BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m5*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ame-miR-3720 MIMAT0018538 Apis mellifera miR-3720 14 20
dps-miR-2563-3p MIMAT0012389 Drosophila pseudoobscura miR-2563-3p 14 20
dme-miR-960-3p MIMAT0020855 Drosophila melanogaster miR-960-3p 14 20
mdv1-miR-M5-5p MIMAT0005802 Mareks disease miR-M5-5p 14 20
chi-let-7e-3p MIMAT0035889 Capra hircus let-7e-3p 12 80
ppc-miR-83-5p MIMAT0032886 Pristionchus pacificus miR-83-5p 12 80
prd-miR-7905-5p MIMAT0030622 Panagrellus redivivus miR-7905-5p 12 80
hhi-miR-7793 MIMAT0030338 Hippoglossus hippoglossus miR-7793 12 80
mmu-miR-6973a-5p MIMAT0027848 Mus musculus miR-6973a-5p 12 80
mmu-miR-6416-5p MIMAT0025170 Mus musculus miR-6416-5p 12 80
aca-miR-5438 MIMAT0022060 Anolis carolinensis miR-5438 12 80
ath-miR5024-3p MIMAT0021048 Arabidopsis thaliana miR5024-3p 12 80
oar-miR-433-5p MIMAT0019241 Ovis aries miR-433-5p 12 80
esi-miR3467-3p MIMAT0017774 Ectocarpus siliculosus miR3467-3p 12 80
bmo-miR-3340 MIMAT0015528 Bombyx mori miR-3340 12 80
api-miR-3028 MIMAT0014764 Acyrthosiphon pisum miR-3028 12 80
cbr-miR-2226-3p MIMAT0011500 Caenorhabditis briggsae miR-2226-3p 12 80
mml-miR-433-5p MIMAT0026875 Macaca mulatta miR-433-5p 12 80
mml-let-7e-3p MIMAT0026792 Macaca mulatta let-7e-3p 12 80
rrv-miR-rR1-2 MIMAT0004408 Rhesus monkey miR-rR1-2 12 80
rlcv-miR-rL1-11-5p MIMAT0019089 Rhesus lymphocryptovirus miR-rL1... 12 80
ebv-miR-BART8-5p MIMAT0003417 Epstein Barr miR-BART8-5p 12 80
rno-miR-433-5p MIMAT0017192 Rattus norvegicus miR-433-5p 12 80
hsa-miR-433-5p MIMAT0026554 Homo sapiens miR-433-5p 12 80
mmu-miR-433-5p MIMAT0001419 Mus musculus miR-433-5p 12 80
cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360 12 80
rno-let-7e-3p MIMAT0004706 Rattus norvegicus let-7e-3p 12 80
cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p 12 80
mmu-let-7e-3p MIMAT0017016 Mus musculus let-7e-3p 12 80
hsa-let-7e-3p MIMAT0004485 Homo sapiens let-7e-3p 12 80
>ame-miR-3720 MIMAT0018538 Apis mellifera miR-3720
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accgtat 7
|||||||
Sbjct: 7 accgtat 1
>dps-miR-2563-3p MIMAT0012389 Drosophila pseudoobscura
miR-2563-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accgtat 7
|||||||
Sbjct: 8 accgtat 2
>dme-miR-960-3p MIMAT0020855 Drosophila melanogaster miR-960-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 accgtat 7
|||||||
Sbjct: 8 accgtat 2
>mdv1-miR-M5-5p MIMAT0005802 Mareks disease miR-M5-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 accgtat 7
|||||||
Sbjct: 2 accgtat 8
>chi-let-7e-3p MIMAT0035889 Capra hircus let-7e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgtat 7
||||||
Sbjct: 8 ccgtat 3
>ppc-miR-83-5p MIMAT0032886 Pristionchus pacificus miR-83-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgtat 7
||||||
Sbjct: 2 ccgtat 7
>prd-miR-7905-5p MIMAT0030622 Panagrellus redivivus miR-7905-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accgta 6
||||||
Sbjct: 1 accgta 6
>hhi-miR-7793 MIMAT0030338 Hippoglossus hippoglossus miR-7793
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 8 accgta 3
>mmu-miR-6973a-5p MIMAT0027848 Mus musculus miR-6973a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 6 accgta 1
>mmu-miR-6416-5p MIMAT0025170 Mus musculus miR-6416-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgtat 7
||||||
Sbjct: 3 ccgtat 8
>aca-miR-5438 MIMAT0022060 Anolis carolinensis miR-5438
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgtat 7
||||||
Sbjct: 7 ccgtat 2
>ath-miR5024-3p MIMAT0021048 Arabidopsis thaliana miR5024-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgtat 7
||||||
Sbjct: 1 ccgtat 6
>oar-miR-433-5p MIMAT0019241 Ovis aries miR-433-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 6 accgta 1
>esi-miR3467-3p MIMAT0017774 Ectocarpus siliculosus miR3467-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 6 accgta 1
>bmo-miR-3340 MIMAT0015528 Bombyx mori miR-3340
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgtat 7
||||||
Sbjct: 7 ccgtat 2
>api-miR-3028 MIMAT0014764 Acyrthosiphon pisum miR-3028
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 6 accgta 1
>cbr-miR-2226-3p MIMAT0011500 Caenorhabditis briggsae
miR-2226-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 8 accgta 3
>mml-miR-433-5p MIMAT0026875 Macaca mulatta miR-433-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 6 accgta 1
>mml-let-7e-3p MIMAT0026792 Macaca mulatta let-7e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgtat 7
||||||
Sbjct: 8 ccgtat 3
>rrv-miR-rR1-2 MIMAT0004408 Rhesus monkey miR-rR1-2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgtat 7
||||||
Sbjct: 6 ccgtat 1
>rlcv-miR-rL1-11-5p MIMAT0019089 Rhesus lymphocryptovirus
miR-rL1-11-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgtat 7
||||||
Sbjct: 1 ccgtat 6
>ebv-miR-BART8-5p MIMAT0003417 Epstein Barr miR-BART8-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 6 accgta 1
>rno-miR-433-5p MIMAT0017192 Rattus norvegicus miR-433-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 6 accgta 1
>hsa-miR-433-5p MIMAT0026554 Homo sapiens miR-433-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 6 accgta 1
>mmu-miR-433-5p MIMAT0001419 Mus musculus miR-433-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 accgta 6
||||||
Sbjct: 6 accgta 1
>cbr-miR-360 MIMAT0001303 Caenorhabditis briggsae miR-360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accgta 6
||||||
Sbjct: 3 accgta 8
>rno-let-7e-3p MIMAT0004706 Rattus norvegicus let-7e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgtat 7
||||||
Sbjct: 8 ccgtat 3
>cel-miR-360-3p MIMAT0000702 Caenorhabditis elegans miR-360-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 accgta 6
||||||
Sbjct: 3 accgta 8
>mmu-let-7e-3p MIMAT0017016 Mus musculus let-7e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgtat 7
||||||
Sbjct: 8 ccgtat 3
>hsa-let-7e-3p MIMAT0004485 Homo sapiens let-7e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgtat 7
||||||
Sbjct: 8 ccgtat 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 40
Number of extensions: 36
Number of successful extensions: 30
Number of sequences better than 100.0: 30
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 30
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
