BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8239-5p MIMAT0032934 Pristionchus pacificus miR-8239-5p 14 20
vvi-miR3640-5p MIMAT0018053 Vitis vinifera miR3640-5p 14 20
ebv-miR-BART4-5p MIMAT0003412 Epstein Barr miR-BART4-5p 14 20
ata-miR2118d-3p MIMAT0037258 Aegilops tauschii miR2118d-3p 12 80
ata-miR2118c-3p MIMAT0037114 Aegilops tauschii miR2118c-3p 12 80
ssc-miR-9838-5p MIMAT0037056 Sus scrofa miR-9838-5p 12 80
rno-miR-5132-3p MIMAT0035751 Rattus norvegicus miR-5132-3p 12 80
bdi-miR2118b MIMAT0035532 Brachypodium distachyon miR2118b 12 80
ssa-miR-8163-3p MIMAT0032758 Salmo salar miR-8163-3p 12 80
prd-miR-252-3p MIMAT0030525 Panagrellus redivivus miR-252-3p 12 80
mmu-miR-465d-3p MIMAT0029881 Mus musculus miR-465d-3p 12 80
mdo-miR-7353-3p MIMAT0028719 Monodelphis domestica miR-7353-3p 12 80
sbi-miR2118-3p MIMAT0026427 Sorghum bicolor miR2118-3p 12 80
mmu-miR-6912-3p MIMAT0027725 Mus musculus miR-6912-3p 12 80
gga-miR-6673-3p MIMAT0025775 Gallus gallus miR-6673-3p 12 80
mmu-miR-6537-3p MIMAT0025582 Mus musculus miR-6537-3p 12 80
hme-miR-306 MIMAT0024975 Heliconius melpomene miR-306 12 80
bta-miR-2285g MIMAT0024582 Bos taurus miR-2285g 12 80
bta-miR-2285e MIMAT0024580 Bos taurus miR-2285e 12 80
mse-miR-306 MIMAT0024486 Manduca sexta miR-306 12 80
mse-miR-275 MIMAT0024430 Manduca sexta miR-275 12 80
ppy-miR-3934 MIMAT0024375 Pongo pygmaeus miR-3934 12 80
ggo-miR-3127 MIMAT0024269 Gorilla gorilla miR-3127 12 80
ptr-miR-3127 MIMAT0024038 Pan troglodytes miR-3127 12 80
hco-miR-5887 MIMAT0023321 Haemonchus contortus miR-5887 12 80
osa-miR5829 MIMAT0023303 Oryza sativa miR5829 12 80
hsa-miR-4772-5p MIMAT0019926 Homo sapiens miR-4772-5p 12 80
nlo-miR-275 MIMAT0018429 Nasonia longicornis miR-275 12 80
ngi-miR-275 MIMAT0018386 Nasonia giraulti miR-275 12 80
hsa-miR-3934-5p MIMAT0018349 Homo sapiens miR-3934-5p 12 80
ame-miR-306 MIMAT0018579 Apis mellifera miR-306 12 80
hsa-miR-3622b-3p MIMAT0018006 Homo sapiens miR-3622b-3p 12 80
hsa-miR-3622a-3p MIMAT0018004 Homo sapiens miR-3622a-3p 12 80
nvi-miR-275 MIMAT0015685 Nasonia vitripennis miR-275 12 80
bmo-miR-3216 MIMAT0015396 Bombyx mori miR-3216 12 80
hsa-miR-3151-3p MIMAT0027026 Homo sapiens miR-3151-3p 12 80
hsa-miR-3140-5p MIMAT0019204 Homo sapiens miR-3140-5p 12 80
hsa-miR-544b MIMAT0015004 Homo sapiens miR-544b 12 80
hsa-miR-3127-5p MIMAT0014990 Homo sapiens miR-3127-5p 12 80
api-miR-306 MIMAT0014776 Acyrthosiphon pisum miR-306 12 80
api-miR-275 MIMAT0014721 Acyrthosiphon pisum miR-275 12 80
tgu-miR-2972 MIMAT0014482 Taeniopygia guttata miR-2972 12 80
cqu-miR-306 MIMAT0014438 Culex quinquefasciatus miR-306 12 80
cqu-miR-275 MIMAT0014364 Culex quinquefasciatus miR-275 12 80
aae-miR-306-5p MIMAT0014229 Aedes aegypti miR-306-5p 12 80
aae-miR-275-3p MIMAT0014209 Aedes aegypti miR-275-3p 12 80
isc-miR-275 MIMAT0012693 Ixodes scapularis miR-275 12 80
dpu-miR-275 MIMAT0012651 Daphnia pulex miR-275 12 80
bmo-miR-306a-5p MIMAT0012629 Bombyx mori miR-306a-5p 12 80
cte-miR-2702-3p MIMAT0013566 Capitella teleta miR-2702-3p 12 80
mtr-miR2615c MIMAT0013331 Medicago truncatula miR2615c 12 80
mtr-miR2615b MIMAT0013330 Medicago truncatula miR2615b 12 80
mtr-miR2615a MIMAT0013329 Medicago truncatula miR2615a 12 80
bta-miR-2285c MIMAT0011950 Bos taurus miR-2285c 12 80
bta-miR-2323 MIMAT0011852 Bos taurus miR-2323 12 80
bta-miR-2285d MIMAT0011815 Bos taurus miR-2285d 12 80
zma-miR2118g MIMAT0011766 Zea mays miR2118g 12 80
zma-miR2118e MIMAT0011764 Zea mays miR2118e 12 80
zma-miR2118d MIMAT0011763 Zea mays miR2118d 12 80
zma-miR2118a MIMAT0011760 Zea mays miR2118a 12 80
osa-miR2118o MIMAT0011754 Oryza sativa miR2118o 12 80
osa-miR2118m MIMAT0011752 Oryza sativa miR2118m 12 80
osa-miR2118k MIMAT0011750 Oryza sativa miR2118k 12 80
osa-miR2118j MIMAT0011749 Oryza sativa miR2118j 12 80
osa-miR2118h MIMAT0011747 Oryza sativa miR2118h 12 80
osa-miR2118f MIMAT0011745 Oryza sativa miR2118f 12 80
osa-miR2118d MIMAT0011743 Oryza sativa miR2118d 12 80
cel-miR-2211-3p MIMAT0011438 Caenorhabditis elegans miR-2211-3p 12 80
nve-miR-2048-3p MIMAT0009821 Nematostella vectensis miR-2048-3p 12 80
nve-miR-2040b-5p MIMAT0009808 Nematostella vectensis miR-2040b-5p 12 80
nve-miR-2038-5p MIMAT0009798 Nematostella vectensis miR-2038-5p 12 80
sko-miR-29b-5p MIMAT0019154 Saccoglossus kowalevskii miR-29b-5p 12 80
dya-miR-275 MIMAT0009115 Drosophila yakuba miR-275 12 80
dya-miR-306-5p MIMAT0009068 Drosophila yakuba miR-306-5p 12 80
dwi-miR-275 MIMAT0009045 Drosophila willistoni miR-275 12 80
dwi-miR-306 MIMAT0008986 Drosophila willistoni miR-306 12 80
dvi-miR-275-3p MIMAT0008970 Drosophila virilis miR-275-3p 12 80
dvi-miR-306-5p MIMAT0008913 Drosophila virilis miR-306-5p 12 80
dsi-miR-275 MIMAT0008880 Drosophila simulans miR-275 12 80
dse-miR-275 MIMAT0008820 Drosophila sechellia miR-275 12 80
dse-miR-306-5p MIMAT0008804 Drosophila sechellia miR-306-5p 12 80
dpe-miR-306 MIMAT0008759 Drosophila persimilis miR-306 12 80
dpe-miR-275 MIMAT0008744 Drosophila persimilis miR-275 12 80
dmo-miR-275 MIMAT0008664 Drosophila mojavensis miR-275 12 80
dmo-miR-306-5p MIMAT0008648 Drosophila mojavensis miR-306-5p 12 80
dgr-miR-275 MIMAT0008625 Drosophila grimshawi miR-275 12 80
dgr-miR-306 MIMAT0008592 Drosophila grimshawi miR-306 12 80
der-miR-275 MIMAT0008503 Drosophila erecta miR-275 12 80
der-miR-306-5p MIMAT0008494 Drosophila erecta miR-306-5p 12 80
dan-miR-275 MIMAT0008451 Drosophila ananassae miR-275 12 80
dan-miR-306 MIMAT0008450 Drosophila ananassae miR-306 12 80
tca-miR-275-3p MIMAT0008379 Tribolium castaneum miR-275-3p 12 80
gga-miR-1572 MIMAT0007432 Gallus gallus miR-1572 12 80
osa-miR1432-5p MIMAT0005966 Oryza sativa miR1432-5p 12 80
aga-miR-306 MIMAT0005530 Anopheles gambiae miR-306 12 80
pta-miR950b MIMAT0005011 Pinus taeda miR950b 12 80
pta-miR950a MIMAT0005010 Pinus taeda miR950a 12 80
ame-miR-275 MIMAT0004424 Apis mellifera miR-275 12 80
ath-miR864-5p MIMAT0004311 Arabidopsis thaliana miR864-5p 12 80
bmo-miR-275-3p MIMAT0004201 Bombyx mori miR-275-3p 12 80
rlcv-miR-rL1-1-5p MIMAT0003427 Rhesus lymphocryptovirus miR-rL1-... 12 80
aga-miR-275 MIMAT0001508 Anopheles gambiae miR-275 12 80
dps-miR-306 MIMAT0001256 Drosophila pseudoobscura miR-306 12 80
dps-miR-275 MIMAT0001238 Drosophila pseudoobscura miR-275 12 80
ebv-miR-BHRF1-1 MIMAT0000995 Epstein Barr miR-BHRF1-1 12 80
dme-miR-306-5p MIMAT0000393 Drosophila melanogaster miR-306-5p 12 80
dme-miR-275-3p MIMAT0000333 Drosophila melanogaster miR-275-3p 12 80
cel-miR-87-5p MIMAT0020325 Caenorhabditis elegans miR-87-5p 12 80
>ppc-miR-8239-5p MIMAT0032934 Pristionchus pacificus miR-8239-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acctgat 7
|||||||
Sbjct: 2 acctgat 8
>vvi-miR3640-5p MIMAT0018053 Vitis vinifera miR3640-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acctgat 7
|||||||
Sbjct: 1 acctgat 7
>ebv-miR-BART4-5p MIMAT0003412 Epstein Barr miR-BART4-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acctgat 7
|||||||
Sbjct: 2 acctgat 8
>ata-miR2118d-3p MIMAT0037258 Aegilops tauschii miR2118d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>ata-miR2118c-3p MIMAT0037114 Aegilops tauschii miR2118c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>ssc-miR-9838-5p MIMAT0037056 Sus scrofa miR-9838-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>rno-miR-5132-3p MIMAT0035751 Rattus norvegicus miR-5132-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 1 cctgat 6
>bdi-miR2118b MIMAT0035532 Brachypodium distachyon miR2118b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>ssa-miR-8163-3p MIMAT0032758 Salmo salar miR-8163-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>prd-miR-252-3p MIMAT0030525 Panagrellus redivivus miR-252-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 1 cctgat 6
>mmu-miR-465d-3p MIMAT0029881 Mus musculus miR-465d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgat 7
||||||
Sbjct: 8 cctgat 3
>mdo-miR-7353-3p MIMAT0028719 Monodelphis domestica miR-7353-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgat 7
||||||
Sbjct: 8 cctgat 3
>sbi-miR2118-3p MIMAT0026427 Sorghum bicolor miR2118-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>mmu-miR-6912-3p MIMAT0027725 Mus musculus miR-6912-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>gga-miR-6673-3p MIMAT0025775 Gallus gallus miR-6673-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 1 acctga 6
>mmu-miR-6537-3p MIMAT0025582 Mus musculus miR-6537-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgat 7
||||||
Sbjct: 8 cctgat 3
>hme-miR-306 MIMAT0024975 Heliconius melpomene miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>bta-miR-2285g MIMAT0024582 Bos taurus miR-2285g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>bta-miR-2285e MIMAT0024580 Bos taurus miR-2285e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>mse-miR-306 MIMAT0024486 Manduca sexta miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>mse-miR-275 MIMAT0024430 Manduca sexta miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>ppy-miR-3934 MIMAT0024375 Pongo pygmaeus miR-3934
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>ggo-miR-3127 MIMAT0024269 Gorilla gorilla miR-3127
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgat 7
||||||
Sbjct: 6 cctgat 1
>ptr-miR-3127 MIMAT0024038 Pan troglodytes miR-3127
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgat 7
||||||
Sbjct: 6 cctgat 1
>hco-miR-5887 MIMAT0023321 Haemonchus contortus miR-5887
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>osa-miR5829 MIMAT0023303 Oryza sativa miR5829
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgat 7
||||||
Sbjct: 6 cctgat 1
>hsa-miR-4772-5p MIMAT0019926 Homo sapiens miR-4772-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgat 7
||||||
Sbjct: 8 cctgat 3
>nlo-miR-275 MIMAT0018429 Nasonia longicornis miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>ngi-miR-275 MIMAT0018386 Nasonia giraulti miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>hsa-miR-3934-5p MIMAT0018349 Homo sapiens miR-3934-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>ame-miR-306 MIMAT0018579 Apis mellifera miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>hsa-miR-3622b-3p MIMAT0018006 Homo sapiens miR-3622b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>hsa-miR-3622a-3p MIMAT0018004 Homo sapiens miR-3622a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>nvi-miR-275 MIMAT0015685 Nasonia vitripennis miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>bmo-miR-3216 MIMAT0015396 Bombyx mori miR-3216
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgat 7
||||||
Sbjct: 7 cctgat 2
>hsa-miR-3151-3p MIMAT0027026 Homo sapiens miR-3151-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 1 cctgat 6
>hsa-miR-3140-5p MIMAT0019204 Homo sapiens miR-3140-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 1 acctga 6
>hsa-miR-544b MIMAT0015004 Homo sapiens miR-544b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 1 acctga 6
>hsa-miR-3127-5p MIMAT0014990 Homo sapiens miR-3127-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgat 7
||||||
Sbjct: 6 cctgat 1
>api-miR-306 MIMAT0014776 Acyrthosiphon pisum miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>api-miR-275 MIMAT0014721 Acyrthosiphon pisum miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>tgu-miR-2972 MIMAT0014482 Taeniopygia guttata miR-2972
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>cqu-miR-306 MIMAT0014438 Culex quinquefasciatus miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>cqu-miR-275 MIMAT0014364 Culex quinquefasciatus miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>aae-miR-306-5p MIMAT0014229 Aedes aegypti miR-306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>aae-miR-275-3p MIMAT0014209 Aedes aegypti miR-275-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>isc-miR-275 MIMAT0012693 Ixodes scapularis miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dpu-miR-275 MIMAT0012651 Daphnia pulex miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>bmo-miR-306a-5p MIMAT0012629 Bombyx mori miR-306a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>cte-miR-2702-3p MIMAT0013566 Capitella teleta miR-2702-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 8 acctga 3
>mtr-miR2615c MIMAT0013331 Medicago truncatula miR2615c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 1 cctgat 6
>mtr-miR2615b MIMAT0013330 Medicago truncatula miR2615b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 1 cctgat 6
>mtr-miR2615a MIMAT0013329 Medicago truncatula miR2615a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 1 cctgat 6
>bta-miR-2285c MIMAT0011950 Bos taurus miR-2285c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>bta-miR-2323 MIMAT0011852 Bos taurus miR-2323
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>bta-miR-2285d MIMAT0011815 Bos taurus miR-2285d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>zma-miR2118g MIMAT0011766 Zea mays miR2118g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>zma-miR2118e MIMAT0011764 Zea mays miR2118e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>zma-miR2118d MIMAT0011763 Zea mays miR2118d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>zma-miR2118a MIMAT0011760 Zea mays miR2118a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>osa-miR2118o MIMAT0011754 Oryza sativa miR2118o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>osa-miR2118m MIMAT0011752 Oryza sativa miR2118m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>osa-miR2118k MIMAT0011750 Oryza sativa miR2118k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>osa-miR2118j MIMAT0011749 Oryza sativa miR2118j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>osa-miR2118h MIMAT0011747 Oryza sativa miR2118h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>osa-miR2118f MIMAT0011745 Oryza sativa miR2118f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>osa-miR2118d MIMAT0011743 Oryza sativa miR2118d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>cel-miR-2211-3p MIMAT0011438 Caenorhabditis elegans miR-2211-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>nve-miR-2048-3p MIMAT0009821 Nematostella vectensis miR-2048-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>nve-miR-2040b-5p MIMAT0009808 Nematostella vectensis
miR-2040b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>nve-miR-2038-5p MIMAT0009798 Nematostella vectensis miR-2038-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
>sko-miR-29b-5p MIMAT0019154 Saccoglossus kowalevskii miR-29b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 1 cctgat 6
>dya-miR-275 MIMAT0009115 Drosophila yakuba miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dya-miR-306-5p MIMAT0009068 Drosophila yakuba miR-306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dwi-miR-275 MIMAT0009045 Drosophila willistoni miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dwi-miR-306 MIMAT0008986 Drosophila willistoni miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dvi-miR-275-3p MIMAT0008970 Drosophila virilis miR-275-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dvi-miR-306-5p MIMAT0008913 Drosophila virilis miR-306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dsi-miR-275 MIMAT0008880 Drosophila simulans miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dse-miR-275 MIMAT0008820 Drosophila sechellia miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dse-miR-306-5p MIMAT0008804 Drosophila sechellia miR-306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dpe-miR-306 MIMAT0008759 Drosophila persimilis miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dpe-miR-275 MIMAT0008744 Drosophila persimilis miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dmo-miR-275 MIMAT0008664 Drosophila mojavensis miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dmo-miR-306-5p MIMAT0008648 Drosophila mojavensis miR-306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dgr-miR-275 MIMAT0008625 Drosophila grimshawi miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dgr-miR-306 MIMAT0008592 Drosophila grimshawi miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>der-miR-275 MIMAT0008503 Drosophila erecta miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>der-miR-306-5p MIMAT0008494 Drosophila erecta miR-306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dan-miR-275 MIMAT0008451 Drosophila ananassae miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dan-miR-306 MIMAT0008450 Drosophila ananassae miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>tca-miR-275-3p MIMAT0008379 Tribolium castaneum miR-275-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>gga-miR-1572 MIMAT0007432 Gallus gallus miR-1572
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>osa-miR1432-5p MIMAT0005966 Oryza sativa miR1432-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgat 7
||||||
Sbjct: 6 cctgat 1
>aga-miR-306 MIMAT0005530 Anopheles gambiae miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>pta-miR950b MIMAT0005011 Pinus taeda miR950b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>pta-miR950a MIMAT0005010 Pinus taeda miR950a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>ame-miR-275 MIMAT0004424 Apis mellifera miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>ath-miR864-5p MIMAT0004311 Arabidopsis thaliana miR864-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>bmo-miR-275-3p MIMAT0004201 Bombyx mori miR-275-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>rlcv-miR-rL1-1-5p MIMAT0003427 Rhesus lymphocryptovirus
miR-rL1-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>aga-miR-275 MIMAT0001508 Anopheles gambiae miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dps-miR-306 MIMAT0001256 Drosophila pseudoobscura miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dps-miR-275 MIMAT0001238 Drosophila pseudoobscura miR-275
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>ebv-miR-BHRF1-1 MIMAT0000995 Epstein Barr miR-BHRF1-1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctga 6
||||||
Sbjct: 3 acctga 8
>dme-miR-306-5p MIMAT0000393 Drosophila melanogaster miR-306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>dme-miR-275-3p MIMAT0000333 Drosophila melanogaster miR-275-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctga 6
||||||
Sbjct: 6 acctga 1
>cel-miR-87-5p MIMAT0020325 Caenorhabditis elegans miR-87-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgat 7
||||||
Sbjct: 3 cctgat 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 125
Number of extensions: 122
Number of successful extensions: 108
Number of sequences better than 100.0: 108
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 108
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
