BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-us25-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D17-3p MIMAT0028191 Duck enteritis miR-D17-3p 14 20
hcmv-miR-US25-1-5p MIMAT0001581 Human cytomegalovirus miR-US25-1-5p 14 20
ppc-miR-8310-5p MIMAT0033150 Pristionchus pacificus miR-8310-5p 12 80
ppc-miR-63k-5p MIMAT0033018 Pristionchus pacificus miR-63k-5p 12 80
ppc-miR-8219-5p MIMAT0032870 Pristionchus pacificus miR-8219-5p 12 80
ppc-miR-63i-5p MIMAT0032868 Pristionchus pacificus miR-63i-5p 12 80
cel-miR-2217b-1-5p MIMAT0032839 Caenorhabditis elegans miR-2217b... 12 80
bta-miR-7860 MIMAT0030439 Bos taurus miR-7860 12 80
bma-miR-5869 MIMAT0026368 Brugia malayi miR-5869 12 80
mdm-miR7123b MIMAT0026051 Malus domestica miR7123b 12 80
mdm-miR7123a MIMAT0026050 Malus domestica miR7123a 12 80
hsa-miR-6812-3p MIMAT0027525 Homo sapiens miR-6812-3p 12 80
hsa-miR-6743-3p MIMAT0027388 Homo sapiens miR-6743-3p 12 80
gma-miR4993 MIMAT0021011 Glycine max miR4993 12 80
hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p 12 80
tca-miR-3848-5p MIMAT0018744 Tribolium castaneum miR-3848-5p 12 80
hsa-miR-4321 MIMAT0016874 Homo sapiens miR-4321 12 80
cbr-miR-2225-5p MIMAT0011497 Caenorhabditis briggsae miR-2225-5p 12 80
ptr-miR-572 MIMAT0008248 Pan troglodytes miR-572 12 80
mmu-miR-1901 MIMAT0007880 Mus musculus miR-1901 12 80
mml-miR-572 MIMAT0006434 Macaca mulatta miR-572 12 80
hsa-miR-572 MIMAT0003237 Homo sapiens miR-572 12 80
hcmv-miR-US25-2-5p MIMAT0001582 Human cytomegalovirus miR-US25-2-5p 12 80
>dev-miR-D17-3p MIMAT0028191 Duck enteritis miR-D17-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 accgctc 7
|||||||
Sbjct: 2 accgctc 8
>hcmv-miR-US25-1-5p MIMAT0001581 Human cytomegalovirus
miR-US25-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 accgctc 7
|||||||
Sbjct: 2 accgctc 8
>ppc-miR-8310-5p MIMAT0033150 Pristionchus pacificus miR-8310-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgctc 7
||||||
Sbjct: 6 ccgctc 1
>ppc-miR-63k-5p MIMAT0033018 Pristionchus pacificus miR-63k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgctc 7
||||||
Sbjct: 1 ccgctc 6
>ppc-miR-8219-5p MIMAT0032870 Pristionchus pacificus miR-8219-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accgct 6
||||||
Sbjct: 1 accgct 6
>ppc-miR-63i-5p MIMAT0032868 Pristionchus pacificus miR-63i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgctc 7
||||||
Sbjct: 1 ccgctc 6
>cel-miR-2217b-1-5p MIMAT0032839 Caenorhabditis elegans
miR-2217b-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgctc 7
||||||
Sbjct: 8 ccgctc 3
>bta-miR-7860 MIMAT0030439 Bos taurus miR-7860
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgctc 7
||||||
Sbjct: 8 ccgctc 3
>bma-miR-5869 MIMAT0026368 Brugia malayi miR-5869
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgctc 7
||||||
Sbjct: 3 ccgctc 8
>mdm-miR7123b MIMAT0026051 Malus domestica miR7123b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgctc 7
||||||
Sbjct: 8 ccgctc 3
>mdm-miR7123a MIMAT0026050 Malus domestica miR7123a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgctc 7
||||||
Sbjct: 8 ccgctc 3
>hsa-miR-6812-3p MIMAT0027525 Homo sapiens miR-6812-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgctc 7
||||||
Sbjct: 1 ccgctc 6
>hsa-miR-6743-3p MIMAT0027388 Homo sapiens miR-6743-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgctc 7
||||||
Sbjct: 3 ccgctc 8
>gma-miR4993 MIMAT0021011 Glycine max miR4993
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgctc 7
||||||
Sbjct: 6 ccgctc 1
>hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgct 6
||||||
Sbjct: 6 accgct 1
>tca-miR-3848-5p MIMAT0018744 Tribolium castaneum miR-3848-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgct 6
||||||
Sbjct: 8 accgct 3
>hsa-miR-4321 MIMAT0016874 Homo sapiens miR-4321
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgct 6
||||||
Sbjct: 8 accgct 3
>cbr-miR-2225-5p MIMAT0011497 Caenorhabditis briggsae
miR-2225-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accgct 6
||||||
Sbjct: 1 accgct 6
>ptr-miR-572 MIMAT0008248 Pan troglodytes miR-572
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgctc 7
||||||
Sbjct: 3 ccgctc 8
>mmu-miR-1901 MIMAT0007880 Mus musculus miR-1901
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgctc 7
||||||
Sbjct: 1 ccgctc 6
>mml-miR-572 MIMAT0006434 Macaca mulatta miR-572
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgctc 7
||||||
Sbjct: 3 ccgctc 8
>hsa-miR-572 MIMAT0003237 Homo sapiens miR-572
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgctc 7
||||||
Sbjct: 3 ccgctc 8
>hcmv-miR-US25-2-5p MIMAT0001582 Human cytomegalovirus
miR-US25-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgct 6
||||||
Sbjct: 6 accgct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 34
Number of extensions: 32
Number of successful extensions: 23
Number of sequences better than 100.0: 23
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 23
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
