BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-11-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

eca-miR-8908e MIMAT0034702 Equus caballus miR-8908e                    14      20
hsa-miR-5589-5p MIMAT0022297 Homo sapiens miR-5589-5p                  14      20
ahy-miR3516 MIMAT0016342 Arachis hypogaea miR3516                      14      20
esi-miR3454g-5p MIMAT0017745 Ectocarpus siliculosus miR3454g-5p        14      20
bta-miR-320b MIMAT0011991 Bos taurus miR-320b                          14      20
kshv-miR-K12-9-5p MIMAT0002184 Kaposi sarcoma-associated miR-K12...    14      20
oha-miR-204-1-3p MIMAT0036813 Ophiophagus hannah miR-204-1-3p          12      80
oha-miR-199b-5p MIMAT0036791 Ophiophagus hannah miR-199b-5p            12      80
chi-miR-204-3p MIMAT0036051 Capra hircus miR-204-3p                    12      80
eca-miR-9181 MIMAT0034762 Equus caballus miR-9181                      12      80
eca-miR-8943 MIMAT0034472 Equus caballus miR-8943                      12      80
cfa-miR-8901 MIMAT0034411 Canis familiaris miR-8901                    12      80
cfa-miR-8872 MIMAT0034369 Canis familiaris miR-8872                    12      80
pxy-miR-8536a MIMAT0033816 Plutella xylostella miR-8536a               12      80
str-miR-7880r-5p MIMAT0033386 Strongyloides ratti miR-7880r-5p         12      80
ppc-miR-2235c-5p MIMAT0032950 Pristionchus pacificus miR-2235c-5p      12      80
ssa-miR-92a-3-5p MIMAT0032709 Salmo salar miR-92a-3-5p                 12      80
ssa-miR-204-4-3p MIMAT0032491 Salmo salar miR-204-4-3p                 12      80
ssa-miR-204-3-3p MIMAT0032490 Salmo salar miR-204-3-3p                 12      80
stu-miR8008b MIMAT0030931 Solanum tuberosum miR8008b                   12      80
stu-miR7999-5p MIMAT0031189 Solanum tuberosum miR7999-5p               12      80
hsa-miR-7977 MIMAT0031180 Homo sapiens miR-7977                        12      80
mmu-miR-7688-5p MIMAT0029906 Mus musculus miR-7688-5p                  12      80
mmu-miR-7669-3p MIMAT0029845 Mus musculus miR-7669-3p                  12      80
mdo-miR-1544b-5p MIMAT0028744 Monodelphis domestica miR-1544b-5p       12      80
mdo-miR-7315-3p MIMAT0028631 Monodelphis domestica miR-7315-3p         12      80
mdo-miR-7293-3p MIMAT0028571 Monodelphis domestica miR-7293-3p         12      80
mml-miR-500b-3p MIMAT0028237 Macaca mulatta miR-500b-3p                12      80
mmu-miR-6975-5p MIMAT0027852 Mus musculus miR-6975-5p                  12      80
hsa-miR-6742-3p MIMAT0027386 Homo sapiens miR-6742-3p                  12      80
hsa-miR-6736-5p MIMAT0027373 Homo sapiens miR-6736-5p                  12      80
gga-miR-6641-3p MIMAT0025738 Gallus gallus miR-6641-3p                 12      80
gga-miR-6637-3p MIMAT0025733 Gallus gallus miR-6637-3p                 12      80
gga-miR-6593-5p MIMAT0025686 Gallus gallus miR-6593-5p                 12      80
gga-miR-6588-3p MIMAT0025680 Gallus gallus miR-6588-3p                 12      80
prv-miR-LLT11b MIMAT0025316 Pseudorabies virus miR-LLT11b              12      80
prv-miR-LLT11a MIMAT0025315 Pseudorabies virus miR-LLT11a              12      80
ptc-miR6446 MIMAT0025249 Populus trichocarpa miR6446                   12      80
cgr-miR-92a-5p MIMAT0024009 Cricetulus griseus miR-92a-5p              12      80
hsa-miR-5787 MIMAT0023252 Homo sapiens miR-5787                        12      80
gma-miR4416c MIMAT0023172 Glycine max miR4416c                         12      80
sha-miR-204 MIMAT0022790 Sarcophilus harrisii miR-204                  12      80
aca-miR-204a-3p MIMAT0021854 Anolis carolinensis miR-204a-3p           12      80
cel-miR-4937 MIMAT0020143 Caenorhabditis elegans miR-4937              12      80
hsa-miR-4731-5p MIMAT0019853 Homo sapiens miR-4731-5p                  12      80
hsa-miR-4726-3p MIMAT0019846 Homo sapiens miR-4726-3p                  12      80
hsa-miR-4530 MIMAT0019069 Homo sapiens miR-4530                        12      80
hsa-miR-4507 MIMAT0019044 Homo sapiens miR-4507                        12      80
hsa-miR-4505 MIMAT0019041 Homo sapiens miR-4505                        12      80
hsa-miR-4486 MIMAT0019020 Homo sapiens miR-4486                        12      80
hsa-miR-500b-3p MIMAT0027032 Homo sapiens miR-500b-3p                  12      80
ppy-miR-612 MIMAT0016053 Pongo pygmaeus miR-612                        12      80
esi-miR3454e-5p MIMAT0017769 Ectocarpus siliculosus miR3454e-5p        12      80
esi-miR3454b-5p MIMAT0017759 Ectocarpus siliculosus miR3454b-5p        12      80
esi-miR3454c-5p MIMAT0017751 Ectocarpus siliculosus miR3454c-5p        12      80
esi-miR3454a-5p MIMAT0017747 Ectocarpus siliculosus miR3454a-5p        12      80
mmu-miR-3090-5p MIMAT0014901 Mus musculus miR-3090-5p                  12      80
mmu-miR-3083-5p MIMAT0014874 Mus musculus miR-3083-5p                  12      80
mmu-miR-3078-3p MIMAT0014865 Mus musculus miR-3078-3p                  12      80
cqu-miR-1174 MIMAT0014354 Culex quinquefasciatus miR-1174              12      80
cte-miR-2720-5p MIMAT0013554 Capitella teleta miR-2720-5p              12      80
dsi-miR-1000-3p MIMAT0012458 Drosophila simulans miR-1000-3p           12      80
dps-miR-1000-3p MIMAT0012266 Drosophila pseudoobscura miR-1000-3p      12      80
dps-miR-311-5p MIMAT0012241 Drosophila pseudoobscura miR-311-5p        12      80
mmu-miR-2136 MIMAT0011212 Mus musculus miR-2136                        12      80
bfl-miR-2073 MIMAT0010001 Branchiostoma floridae miR-2073              12      80
ptr-miR-612 MIMAT0008274 Pan troglodytes miR-612                       12      80
mml-miR-501-3p MIMAT0026889 Macaca mulatta miR-501-3p                  12      80
gga-miR-1587 MIMAT0007449 Gallus gallus miR-1587                       12      80
oan-miR-1419e-5p MIMAT0007262 Ornithorhynchus anatinus miR-1419e-5p    12      80
oan-miR-1349 MIMAT0006934 Ornithorhynchus anatinus miR-1349            12      80
oan-miR-1343-3p MIMAT0006875 Ornithorhynchus anatinus miR-1343-3p      12      80
dme-miR-1000-3p MIMAT0020900 Drosophila melanogaster miR-1000-3p       12      80
ath-miR832-5p MIMAT0004250 Arabidopsis thaliana miR832-5p              12      80
sme-miR-749 MIMAT0004016 Schmidtea mediterranea miR-749                12      80
hsa-miR-619-5p MIMAT0026622 Homo sapiens miR-619-5p                    12      80
hsa-miR-612 MIMAT0003280 Homo sapiens miR-612                          12      80
kshv-miR-K12-9-3p MIMAT0002185 Kaposi sarcoma-associated miR-K12...    12      80
dre-miR-204-2-3p MIMAT0031987 Danio rerio miR-204-2-3p                 12      80
rno-miR-204-3p MIMAT0004739 Rattus norvegicus miR-204-3p               12      80
hsa-miR-204-3p MIMAT0022693 Homo sapiens miR-204-3p                    12      80
mmu-miR-204-3p MIMAT0017002 Mus musculus miR-204-3p                    12      80
>eca-miR-8908e MIMAT0034702 Equus caballus miR-8908e
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 acccagc 7
         |||||||
Sbjct: 2 acccagc 8
>hsa-miR-5589-5p MIMAT0022297 Homo sapiens miR-5589-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 acccagc 7
         |||||||
Sbjct: 8 acccagc 2
>ahy-miR3516 MIMAT0016342 Arachis hypogaea miR3516
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 acccagc 7
         |||||||
Sbjct: 7 acccagc 1
>esi-miR3454g-5p MIMAT0017745 Ectocarpus siliculosus miR3454g-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 acccagc 7
         |||||||
Sbjct: 2 acccagc 8
>bta-miR-320b MIMAT0011991 Bos taurus miR-320b
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 acccagc 7
         |||||||
Sbjct: 8 acccagc 2
>kshv-miR-K12-9-5p MIMAT0002184 Kaposi sarcoma-associated
         miR-K12-9-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 acccagc 7
         |||||||
Sbjct: 1 acccagc 7
>oha-miR-204-1-3p MIMAT0036813 Ophiophagus hannah miR-204-1-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>oha-miR-199b-5p MIMAT0036791 Ophiophagus hannah miR-199b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 1 cccagc 6
>chi-miR-204-3p MIMAT0036051 Capra hircus miR-204-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>eca-miR-9181 MIMAT0034762 Equus caballus miR-9181
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>eca-miR-8943 MIMAT0034472 Equus caballus miR-8943
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>cfa-miR-8901 MIMAT0034411 Canis familiaris miR-8901
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 acccag 6
         ||||||
Sbjct: 3 acccag 8
>cfa-miR-8872 MIMAT0034369 Canis familiaris miR-8872
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 8 acccag 3
>pxy-miR-8536a MIMAT0033816 Plutella xylostella miR-8536a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 3 cccagc 8
>str-miR-7880r-5p MIMAT0033386 Strongyloides ratti miR-7880r-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>ppc-miR-2235c-5p MIMAT0032950 Pristionchus pacificus
         miR-2235c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 acccag 6
         ||||||
Sbjct: 3 acccag 8
>ssa-miR-92a-3-5p MIMAT0032709 Salmo salar miR-92a-3-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>ssa-miR-204-4-3p MIMAT0032491 Salmo salar miR-204-4-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>ssa-miR-204-3-3p MIMAT0032490 Salmo salar miR-204-3-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>stu-miR8008b MIMAT0030931 Solanum tuberosum miR8008b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 acccag 6
         ||||||
Sbjct: 3 acccag 8
>stu-miR7999-5p MIMAT0031189 Solanum tuberosum miR7999-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 6 acccag 1
>hsa-miR-7977 MIMAT0031180 Homo sapiens miR-7977
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 3 cccagc 8
>mmu-miR-7688-5p MIMAT0029906 Mus musculus miR-7688-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>mmu-miR-7669-3p MIMAT0029845 Mus musculus miR-7669-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>mdo-miR-1544b-5p MIMAT0028744 Monodelphis domestica
         miR-1544b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 acccag 6
         ||||||
Sbjct: 3 acccag 8
>mdo-miR-7315-3p MIMAT0028631 Monodelphis domestica miR-7315-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 acccag 6
         ||||||
Sbjct: 1 acccag 6
>mdo-miR-7293-3p MIMAT0028571 Monodelphis domestica miR-7293-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>mml-miR-500b-3p MIMAT0028237 Macaca mulatta miR-500b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 acccag 6
         ||||||
Sbjct: 3 acccag 8
>mmu-miR-6975-5p MIMAT0027852 Mus musculus miR-6975-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>hsa-miR-6742-3p MIMAT0027386 Homo sapiens miR-6742-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 8 acccag 3
>hsa-miR-6736-5p MIMAT0027373 Homo sapiens miR-6736-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 6 acccag 1
>gga-miR-6641-3p MIMAT0025738 Gallus gallus miR-6641-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>gga-miR-6637-3p MIMAT0025733 Gallus gallus miR-6637-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>gga-miR-6593-5p MIMAT0025686 Gallus gallus miR-6593-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 7 cccagc 2
>gga-miR-6588-3p MIMAT0025680 Gallus gallus miR-6588-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>prv-miR-LLT11b MIMAT0025316 Pseudorabies virus miR-LLT11b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>prv-miR-LLT11a MIMAT0025315 Pseudorabies virus miR-LLT11a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>ptc-miR6446 MIMAT0025249 Populus trichocarpa miR6446
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>cgr-miR-92a-5p MIMAT0024009 Cricetulus griseus miR-92a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>hsa-miR-5787 MIMAT0023252 Homo sapiens miR-5787
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>gma-miR4416c MIMAT0023172 Glycine max miR4416c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 6 acccag 1
>sha-miR-204 MIMAT0022790 Sarcophilus harrisii miR-204
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>aca-miR-204a-3p MIMAT0021854 Anolis carolinensis miR-204a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>cel-miR-4937 MIMAT0020143 Caenorhabditis elegans miR-4937
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 6 acccag 1
>hsa-miR-4731-5p MIMAT0019853 Homo sapiens miR-4731-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 7 cccagc 2
>hsa-miR-4726-3p MIMAT0019846 Homo sapiens miR-4726-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 acccag 6
         ||||||
Sbjct: 1 acccag 6
>hsa-miR-4530 MIMAT0019069 Homo sapiens miR-4530
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 1 cccagc 6
>hsa-miR-4507 MIMAT0019044 Homo sapiens miR-4507
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 6 acccag 1
>hsa-miR-4505 MIMAT0019041 Homo sapiens miR-4505
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>hsa-miR-4486 MIMAT0019020 Homo sapiens miR-4486
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>hsa-miR-500b-3p MIMAT0027032 Homo sapiens miR-500b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 acccag 6
         ||||||
Sbjct: 3 acccag 8
>ppy-miR-612 MIMAT0016053 Pongo pygmaeus miR-612
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>esi-miR3454e-5p MIMAT0017769 Ectocarpus siliculosus miR3454e-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 3 cccagc 8
>esi-miR3454b-5p MIMAT0017759 Ectocarpus siliculosus miR3454b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 3 cccagc 8
>esi-miR3454c-5p MIMAT0017751 Ectocarpus siliculosus miR3454c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 3 cccagc 8
>esi-miR3454a-5p MIMAT0017747 Ectocarpus siliculosus miR3454a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 3 cccagc 8
>mmu-miR-3090-5p MIMAT0014901 Mus musculus miR-3090-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 8 acccag 3
>mmu-miR-3083-5p MIMAT0014874 Mus musculus miR-3083-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>mmu-miR-3078-3p MIMAT0014865 Mus musculus miR-3078-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>cqu-miR-1174 MIMAT0014354 Culex quinquefasciatus miR-1174
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 6 acccag 1
>cte-miR-2720-5p MIMAT0013554 Capitella teleta miR-2720-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 6 acccag 1
>dsi-miR-1000-3p MIMAT0012458 Drosophila simulans miR-1000-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>dps-miR-1000-3p MIMAT0012266 Drosophila pseudoobscura
         miR-1000-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>dps-miR-311-5p MIMAT0012241 Drosophila pseudoobscura miR-311-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>mmu-miR-2136 MIMAT0011212 Mus musculus miR-2136
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 6 acccag 1
>bfl-miR-2073 MIMAT0010001 Branchiostoma floridae miR-2073
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 8 acccag 3
>ptr-miR-612 MIMAT0008274 Pan troglodytes miR-612
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>mml-miR-501-3p MIMAT0026889 Macaca mulatta miR-501-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 acccag 6
         ||||||
Sbjct: 3 acccag 8
>gga-miR-1587 MIMAT0007449 Gallus gallus miR-1587
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>oan-miR-1419e-5p MIMAT0007262 Ornithorhynchus anatinus
         miR-1419e-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>oan-miR-1349 MIMAT0006934 Ornithorhynchus anatinus miR-1349
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>oan-miR-1343-3p MIMAT0006875 Ornithorhynchus anatinus
         miR-1343-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>dme-miR-1000-3p MIMAT0020900 Drosophila melanogaster
         miR-1000-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 8 cccagc 3
>ath-miR832-5p MIMAT0004250 Arabidopsis thaliana miR832-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 7 cccagc 2
>sme-miR-749 MIMAT0004016 Schmidtea mediterranea miR-749
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>hsa-miR-619-5p MIMAT0026622 Homo sapiens miR-619-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>hsa-miR-612 MIMAT0003280 Homo sapiens miR-612
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>kshv-miR-K12-9-3p MIMAT0002185 Kaposi sarcoma-associated
         miR-K12-9-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acccag 6
         ||||||
Sbjct: 6 acccag 1
>dre-miR-204-2-3p MIMAT0031987 Danio rerio miR-204-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>rno-miR-204-3p MIMAT0004739 Rattus norvegicus miR-204-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>hsa-miR-204-3p MIMAT0022693 Homo sapiens miR-204-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
>mmu-miR-204-3p MIMAT0017002 Mus musculus miR-204-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cccagc 7
         ||||||
Sbjct: 6 cccagc 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 114
Number of extensions: 108
Number of successful extensions: 82
Number of sequences better than 100.0: 82
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 82
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)