BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR7722-3p MIMAT0030171 Brachypodium distachyon miR7722-3p 14 20
gga-miR-1570 MIMAT0007430 Gallus gallus miR-1570 14 20
ppt-miR902h-3p MIMAT0005080 Physcomitrella patens miR902h-3p 14 20
ata-miR528-5p MIMAT0037192 Aegilops tauschii miR528-5p 12 80
ssc-miR-9802-3p MIMAT0037020 Sus scrofa miR-9802-3p 12 80
mmu-miR-3154 MIMAT0035714 Mus musculus miR-3154 12 80
gsa-miR-2d-5p MIMAT0035298 Gyrodactylus salaris miR-2d-5p 12 80
gsa-miR-278-5p MIMAT0035294 Gyrodactylus salaris miR-278-5p 12 80
efu-miR-9314 MIMAT0034989 Eptesicus fuscus miR-9314 12 80
eca-miR-9134 MIMAT0034685 Equus caballus miR-9134 12 80
eca-miR-9097 MIMAT0034643 Equus caballus miR-9097 12 80
ppe-miR8130-3p MIMAT0031557 Prunus persica miR8130-3p 12 80
prd-miR-235-5p MIMAT0030602 Panagrellus redivivus miR-235-5p 12 80
mes-miR395e MIMAT0029272 Manihot esculenta miR395e 12 80
mdo-miR-7276-5p MIMAT0028526 Monodelphis domestica miR-7276-5p 12 80
hsa-miR-6886-3p MIMAT0027673 Homo sapiens miR-6886-3p 12 80
hsa-miR-6864-5p MIMAT0027628 Homo sapiens miR-6864-5p 12 80
hsa-miR-6832-3p MIMAT0027565 Homo sapiens miR-6832-3p 12 80
hsa-miR-6756-3p MIMAT0027413 Homo sapiens miR-6756-3p 12 80
hsa-miR-6734-3p MIMAT0027370 Homo sapiens miR-6734-3p 12 80
bta-miR-3154 MIMAT0025529 Bos taurus miR-3154 12 80
mml-miR-3154 MIMAT0024627 Macaca mulatta miR-3154 12 80
ptr-miR-3154 MIMAT0024608 Pan troglodytes miR-3154 12 80
ppy-miR-3154 MIMAT0024402 Pongo pygmaeus miR-3154 12 80
sly-miR6022 MIMAT0023590 Solanum lycopersicum miR6022 12 80
stu-miR6022 MIMAT0023589 Solanum tuberosum miR6022 12 80
cel-miR-5546-5p MIMAT0022183 Caenorhabditis elegans miR-5546-5p 12 80
aca-miR-5412-5p MIMAT0022030 Anolis carolinensis miR-5412-5p 12 80
aca-miR-205b MIMAT0021856 Anolis carolinensis miR-205b 12 80
ssp-miR528 MIMAT0020288 Saccharum sp. miR528 12 80
bdi-miR528-5p MIMAT0020662 Brachypodium distachyon miR528-5p 12 80
hsa-miR-4780 MIMAT0019939 Homo sapiens miR-4780 12 80
pma-miR-205b MIMAT0019519 Petromyzon marinus miR-205b 12 80
pma-miR-22a-5p MIMAT0019398 Petromyzon marinus miR-22a-5p 12 80
oar-miR-1197-5p MIMAT0019257 Ovis aries miR-1197-5p 12 80
csi-miR3952 MIMAT0018494 Citrus sinensis miR3952 12 80
mghv-miR-M1-12-5p MIMAT0018170 Mouse gammaherpesvirus miR-M1-12-5p 12 80
cin-miR-4006f-3p MIMAT0016483 Ciona intestinalis miR-4006f-3p 12 80
sja-miR-2c-5p MIMAT0016276 Schistosoma japonicum miR-2c-5p 12 80
ppy-miR-553 MIMAT0015999 Pongo pygmaeus miR-553 12 80
hsa-miR-3202 MIMAT0015089 Homo sapiens miR-3202 12 80
hsa-miR-3154 MIMAT0015028 Homo sapiens miR-3154 12 80
hsa-miR-3127-3p MIMAT0019201 Homo sapiens miR-3127-3p 12 80
tgu-miR-205 MIMAT0014616 Taeniopygia guttata miR-205 12 80
rlcv-miR-rL1-20-5p MIMAT0014065 Rhesus lymphocryptovirus miR-rL1... 12 80
sbi-miR528 MIMAT0014048 Sorghum bicolor miR528 12 80
zma-miR528b-5p MIMAT0014029 Zea mays miR528b-5p 12 80
zma-miR528a-5p MIMAT0014028 Zea mays miR528a-5p 12 80
bmo-miR-2780b MIMAT0013732 Bombyx mori miR-2780b 12 80
bmo-miR-2780a-5p MIMAT0013669 Bombyx mori miR-2780a-5p 12 80
aqc-miR395a MIMAT0012575 Aquilegia caerulea miR395a 12 80
aqc-miR395b MIMAT0012574 Aquilegia caerulea miR395b 12 80
mtr-miR2598 MIMAT0013301 Medicago truncatula miR2598 12 80
aqu-miR-2020-3p MIMAT0009699 Amphimedon queenslandica miR-2020-3p 12 80
osa-miR528-5p MIMAT0002884 Oryza sativa miR528-5p 12 80
ptc-miR395a MIMAT0002021 Populus trichocarpa miR395a 12 80
gga-miR-205b MIMAT0001164 Gallus gallus miR-205b 12 80
rno-miR-336-5p MIMAT0000576 Rattus norvegicus miR-336-5p 12 80
>bdi-miR7722-3p MIMAT0030171 Brachypodium distachyon miR7722-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acccttc 7
|||||||
Sbjct: 7 acccttc 1
>gga-miR-1570 MIMAT0007430 Gallus gallus miR-1570
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acccttc 7
|||||||
Sbjct: 7 acccttc 1
>ppt-miR902h-3p MIMAT0005080 Physcomitrella patens miR902h-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acccttc 7
|||||||
Sbjct: 8 acccttc 2
>ata-miR528-5p MIMAT0037192 Aegilops tauschii miR528-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>ssc-miR-9802-3p MIMAT0037020 Sus scrofa miR-9802-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accctt 6
||||||
Sbjct: 8 accctt 3
>mmu-miR-3154 MIMAT0035714 Mus musculus miR-3154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>gsa-miR-2d-5p MIMAT0035298 Gyrodactylus salaris miR-2d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accctt 6
||||||
Sbjct: 1 accctt 6
>gsa-miR-278-5p MIMAT0035294 Gyrodactylus salaris miR-278-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accctt 6
||||||
Sbjct: 8 accctt 3
>efu-miR-9314 MIMAT0034989 Eptesicus fuscus miR-9314
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accctt 6
||||||
Sbjct: 3 accctt 8
>eca-miR-9134 MIMAT0034685 Equus caballus miR-9134
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>eca-miR-9097 MIMAT0034643 Equus caballus miR-9097
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>ppe-miR8130-3p MIMAT0031557 Prunus persica miR8130-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 1 cccttc 6
>prd-miR-235-5p MIMAT0030602 Panagrellus redivivus miR-235-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>mes-miR395e MIMAT0029272 Manihot esculenta miR395e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>mdo-miR-7276-5p MIMAT0028526 Monodelphis domestica miR-7276-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 1 cccttc 6
>hsa-miR-6886-3p MIMAT0027673 Homo sapiens miR-6886-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 3 cccttc 8
>hsa-miR-6864-5p MIMAT0027628 Homo sapiens miR-6864-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>hsa-miR-6832-3p MIMAT0027565 Homo sapiens miR-6832-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accctt 6
||||||
Sbjct: 1 accctt 6
>hsa-miR-6756-3p MIMAT0027413 Homo sapiens miR-6756-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 3 cccttc 8
>hsa-miR-6734-3p MIMAT0027370 Homo sapiens miR-6734-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 1 cccttc 6
>bta-miR-3154 MIMAT0025529 Bos taurus miR-3154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>mml-miR-3154 MIMAT0024627 Macaca mulatta miR-3154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>ptr-miR-3154 MIMAT0024608 Pan troglodytes miR-3154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>ppy-miR-3154 MIMAT0024402 Pongo pygmaeus miR-3154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>sly-miR6022 MIMAT0023590 Solanum lycopersicum miR6022
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>stu-miR6022 MIMAT0023589 Solanum tuberosum miR6022
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>cel-miR-5546-5p MIMAT0022183 Caenorhabditis elegans miR-5546-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accctt 6
||||||
Sbjct: 1 accctt 6
>aca-miR-5412-5p MIMAT0022030 Anolis carolinensis miR-5412-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accctt 6
||||||
Sbjct: 6 accctt 1
>aca-miR-205b MIMAT0021856 Anolis carolinensis miR-205b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 1 cccttc 6
>ssp-miR528 MIMAT0020288 Saccharum sp. miR528
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>bdi-miR528-5p MIMAT0020662 Brachypodium distachyon miR528-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>hsa-miR-4780 MIMAT0019939 Homo sapiens miR-4780
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accctt 6
||||||
Sbjct: 1 accctt 6
>pma-miR-205b MIMAT0019519 Petromyzon marinus miR-205b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 1 cccttc 6
>pma-miR-22a-5p MIMAT0019398 Petromyzon marinus miR-22a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 3 cccttc 8
>oar-miR-1197-5p MIMAT0019257 Ovis aries miR-1197-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 1 cccttc 6
>csi-miR3952 MIMAT0018494 Citrus sinensis miR3952
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 7 cccttc 2
>mghv-miR-M1-12-5p MIMAT0018170 Mouse gammaherpesvirus
miR-M1-12-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accctt 6
||||||
Sbjct: 6 accctt 1
>cin-miR-4006f-3p MIMAT0016483 Ciona intestinalis miR-4006f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accctt 6
||||||
Sbjct: 1 accctt 6
>sja-miR-2c-5p MIMAT0016276 Schistosoma japonicum miR-2c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accctt 6
||||||
Sbjct: 1 accctt 6
>ppy-miR-553 MIMAT0015999 Pongo pygmaeus miR-553
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accctt 6
||||||
Sbjct: 8 accctt 3
>hsa-miR-3202 MIMAT0015089 Homo sapiens miR-3202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>hsa-miR-3154 MIMAT0015028 Homo sapiens miR-3154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>hsa-miR-3127-3p MIMAT0019201 Homo sapiens miR-3127-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 3 cccttc 8
>tgu-miR-205 MIMAT0014616 Taeniopygia guttata miR-205
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 1 cccttc 6
>rlcv-miR-rL1-20-5p MIMAT0014065 Rhesus lymphocryptovirus
miR-rL1-20-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accctt 6
||||||
Sbjct: 8 accctt 3
>sbi-miR528 MIMAT0014048 Sorghum bicolor miR528
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>zma-miR528b-5p MIMAT0014029 Zea mays miR528b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>zma-miR528a-5p MIMAT0014028 Zea mays miR528a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>bmo-miR-2780b MIMAT0013732 Bombyx mori miR-2780b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accctt 6
||||||
Sbjct: 6 accctt 1
>bmo-miR-2780a-5p MIMAT0013669 Bombyx mori miR-2780a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accctt 6
||||||
Sbjct: 6 accctt 1
>aqc-miR395a MIMAT0012575 Aquilegia caerulea miR395a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>aqc-miR395b MIMAT0012574 Aquilegia caerulea miR395b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>mtr-miR2598 MIMAT0013301 Medicago truncatula miR2598
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accctt 6
||||||
Sbjct: 8 accctt 3
>aqu-miR-2020-3p MIMAT0009699 Amphimedon queenslandica
miR-2020-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>osa-miR528-5p MIMAT0002884 Oryza sativa miR528-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>ptc-miR395a MIMAT0002021 Populus trichocarpa miR395a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccttc 7
||||||
Sbjct: 8 cccttc 3
>gga-miR-205b MIMAT0001164 Gallus gallus miR-205b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccttc 7
||||||
Sbjct: 1 cccttc 6
>rno-miR-336-5p MIMAT0000576 Rattus norvegicus miR-336-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accctt 6
||||||
Sbjct: 3 accctt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 71
Number of extensions: 68
Number of successful extensions: 58
Number of sequences better than 100.0: 58
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 58
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
