BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-4-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-4-5p MIMAT0003430 Rhesus lymphocryptovirus miR-rL1-... 16 6.9
ppc-miR-8313-3p MIMAT0033157 Pristionchus pacificus miR-8313-3p 14 27
prd-miR-7936-5p MIMAT0030730 Panagrellus redivivus miR-7936-5p 14 27
osa-miR7694-5p MIMAT0029959 Oryza sativa miR7694-5p 14 27
cgr-miR-325-5p MIMAT0023911 Cricetulus griseus miR-325-5p 14 27
pma-miR-4612 MIMAT0019646 Petromyzon marinus miR-4612 14 27
ppy-miR-325 MIMAT0015829 Pongo pygmaeus miR-325 14 27
cfa-miR-325 MIMAT0009897 Canis familiaris miR-325 14 27
osa-miR1862d MIMAT0007830 Oryza sativa miR1862d 14 27
mml-miR-325 MIMAT0006268 Macaca mulatta miR-325 14 27
gga-miR-1714 MIMAT0007610 Gallus gallus miR-1714 14 27
ppt-miR1047-5p MIMAT0005161 Physcomitrella patens miR1047-5p 14 27
rlcv-miR-rL1-5-5p MIMAT0003432 Rhesus lymphocryptovirus miR-rL1-... 14 27
ebv-miR-BART3-5p MIMAT0003410 Epstein Barr miR-BART3-5p 14 27
ssc-miR-325 MIMAT0002150 Sus scrofa miR-325 14 27
hsa-miR-325 MIMAT0000771 Homo sapiens miR-325 14 27
mmu-miR-325-5p MIMAT0000558 Mus musculus miR-325-5p 14 27
rno-miR-325-5p MIMAT0000557 Rattus norvegicus miR-325-5p 14 27
>rlcv-miR-rL1-4-5p MIMAT0003430 Rhesus lymphocryptovirus
miR-rL1-4-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 acctagta 8
||||||||
Sbjct: 1 acctagta 8
>ppc-miR-8313-3p MIMAT0033157 Pristionchus pacificus miR-8313-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 2 cctagta 8
>prd-miR-7936-5p MIMAT0030730 Panagrellus redivivus miR-7936-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctagta 8
|||||||
Sbjct: 8 cctagta 2
>osa-miR7694-5p MIMAT0029959 Oryza sativa miR7694-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acctagt 7
|||||||
Sbjct: 2 acctagt 8
>cgr-miR-325-5p MIMAT0023911 Cricetulus griseus miR-325-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 1 cctagta 7
>pma-miR-4612 MIMAT0019646 Petromyzon marinus miR-4612
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 2 cctagta 8
>ppy-miR-325 MIMAT0015829 Pongo pygmaeus miR-325
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 1 cctagta 7
>cfa-miR-325 MIMAT0009897 Canis familiaris miR-325
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 1 cctagta 7
>osa-miR1862d MIMAT0007830 Oryza sativa miR1862d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acctagt 7
|||||||
Sbjct: 7 acctagt 1
>mml-miR-325 MIMAT0006268 Macaca mulatta miR-325
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 1 cctagta 7
>gga-miR-1714 MIMAT0007610 Gallus gallus miR-1714
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 1 cctagta 7
>ppt-miR1047-5p MIMAT0005161 Physcomitrella patens miR1047-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acctagt 7
|||||||
Sbjct: 7 acctagt 1
>rlcv-miR-rL1-5-5p MIMAT0003432 Rhesus lymphocryptovirus
miR-rL1-5-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acctagt 7
|||||||
Sbjct: 2 acctagt 8
>ebv-miR-BART3-5p MIMAT0003410 Epstein Barr miR-BART3-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acctagt 7
|||||||
Sbjct: 1 acctagt 7
>ssc-miR-325 MIMAT0002150 Sus scrofa miR-325
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 1 cctagta 7
>hsa-miR-325 MIMAT0000771 Homo sapiens miR-325
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 1 cctagta 7
>mmu-miR-325-5p MIMAT0000558 Mus musculus miR-325-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 1 cctagta 7
>rno-miR-325-5p MIMAT0000557 Rattus norvegicus miR-325-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctagta 8
|||||||
Sbjct: 1 cctagta 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 82
Number of extensions: 63
Number of successful extensions: 48
Number of sequences better than 100.0: 18
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)