BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart11-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pma-miR-210 MIMAT0019522 Petromyzon marinus miR-210 16 6.9
ebv-miR-BART11-3p MIMAT0003422 Epstein Barr miR-BART11-3p 16 6.9
oha-miR-210-3p MIMAT0036827 Ophiophagus hannah miR-210-3p 14 27
oha-miR-147-3p MIMAT0036732 Ophiophagus hannah miR-147-3p 14 27
tch-miR-147b MIMAT0036512 Tupaia chinensis miR-147b 14 27
tch-miR-210 MIMAT0036464 Tupaia chinensis miR-210 14 27
chi-miR-147-3p MIMAT0035975 Capra hircus miR-147-3p 14 27
ppc-miR-8352-5p MIMAT0033256 Pristionchus pacificus miR-8352-5p 14 27
ppc-miR-8230-3p MIMAT0032907 Pristionchus pacificus miR-8230-3p 14 27
ssa-miR-210-3p MIMAT0032509 Salmo salar miR-210-3p 14 27
bbe-miR-210-5p MIMAT0031645 Branchiostoma belcheri miR-210-5p 14 27
lva-miR-210-3p MIMAT0032214 Lytechinus variegatus miR-210-3p 14 27
pmi-miR-210-3p MIMAT0032167 Patiria miniata miR-210-3p 14 27
ipu-miR-210 MIMAT0029464 Ictalurus punctatus miR-210 14 27
oan-miR-7409-3p MIMAT0028965 Ornithorhynchus anatinus miR-7409-3p 14 27
mdo-miR-7336-3p MIMAT0028681 Monodelphis domestica miR-7336-3p 14 27
ccr-miR-210 MIMAT0026268 Cyprinus carpio miR-210 14 27
hhi-miR-147b MIMAT0025527 Hippoglossus hippoglossus miR-147b 14 27
prv-miR-LLT3 MIMAT0025306 Pseudorabies virus miR-LLT3 14 27
hme-miR-3286 MIMAT0024979 Heliconius melpomene miR-3286 14 27
mse-miR-3286 MIMAT0024421 Manduca sexta miR-3286 14 27
ggo-miR-210 MIMAT0024146 Gorilla gorilla miR-210 14 27
cgr-miR-210-3p MIMAT0023849 Cricetulus griseus miR-210-3p 14 27
cgr-miR-147 MIMAT0023777 Cricetulus griseus miR-147 14 27
tur-miR-210-3p MIMAT0023071 Tetranychus urticae miR-210-3p 14 27
aca-miR-210-3p MIMAT0021868 Anolis carolinensis miR-210-3p 14 27
aca-miR-147 MIMAT0021779 Anolis carolinensis miR-147 14 27
pma-miR-147 MIMAT0019480 Petromyzon marinus miR-147 14 27
oar-miR-3957-3p MIMAT0019326 Ovis aries miR-3957-3p 14 27
ngi-miR-210 MIMAT0018399 Nasonia giraulti miR-210 14 27
ppy-miR-147b MIMAT0015770 Pongo pygmaeus miR-147b 14 27
nvi-miR-210 MIMAT0015695 Nasonia vitripennis miR-210 14 27
bmo-miR-3286-3p MIMAT0015473 Bombyx mori miR-3286-3p 14 27
api-miR-210 MIMAT0014716 Acyrthosiphon pisum miR-210 14 27
tgu-miR-147 MIMAT0014606 Taeniopygia guttata miR-147 14 27
mdo-miR-147b MIMAT0012757 Monodelphis domestica miR-147b 14 27
cte-miR-210b MIMAT0013572 Capitella teleta miR-210b 14 27
sme-miR-2164-3p MIMAT0011259 Schmidtea mediterranea miR-2164-3p 14 27
sme-miR-2161-3p MIMAT0011255 Schmidtea mediterranea miR-2161-3p 14 27
cfa-miR-147 MIMAT0009874 Canis familiaris miR-147 14 27
spu-miR-210 MIMAT0009646 Strongylocentrotus purpuratus miR-210 14 27
sko-miR-210-3p MIMAT0009636 Saccoglossus kowalevskii miR-210-3p 14 27
bfl-miR-210-3p MIMAT0009494 Branchiostoma floridae miR-210-3p 14 27
bta-miR-147 MIMAT0009237 Bos taurus miR-147 14 27
dya-miR-210 MIMAT0009095 Drosophila yakuba miR-210 14 27
dwi-miR-210 MIMAT0009020 Drosophila willistoni miR-210 14 27
dvi-miR-210-3p MIMAT0008928 Drosophila virilis miR-210-3p 14 27
dsi-miR-210 MIMAT0008849 Drosophila simulans miR-210 14 27
dse-miR-210 MIMAT0008776 Drosophila sechellia miR-210 14 27
dpe-miR-210 MIMAT0008704 Drosophila persimilis miR-210 14 27
dmo-miR-210 MIMAT0008667 Drosophila mojavensis miR-210 14 27
dgr-miR-210 MIMAT0008613 Drosophila grimshawi miR-210 14 27
der-miR-210 MIMAT0008546 Drosophila erecta miR-210 14 27
dan-miR-210 MIMAT0008433 Drosophila ananassae miR-210 14 27
tca-miR-210-3p MIMAT0008376 Tribolium castaneum miR-210-3p 14 27
ptr-miR-210 MIMAT0008070 Pan troglodytes miR-210 14 27
ptr-miR-147b MIMAT0008040 Pan troglodytes miR-147b 14 27
bmo-miR-210 MIMAT0007903 Bombyx mori miR-210 14 27
ssc-miR-210 MIMAT0007761 Sus scrofa miR-210 14 27
mml-miR-210-3p MIMAT0006240 Macaca mulatta miR-210-3p 14 27
mml-miR-147b MIMAT0006207 Macaca mulatta miR-147b 14 27
oan-miR-147 MIMAT0007003 Ornithorhynchus anatinus miR-147 14 27
rno-miR-147 MIMAT0005297 Rattus norvegicus miR-147 14 27
hsa-miR-147b MIMAT0004928 Homo sapiens miR-147b 14 27
mmu-miR-147-3p MIMAT0004857 Mus musculus miR-147-3p 14 27
xtr-miR-210 MIMAT0003624 Xenopus tropicalis miR-210 14 27
gga-miR-147 MIMAT0003352 Gallus gallus miR-147 14 27
tni-miR-210 MIMAT0003096 Tetraodon nigroviridis miR-210 14 27
fru-miR-210 MIMAT0003095 Fugu rubripes miR-210 14 27
aga-miR-210 MIMAT0001505 Anopheles gambiae miR-210 14 27
ame-miR-210 MIMAT0001477 Apis mellifera miR-210 14 27
dre-miR-210-3p MIMAT0001281 Danio rerio miR-210-3p 14 27
dps-miR-210a MIMAT0001233 Drosophila pseudoobscura miR-210a 14 27
rno-miR-210-3p MIMAT0000881 Rattus norvegicus miR-210-3p 14 27
mmu-miR-210-3p MIMAT0000658 Mus musculus miR-210-3p 14 27
hsa-miR-210-3p MIMAT0000267 Homo sapiens miR-210-3p 14 27
>pma-miR-210 MIMAT0019522 Petromyzon marinus miR-210
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 acgcacac 8
||||||||
Sbjct: 8 acgcacac 1
>ebv-miR-BART11-3p MIMAT0003422 Epstein Barr miR-BART11-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 acgcacac 8
||||||||
Sbjct: 1 acgcacac 8
>oha-miR-210-3p MIMAT0036827 Ophiophagus hannah miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>oha-miR-147-3p MIMAT0036732 Ophiophagus hannah miR-147-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>tch-miR-147b MIMAT0036512 Tupaia chinensis miR-147b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>tch-miR-210 MIMAT0036464 Tupaia chinensis miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>chi-miR-147-3p MIMAT0035975 Capra hircus miR-147-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>ppc-miR-8352-5p MIMAT0033256 Pristionchus pacificus miR-8352-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 7 acgcaca 1
>ppc-miR-8230-3p MIMAT0032907 Pristionchus pacificus miR-8230-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgcaca 7
|||||||
Sbjct: 1 acgcaca 7
>ssa-miR-210-3p MIMAT0032509 Salmo salar miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>bbe-miR-210-5p MIMAT0031645 Branchiostoma belcheri miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>lva-miR-210-3p MIMAT0032214 Lytechinus variegatus miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>pmi-miR-210-3p MIMAT0032167 Patiria miniata miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>ipu-miR-210 MIMAT0029464 Ictalurus punctatus miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>oan-miR-7409-3p MIMAT0028965 Ornithorhynchus anatinus
miR-7409-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 8 cgcacac 2
>mdo-miR-7336-3p MIMAT0028681 Monodelphis domestica miR-7336-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgcacac 8
|||||||
Sbjct: 2 cgcacac 8
>ccr-miR-210 MIMAT0026268 Cyprinus carpio miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>hhi-miR-147b MIMAT0025527 Hippoglossus hippoglossus miR-147b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>prv-miR-LLT3 MIMAT0025306 Pseudorabies virus miR-LLT3
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgcacac 8
|||||||
Sbjct: 1 cgcacac 7
>hme-miR-3286 MIMAT0024979 Heliconius melpomene miR-3286
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>mse-miR-3286 MIMAT0024421 Manduca sexta miR-3286
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>ggo-miR-210 MIMAT0024146 Gorilla gorilla miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>cgr-miR-210-3p MIMAT0023849 Cricetulus griseus miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>cgr-miR-147 MIMAT0023777 Cricetulus griseus miR-147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>tur-miR-210-3p MIMAT0023071 Tetranychus urticae miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>aca-miR-210-3p MIMAT0021868 Anolis carolinensis miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>aca-miR-147 MIMAT0021779 Anolis carolinensis miR-147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>pma-miR-147 MIMAT0019480 Petromyzon marinus miR-147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>oar-miR-3957-3p MIMAT0019326 Ovis aries miR-3957-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgcaca 7
|||||||
Sbjct: 1 acgcaca 7
>ngi-miR-210 MIMAT0018399 Nasonia giraulti miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>ppy-miR-147b MIMAT0015770 Pongo pygmaeus miR-147b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>nvi-miR-210 MIMAT0015695 Nasonia vitripennis miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>bmo-miR-3286-3p MIMAT0015473 Bombyx mori miR-3286-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>api-miR-210 MIMAT0014716 Acyrthosiphon pisum miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>tgu-miR-147 MIMAT0014606 Taeniopygia guttata miR-147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>mdo-miR-147b MIMAT0012757 Monodelphis domestica miR-147b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>cte-miR-210b MIMAT0013572 Capitella teleta miR-210b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>sme-miR-2164-3p MIMAT0011259 Schmidtea mediterranea miR-2164-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>sme-miR-2161-3p MIMAT0011255 Schmidtea mediterranea miR-2161-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 7 acgcaca 1
>cfa-miR-147 MIMAT0009874 Canis familiaris miR-147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>spu-miR-210 MIMAT0009646 Strongylocentrotus purpuratus miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>sko-miR-210-3p MIMAT0009636 Saccoglossus kowalevskii miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>bfl-miR-210-3p MIMAT0009494 Branchiostoma floridae miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>bta-miR-147 MIMAT0009237 Bos taurus miR-147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>dya-miR-210 MIMAT0009095 Drosophila yakuba miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>dwi-miR-210 MIMAT0009020 Drosophila willistoni miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>dvi-miR-210-3p MIMAT0008928 Drosophila virilis miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>dsi-miR-210 MIMAT0008849 Drosophila simulans miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>dse-miR-210 MIMAT0008776 Drosophila sechellia miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>dpe-miR-210 MIMAT0008704 Drosophila persimilis miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>dmo-miR-210 MIMAT0008667 Drosophila mojavensis miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>dgr-miR-210 MIMAT0008613 Drosophila grimshawi miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>der-miR-210 MIMAT0008546 Drosophila erecta miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>dan-miR-210 MIMAT0008433 Drosophila ananassae miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>tca-miR-210-3p MIMAT0008376 Tribolium castaneum miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>ptr-miR-210 MIMAT0008070 Pan troglodytes miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>ptr-miR-147b MIMAT0008040 Pan troglodytes miR-147b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>bmo-miR-210 MIMAT0007903 Bombyx mori miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>ssc-miR-210 MIMAT0007761 Sus scrofa miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>mml-miR-210-3p MIMAT0006240 Macaca mulatta miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>mml-miR-147b MIMAT0006207 Macaca mulatta miR-147b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>oan-miR-147 MIMAT0007003 Ornithorhynchus anatinus miR-147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>rno-miR-147 MIMAT0005297 Rattus norvegicus miR-147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>hsa-miR-147b MIMAT0004928 Homo sapiens miR-147b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>mmu-miR-147-3p MIMAT0004857 Mus musculus miR-147-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>xtr-miR-210 MIMAT0003624 Xenopus tropicalis miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>gga-miR-147 MIMAT0003352 Gallus gallus miR-147
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacac 8
|||||||
Sbjct: 7 cgcacac 1
>tni-miR-210 MIMAT0003096 Tetraodon nigroviridis miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>fru-miR-210 MIMAT0003095 Fugu rubripes miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>aga-miR-210 MIMAT0001505 Anopheles gambiae miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>ame-miR-210 MIMAT0001477 Apis mellifera miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>dre-miR-210-3p MIMAT0001281 Danio rerio miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>dps-miR-210a MIMAT0001233 Drosophila pseudoobscura miR-210a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>rno-miR-210-3p MIMAT0000881 Rattus norvegicus miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>mmu-miR-210-3p MIMAT0000658 Mus musculus miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
>hsa-miR-210-3p MIMAT0000267 Homo sapiens miR-210-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcaca 7
|||||||
Sbjct: 8 acgcaca 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 242
Number of extensions: 164
Number of successful extensions: 139
Number of sequences better than 100.0: 76
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 76
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)