BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d12-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-7851-3p MIMAT0030426 Homo sapiens miR-7851-3p 14 20
dev-miR-D12-5p MIMAT0028184 Duck enteritis miR-D12-5p 14 20
hsa-miR-6742-3p MIMAT0027386 Homo sapiens miR-6742-3p 14 20
hsa-miR-4726-3p MIMAT0019846 Homo sapiens miR-4726-3p 14 20
mmu-miR-3090-3p MIMAT0014902 Mus musculus miR-3090-3p 14 20
ppt-miR900-5p MIMAT0004961 Physcomitrella patens miR900-5p 14 20
ssc-miR-9805-3p MIMAT0037023 Sus scrofa miR-9805-3p 12 80
ssc-miR-9804-5p MIMAT0037022 Sus scrofa miR-9804-5p 12 80
oha-miR-490-3p MIMAT0036937 Ophiophagus hannah miR-490-3p 12 80
oha-miR-221-5p MIMAT0036846 Ophiophagus hannah miR-221-5p 12 80
chi-miR-490 MIMAT0036250 Capra hircus miR-490 12 80
chi-miR-331-3p MIMAT0036146 Capra hircus miR-331-3p 12 80
chi-miR-221-5p MIMAT0036068 Capra hircus miR-221-5p 12 80
chi-miR-1343 MIMAT0035950 Capra hircus miR-1343 12 80
dvi-miR-190-3p MIMAT0035561 Drosophila virilis miR-190-3p 12 80
nve-miR-9454 MIMAT0035415 Nematostella vectensis miR-9454 12 80
efu-miR-221 MIMAT0035196 Eptesicus fuscus miR-221 12 80
efu-miR-9237a MIMAT0034853 Eptesicus fuscus miR-9237a 12 80
eca-miR-8931 MIMAT0034459 Equus caballus miR-8931 12 80
cfa-miR-8886 MIMAT0034390 Canis familiaris miR-8886 12 80
cfa-miR-1343 MIMAT0034357 Canis familiaris miR-1343 12 80
pxy-miR-306 MIMAT0033787 Plutella xylostella miR-306 12 80
ppc-miR-8342-3p MIMAT0033230 Pristionchus pacificus miR-8342-3p 12 80
cpa-miR8155 MIMAT0031853 Carica papaya miR8155 12 80
ppe-miR1511-3p MIMAT0031522 Prunus persica miR1511-3p 12 80
hsa-miR-8089 MIMAT0031016 Homo sapiens miR-8089 12 80
hsa-miR-8073 MIMAT0031000 Homo sapiens miR-8073 12 80
prd-miR-76-5p MIMAT0030818 Panagrellus redivivus miR-76-5p 12 80
prd-miR-87-5p MIMAT0030656 Panagrellus redivivus miR-87-5p 12 80
prd-miR-7880a-5p MIMAT0030518 Panagrellus redivivus miR-7880a-5p 12 80
mmu-miR-7665-3p MIMAT0029837 Mus musculus miR-7665-3p 12 80
gga-miR-7482-5p MIMAT0029118 Gallus gallus miR-7482-5p 12 80
mmu-miR-7032-5p MIMAT0027968 Mus musculus miR-7032-5p 12 80
mmu-miR-7005-5p MIMAT0027914 Mus musculus miR-7005-5p 12 80
mmu-miR-6990-5p MIMAT0027882 Mus musculus miR-6990-5p 12 80
hsa-miR-6791-5p MIMAT0027482 Homo sapiens miR-6791-5p 12 80
hsa-miR-6783-3p MIMAT0027467 Homo sapiens miR-6783-3p 12 80
hsa-miR-6765-3p MIMAT0027431 Homo sapiens miR-6765-3p 12 80
hsa-miR-6764-5p MIMAT0027428 Homo sapiens miR-6764-5p 12 80
pol-miR-221-5p MIMAT0025448 Paralichthys olivaceus miR-221-5p 12 80
ssc-miR-490 MIMAT0025376 Sus scrofa miR-490 12 80
hme-miR-6310-3p MIMAT0025017 Heliconius melpomene miR-6310-3p 12 80
hbr-miR6167 MIMAT0024785 Hevea brasiliensis miR6167 12 80
ppy-miR-3661 MIMAT0024388 Pongo pygmaeus miR-3661 12 80
ggo-miR-1343 MIMAT0024257 Gorilla gorilla miR-1343 12 80
ggo-miR-490 MIMAT0024205 Gorilla gorilla miR-490 12 80
cgr-miR-221-5p MIMAT0023858 Cricetulus griseus miR-221-5p 12 80
cgr-miR-1343 MIMAT0023761 Cricetulus griseus miR-1343 12 80
aca-miR-490-3p MIMAT0021977 Anolis carolinensis miR-490-3p 12 80
rgl-miR5139 MIMAT0020650 Rehmannia glutinosa miR5139 12 80
ssc-miR-1343 MIMAT0020596 Sus scrofa miR-1343 12 80
hsa-miR-1343-3p MIMAT0019776 Homo sapiens miR-1343-3p 12 80
hsa-miR-4685-5p MIMAT0019771 Homo sapiens miR-4685-5p 12 80
pma-miR-146-3p MIMAT0019479 Petromyzon marinus miR-146-3p 12 80
hsa-miR-3690 MIMAT0018119 Homo sapiens miR-3690 12 80
hsa-miR-3661 MIMAT0018082 Homo sapiens miR-3661 12 80
ssc-miR-484 MIMAT0017974 Sus scrofa miR-484 12 80
ssc-miR-490-3p MIMAT0022960 Sus scrofa miR-490-3p 12 80
hsa-miR-4292 MIMAT0016919 Homo sapiens miR-4292 12 80
rno-miR-3594-5p MIMAT0017898 Rattus norvegicus miR-3594-5p 12 80
ppy-miR-631 MIMAT0016070 Pongo pygmaeus miR-631 12 80
ppy-miR-490-3p MIMAT0015910 Pongo pygmaeus miR-490-3p 12 80
aly-miR869-3p MIMAT0017696 Arabidopsis lyrata miR869-3p 12 80
hsa-miR-3187-5p MIMAT0019216 Homo sapiens miR-3187-5p 12 80
tgu-miR-490-3p MIMAT0014548 Taeniopygia guttata miR-490-3p 12 80
tgu-miR-221-5p MIMAT0026976 Taeniopygia guttata miR-221-5p 12 80
ssc-miR-361-3p MIMAT0013934 Sus scrofa miR-361-3p 12 80
eca-miR-490-3p MIMAT0012945 Equus caballus miR-490-3p 12 80
rno-miR-490-3p MIMAT0012823 Rattus norvegicus miR-490-3p 12 80
ptr-miR-661 MIMAT0012814 Pan troglodytes miR-661 12 80
ptr-miR-631 MIMAT0012812 Pan troglodytes miR-631 12 80
dsi-miR-190-3p MIMAT0012450 Drosophila simulans miR-190-3p 12 80
dps-miR-190-3p MIMAT0012228 Drosophila pseudoobscura miR-190-3p 12 80
bta-miR-1343-3p MIMAT0011840 Bos taurus miR-1343-3p 12 80
ppc-miR-2240c MIMAT0011691 Pristionchus pacificus miR-2240c 12 80
ppc-miR-2240b MIMAT0011689 Pristionchus pacificus miR-2240b 12 80
crm-miR-246-5p MIMAT0011571 Caenorhabditis remanei miR-246-5p 12 80
cfa-miR-490 MIMAT0009875 Canis familiaris miR-490 12 80
bta-miR-631 MIMAT0009357 Bos taurus miR-631 12 80
bta-miR-490 MIMAT0009331 Bos taurus miR-490 12 80
tca-miR-190-3p MIMAT0019119 Tribolium castaneum miR-190-3p 12 80
ptr-miR-490 MIMAT0008165 Pan troglodytes miR-490 12 80
ssc-miR-221-5p MIMAT0022949 Sus scrofa miR-221-5p 12 80
mml-miR-661 MIMAT0006500 Macaca mulatta miR-661 12 80
mml-miR-631 MIMAT0006476 Macaca mulatta miR-631 12 80
mml-miR-490-3p MIMAT0006351 Macaca mulatta miR-490-3p 12 80
gga-miR-1635 MIMAT0007508 Gallus gallus miR-1635 12 80
oan-miR-221-5p MIMAT0007134 Ornithorhynchus anatinus miR-221-5p 12 80
oan-miR-1356 MIMAT0006953 Ornithorhynchus anatinus miR-1356 12 80
oan-miR-490-3p MIMAT0006811 Ornithorhynchus anatinus miR-490-3p 12 80
ptr-miR-510 MIMAT0005775 Pan troglodytes miR-510 12 80
cre-miR1157-5p MIMAT0005407 Chlamydomonas reinhardtii miR1157-5p 12 80
dme-miR-190-3p MIMAT0020848 Drosophila melanogaster miR-190-3p 12 80
mdo-miR-221-5p MIMAT0026701 Monodelphis domestica miR-221-5p 12 80
mmu-miR-490-3p MIMAT0003780 Mus musculus miR-490-3p 12 80
rlcv-miR-rL1-13-5p MIMAT0019090 Rhesus lymphocryptovirus miR-rL1... 12 80
gga-miR-490-3p MIMAT0003366 Gallus gallus miR-490-3p 12 80
hsa-miR-661 MIMAT0003324 Homo sapiens miR-661 12 80
hsa-miR-631 MIMAT0003300 Homo sapiens miR-631 12 80
rno-miR-361-3p MIMAT0017199 Rattus norvegicus miR-361-3p 12 80
hsa-miR-490-3p MIMAT0002806 Homo sapiens miR-490-3p 12 80
mml-miR-221-5p MIMAT0026590 Macaca mulatta miR-221-5p 12 80
dre-miR-221-5p MIMAT0031926 Danio rerio miR-221-5p 12 80
rno-miR-221-5p MIMAT0017163 Rattus norvegicus miR-221-5p 12 80
cel-miR-358-5p MIMAT0015120 Caenorhabditis elegans miR-358-5p 12 80
mmu-miR-221-5p MIMAT0017060 Mus musculus miR-221-5p 12 80
hsa-miR-221-5p MIMAT0004568 Homo sapiens miR-221-5p 12 80
cel-lin-4-3p MIMAT0015092 Caenorhabditis elegans lin-4-3p 12 80
>hsa-miR-7851-3p MIMAT0030426 Homo sapiens miR-7851-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acctggg 7
|||||||
Sbjct: 2 acctggg 8
>dev-miR-D12-5p MIMAT0028184 Duck enteritis miR-D12-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acctggg 7
|||||||
Sbjct: 2 acctggg 8
>hsa-miR-6742-3p MIMAT0027386 Homo sapiens miR-6742-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acctggg 7
|||||||
Sbjct: 1 acctggg 7
>hsa-miR-4726-3p MIMAT0019846 Homo sapiens miR-4726-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acctggg 7
|||||||
Sbjct: 8 acctggg 2
>mmu-miR-3090-3p MIMAT0014902 Mus musculus miR-3090-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acctggg 7
|||||||
Sbjct: 8 acctggg 2
>ppt-miR900-5p MIMAT0004961 Physcomitrella patens miR900-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acctggg 7
|||||||
Sbjct: 8 acctggg 2
>ssc-miR-9805-3p MIMAT0037023 Sus scrofa miR-9805-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>ssc-miR-9804-5p MIMAT0037022 Sus scrofa miR-9804-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>oha-miR-490-3p MIMAT0036937 Ophiophagus hannah miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>oha-miR-221-5p MIMAT0036846 Ophiophagus hannah miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>chi-miR-490 MIMAT0036250 Capra hircus miR-490
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>chi-miR-331-3p MIMAT0036146 Capra hircus miR-331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>chi-miR-221-5p MIMAT0036068 Capra hircus miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>chi-miR-1343 MIMAT0035950 Capra hircus miR-1343
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>dvi-miR-190-3p MIMAT0035561 Drosophila virilis miR-190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>nve-miR-9454 MIMAT0035415 Nematostella vectensis miR-9454
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctgg 6
||||||
Sbjct: 8 acctgg 3
>efu-miR-221 MIMAT0035196 Eptesicus fuscus miR-221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>efu-miR-9237a MIMAT0034853 Eptesicus fuscus miR-9237a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>eca-miR-8931 MIMAT0034459 Equus caballus miR-8931
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 1 cctggg 6
>cfa-miR-8886 MIMAT0034390 Canis familiaris miR-8886
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 7 cctggg 2
>cfa-miR-1343 MIMAT0034357 Canis familiaris miR-1343
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>pxy-miR-306 MIMAT0033787 Plutella xylostella miR-306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctgg 6
||||||
Sbjct: 6 acctgg 1
>ppc-miR-8342-3p MIMAT0033230 Pristionchus pacificus miR-8342-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>cpa-miR8155 MIMAT0031853 Carica papaya miR8155
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>ppe-miR1511-3p MIMAT0031522 Prunus persica miR1511-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>hsa-miR-8089 MIMAT0031016 Homo sapiens miR-8089
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 1 cctggg 6
>hsa-miR-8073 MIMAT0031000 Homo sapiens miR-8073
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>prd-miR-76-5p MIMAT0030818 Panagrellus redivivus miR-76-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctgg 6
||||||
Sbjct: 6 acctgg 1
>prd-miR-87-5p MIMAT0030656 Panagrellus redivivus miR-87-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>prd-miR-7880a-5p MIMAT0030518 Panagrellus redivivus
miR-7880a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>mmu-miR-7665-3p MIMAT0029837 Mus musculus miR-7665-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctgg 6
||||||
Sbjct: 8 acctgg 3
>gga-miR-7482-5p MIMAT0029118 Gallus gallus miR-7482-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 1 cctggg 6
>mmu-miR-7032-5p MIMAT0027968 Mus musculus miR-7032-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>mmu-miR-7005-5p MIMAT0027914 Mus musculus miR-7005-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 1 cctggg 6
>mmu-miR-6990-5p MIMAT0027882 Mus musculus miR-6990-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>hsa-miR-6791-5p MIMAT0027482 Homo sapiens miR-6791-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>hsa-miR-6783-3p MIMAT0027467 Homo sapiens miR-6783-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>hsa-miR-6765-3p MIMAT0027431 Homo sapiens miR-6765-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>hsa-miR-6764-5p MIMAT0027428 Homo sapiens miR-6764-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 7 cctggg 2
>pol-miR-221-5p MIMAT0025448 Paralichthys olivaceus miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>ssc-miR-490 MIMAT0025376 Sus scrofa miR-490
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>hme-miR-6310-3p MIMAT0025017 Heliconius melpomene miR-6310-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acctgg 6
||||||
Sbjct: 6 acctgg 1
>hbr-miR6167 MIMAT0024785 Hevea brasiliensis miR6167
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 8 cctggg 3
>ppy-miR-3661 MIMAT0024388 Pongo pygmaeus miR-3661
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>ggo-miR-1343 MIMAT0024257 Gorilla gorilla miR-1343
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>ggo-miR-490 MIMAT0024205 Gorilla gorilla miR-490
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>cgr-miR-221-5p MIMAT0023858 Cricetulus griseus miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>cgr-miR-1343 MIMAT0023761 Cricetulus griseus miR-1343
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>aca-miR-490-3p MIMAT0021977 Anolis carolinensis miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>rgl-miR5139 MIMAT0020650 Rehmannia glutinosa miR5139
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>ssc-miR-1343 MIMAT0020596 Sus scrofa miR-1343
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>hsa-miR-1343-3p MIMAT0019776 Homo sapiens miR-1343-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>hsa-miR-4685-5p MIMAT0019771 Homo sapiens miR-4685-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>pma-miR-146-3p MIMAT0019479 Petromyzon marinus miR-146-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>hsa-miR-3690 MIMAT0018119 Homo sapiens miR-3690
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>hsa-miR-3661 MIMAT0018082 Homo sapiens miR-3661
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>ssc-miR-484 MIMAT0017974 Sus scrofa miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>ssc-miR-490-3p MIMAT0022960 Sus scrofa miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>hsa-miR-4292 MIMAT0016919 Homo sapiens miR-4292
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>rno-miR-3594-5p MIMAT0017898 Rattus norvegicus miR-3594-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>ppy-miR-631 MIMAT0016070 Pongo pygmaeus miR-631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>ppy-miR-490-3p MIMAT0015910 Pongo pygmaeus miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>aly-miR869-3p MIMAT0017696 Arabidopsis lyrata miR869-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 1 cctggg 6
>hsa-miR-3187-5p MIMAT0019216 Homo sapiens miR-3187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 1 cctggg 6
>tgu-miR-490-3p MIMAT0014548 Taeniopygia guttata miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>tgu-miR-221-5p MIMAT0026976 Taeniopygia guttata miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>ssc-miR-361-3p MIMAT0013934 Sus scrofa miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 8 cctggg 3
>eca-miR-490-3p MIMAT0012945 Equus caballus miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>rno-miR-490-3p MIMAT0012823 Rattus norvegicus miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>ptr-miR-661 MIMAT0012814 Pan troglodytes miR-661
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>ptr-miR-631 MIMAT0012812 Pan troglodytes miR-631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>dsi-miR-190-3p MIMAT0012450 Drosophila simulans miR-190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>dps-miR-190-3p MIMAT0012228 Drosophila pseudoobscura miR-190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>bta-miR-1343-3p MIMAT0011840 Bos taurus miR-1343-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>ppc-miR-2240c MIMAT0011691 Pristionchus pacificus miR-2240c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 7 cctggg 2
>ppc-miR-2240b MIMAT0011689 Pristionchus pacificus miR-2240b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 7 cctggg 2
>crm-miR-246-5p MIMAT0011571 Caenorhabditis remanei miR-246-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>cfa-miR-490 MIMAT0009875 Canis familiaris miR-490
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>bta-miR-631 MIMAT0009357 Bos taurus miR-631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>bta-miR-490 MIMAT0009331 Bos taurus miR-490
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>tca-miR-190-3p MIMAT0019119 Tribolium castaneum miR-190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>ptr-miR-490 MIMAT0008165 Pan troglodytes miR-490
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>ssc-miR-221-5p MIMAT0022949 Sus scrofa miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>mml-miR-661 MIMAT0006500 Macaca mulatta miR-661
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>mml-miR-631 MIMAT0006476 Macaca mulatta miR-631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>mml-miR-490-3p MIMAT0006351 Macaca mulatta miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>gga-miR-1635 MIMAT0007508 Gallus gallus miR-1635
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 8 cctggg 3
>oan-miR-221-5p MIMAT0007134 Ornithorhynchus anatinus miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>oan-miR-1356 MIMAT0006953 Ornithorhynchus anatinus miR-1356
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>oan-miR-490-3p MIMAT0006811 Ornithorhynchus anatinus miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>ptr-miR-510 MIMAT0005775 Pan troglodytes miR-510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 8 cctggg 3
>cre-miR1157-5p MIMAT0005407 Chlamydomonas reinhardtii
miR1157-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>dme-miR-190-3p MIMAT0020848 Drosophila melanogaster miR-190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 6 cctggg 1
>mdo-miR-221-5p MIMAT0026701 Monodelphis domestica miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>mmu-miR-490-3p MIMAT0003780 Mus musculus miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>rlcv-miR-rL1-13-5p MIMAT0019090 Rhesus lymphocryptovirus
miR-rL1-13-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 1 cctggg 6
>gga-miR-490-3p MIMAT0003366 Gallus gallus miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>hsa-miR-661 MIMAT0003324 Homo sapiens miR-661
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctggg 7
||||||
Sbjct: 3 cctggg 8
>hsa-miR-631 MIMAT0003300 Homo sapiens miR-631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>rno-miR-361-3p MIMAT0017199 Rattus norvegicus miR-361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctggg 7
||||||
Sbjct: 8 cctggg 3
>hsa-miR-490-3p MIMAT0002806 Homo sapiens miR-490-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
>mml-miR-221-5p MIMAT0026590 Macaca mulatta miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>dre-miR-221-5p MIMAT0031926 Danio rerio miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>rno-miR-221-5p MIMAT0017163 Rattus norvegicus miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>cel-miR-358-5p MIMAT0015120 Caenorhabditis elegans miR-358-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>mmu-miR-221-5p MIMAT0017060 Mus musculus miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>hsa-miR-221-5p MIMAT0004568 Homo sapiens miR-221-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 1 acctgg 6
>cel-lin-4-3p MIMAT0015092 Caenorhabditis elegans lin-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acctgg 6
||||||
Sbjct: 3 acctgg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 138
Number of extensions: 132
Number of successful extensions: 108
Number of sequences better than 100.0: 108
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 108
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
