VIRmiRNA

BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ohv2-miR-17-2
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-7003-3p MIMAT0027911 Mus musculus miR-7003-3p                  14      27
hsa-miR-5587-3p MIMAT0022290 Homo sapiens miR-5587-3p                  14      27
bfl-miR-4903 MIMAT0020498 Branchiostoma floridae miR-4903              14      27
pma-miR-4544-3p MIMAT0019574 Petromyzon marinus miR-4544-3p            14      27
hsa-miR-4532 MIMAT0019071 Homo sapiens miR-4532                        14      27
oan-miR-1394 MIMAT0007196 Ornithorhynchus anatinus miR-1394            14      27
hsa-miR-1247-3p MIMAT0022721 Homo sapiens miR-1247-3p                  14      27

>mmu-miR-7003-3p MIMAT0027911 Mus musculus miR-7003-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccccggg 8
         |||||||
Sbjct: 1 ccccggg 7



>hsa-miR-5587-3p MIMAT0022290 Homo sapiens miR-5587-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccccggg 8
         |||||||
Sbjct: 2 ccccggg 8



>bfl-miR-4903 MIMAT0020498 Branchiostoma floridae miR-4903
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 accccgg 7
         |||||||
Sbjct: 2 accccgg 8



>pma-miR-4544-3p MIMAT0019574 Petromyzon marinus miR-4544-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 accccgg 7
         |||||||
Sbjct: 8 accccgg 2



>hsa-miR-4532 MIMAT0019071 Homo sapiens miR-4532
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccccggg 8
         |||||||
Sbjct: 1 ccccggg 7




 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ccccggg 8
         |||||||
Sbjct: 8 ccccggg 2



>oan-miR-1394 MIMAT0007196 Ornithorhynchus anatinus miR-1394
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ccccggg 8
         |||||||
Sbjct: 7 ccccggg 1



>hsa-miR-1247-3p MIMAT0022721 Homo sapiens miR-1247-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccccggg 8
         |||||||
Sbjct: 1 ccccggg 7



  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 83
Number of extensions: 75
Number of successful extensions: 59
Number of sequences better than 100.0: 7
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)