BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh70
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR7739-5p MIMAT0030214 Brachypodium distachyon miR7739-5p 14 20
aca-miR-2188-3p MIMAT0021883 Anolis carolinensis miR-2188-3p 14 20
tch-miR-324-5p MIMAT0036596 Tupaia chinensis miR-324-5p 12 80
tch-miR-9771i MIMAT0036555 Tupaia chinensis miR-9771i 12 80
chi-miR-324-5p MIMAT0036135 Capra hircus miR-324-5p 12 80
prd-miR-7919-5p MIMAT0030678 Panagrellus redivivus miR-7919-5p 12 80
mdo-miR-7318-3p MIMAT0028637 Monodelphis domestica miR-7318-3p 12 80
bmo-miR-6497-3p MIMAT0025322 Bombyx mori miR-6497-3p 12 80
ppy-miR-3912 MIMAT0024387 Pongo pygmaeus miR-3912 12 80
ggo-miR-324 MIMAT0024130 Gorilla gorilla miR-324 12 80
cgr-miR-324-5p MIMAT0023909 Cricetulus griseus miR-324-5p 12 80
ame-miR-6005-3p MIMAT0023550 Apis mellifera miR-6005-3p 12 80
hsa-miR-4787-3p MIMAT0019957 Homo sapiens miR-4787-3p 12 80
hsa-miR-3912-3p MIMAT0018186 Homo sapiens miR-3912-3p 12 80
ppy-miR-324-5p MIMAT0015827 Pongo pygmaeus miR-324-5p 12 80
aly-miR839-3p MIMAT0017624 Arabidopsis lyrata miR839-3p 12 80
ssc-miR-324 MIMAT0013957 Sus scrofa miR-324 12 80
eca-miR-324-5p MIMAT0013033 Equus caballus miR-324-5p 12 80
bta-miR-2419-5p MIMAT0011985 Bos taurus miR-2419-5p 12 80
cfa-miR-324 MIMAT0009896 Canis familiaris miR-324 12 80
bta-miR-324 MIMAT0009285 Bos taurus miR-324 12 80
mml-miR-324-5p MIMAT0006266 Macaca mulatta miR-324-5p 12 80
hsa-miR-324-5p MIMAT0000761 Homo sapiens miR-324-5p 12 80
cel-lsy-6-5p MIMAT0031896 Caenorhabditis elegans lsy-6-5p 12 80
mmu-miR-324-5p MIMAT0000555 Mus musculus miR-324-5p 12 80
rno-miR-324-5p MIMAT0000553 Rattus norvegicus miR-324-5p 12 80
>bdi-miR7739-5p MIMAT0030214 Brachypodium distachyon miR7739-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcatc 7
|||||||
Sbjct: 8 acgcatc 2
>aca-miR-2188-3p MIMAT0021883 Anolis carolinensis miR-2188-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgcatc 7
|||||||
Sbjct: 7 acgcatc 1
>tch-miR-324-5p MIMAT0036596 Tupaia chinensis miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>tch-miR-9771i MIMAT0036555 Tupaia chinensis miR-9771i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgcat 6
||||||
Sbjct: 8 acgcat 3
>chi-miR-324-5p MIMAT0036135 Capra hircus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>prd-miR-7919-5p MIMAT0030678 Panagrellus redivivus miR-7919-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgcat 6
||||||
Sbjct: 8 acgcat 3
>mdo-miR-7318-3p MIMAT0028637 Monodelphis domestica miR-7318-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgcat 6
||||||
Sbjct: 6 acgcat 1
>bmo-miR-6497-3p MIMAT0025322 Bombyx mori miR-6497-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcatc 7
||||||
Sbjct: 6 cgcatc 1
>ppy-miR-3912 MIMAT0024387 Pongo pygmaeus miR-3912
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgcat 6
||||||
Sbjct: 3 acgcat 8
>ggo-miR-324 MIMAT0024130 Gorilla gorilla miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>cgr-miR-324-5p MIMAT0023909 Cricetulus griseus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>ame-miR-6005-3p MIMAT0023550 Apis mellifera miR-6005-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgcat 6
||||||
Sbjct: 8 acgcat 3
>hsa-miR-4787-3p MIMAT0019957 Homo sapiens miR-4787-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcatc 7
||||||
Sbjct: 6 cgcatc 1
>hsa-miR-3912-3p MIMAT0018186 Homo sapiens miR-3912-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgcat 6
||||||
Sbjct: 3 acgcat 8
>ppy-miR-324-5p MIMAT0015827 Pongo pygmaeus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>aly-miR839-3p MIMAT0017624 Arabidopsis lyrata miR839-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgcat 6
||||||
Sbjct: 3 acgcat 8
>ssc-miR-324 MIMAT0013957 Sus scrofa miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>eca-miR-324-5p MIMAT0013033 Equus caballus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>bta-miR-2419-5p MIMAT0011985 Bos taurus miR-2419-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 3 cgcatc 8
>cfa-miR-324 MIMAT0009896 Canis familiaris miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>bta-miR-324 MIMAT0009285 Bos taurus miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>mml-miR-324-5p MIMAT0006266 Macaca mulatta miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>hsa-miR-324-5p MIMAT0000761 Homo sapiens miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>cel-lsy-6-5p MIMAT0031896 Caenorhabditis elegans lsy-6-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgcat 6
||||||
Sbjct: 8 acgcat 3
>mmu-miR-324-5p MIMAT0000555 Mus musculus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
>rno-miR-324-5p MIMAT0000553 Rattus norvegicus miR-324-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcatc 7
||||||
Sbjct: 1 cgcatc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 34
Number of extensions: 32
Number of successful extensions: 26
Number of sequences better than 100.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
