
         miR-92a-2-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cccaccc 8
         |||||||
Sbjct: 7 cccaccc 1
>mmu-miR-7000-3p MIMAT0027903 Mus musculus miR-7000-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 acccacc 7
         |||||||
Sbjct: 2 acccacc 8
>hsa-miR-6769b-5p MIMAT0027620 Homo sapiens miR-6769b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 acccacc 7
         |||||||
Sbjct: 8 acccacc 2
>hsa-miR-6769a-5p MIMAT0027438 Homo sapiens miR-6769a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 acccacc 7
         |||||||
Sbjct: 8 acccacc 2
>hsa-miR-6766-5p MIMAT0027432 Homo sapiens miR-6766-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cccaccc 8
         |||||||
Sbjct: 8 cccaccc 2
>hsa-miR-6756-5p MIMAT0027412 Homo sapiens miR-6756-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cccaccc 8
         |||||||
Sbjct: 8 cccaccc 2
>cin-miR-4163-3p MIMAT0016771 Ciona intestinalis miR-4163-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 acccacc 7
         |||||||
Sbjct: 1 acccacc 7
>aly-miR394a-3p MIMAT0017544 Arabidopsis lyrata miR394a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 acccacc 7
         |||||||
Sbjct: 8 acccacc 2
>bfl-miR-2058-3p MIMAT0019167 Branchiostoma floridae miR-2058-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cccaccc 8
         |||||||
Sbjct: 7 cccaccc 1
>mml-miR-92a-5p MIMAT0026809 Macaca mulatta miR-92a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cccaccc 8
         |||||||
Sbjct: 7 cccaccc 1
>oan-miR-92a-1-5p MIMAT0006857 Ornithorhynchus anatinus
         miR-92a-1-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cccaccc 8
         |||||||
Sbjct: 7 cccaccc 1
>hsa-miR-92a-2-5p MIMAT0004508 Homo sapiens miR-92a-2-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cccaccc 8
         |||||||
Sbjct: 7 cccaccc 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 221
Number of extensions: 203
Number of successful extensions: 142
Number of sequences better than 100.0: 17
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)