BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s14
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mtr-miR5282 MIMAT0021326 Medicago truncatula miR5282 14 20
ssc-miR-9814-3p MIMAT0037032 Sus scrofa miR-9814-3p 12 80
oha-miR-191-5p MIMAT0036777 Ophiophagus hannah miR-191-5p 12 80
tch-miR-191-5p MIMAT0036571 Tupaia chinensis miR-191-5p 12 80
ocu-miR-191-5p MIMAT0036335 Oryctolagus cuniculus miR-191-5p 12 80
chi-miR-191-5p MIMAT0036022 Capra hircus miR-191-5p 12 80
efu-miR-9340 MIMAT0035104 Eptesicus fuscus miR-9340 12 80
atr-miR8590 MIMAT0033877 Amborella trichopoda miR8590 12 80
ssa-miR-462b-5p MIMAT0032655 Salmo salar miR-462b-5p 12 80
ssa-miR-462a-5p MIMAT0032653 Salmo salar miR-462a-5p 12 80
bdi-miR7762-3p MIMAT0030271 Brachypodium distachyon miR7762-3p 12 80
oar-miR-191 MIMAT0030038 Ovis aries miR-191 12 80
mmu-miR-7683-5p MIMAT0029886 Mus musculus miR-7683-5p 12 80
ipu-miR-462 MIMAT0029519 Ictalurus punctatus miR-462 12 80
mmu-miR-7004-5p MIMAT0027912 Mus musculus miR-7004-5p 12 80
mmu-miR-6906-3p MIMAT0027713 Mus musculus miR-6906-3p 12 80
bta-miR-6522 MIMAT0025540 Bos taurus miR-6522 12 80
mja-miR-6489-3p MIMAT0025297 Marsupenaeus japonicus miR-6489-3p 12 80
ggo-miR-191 MIMAT0024093 Gorilla gorilla miR-191 12 80
cgr-miR-191-5p MIMAT0023822 Cricetulus griseus miR-191-5p 12 80
hco-miR-5951 MIMAT0023453 Haemonchus contortus miR-5951 12 80
osa-miR5810 MIMAT0023282 Oryza sativa miR5810 12 80
osa-miR812u MIMAT0023273 Oryza sativa miR812u 12 80
osa-miR812t MIMAT0023272 Oryza sativa miR812t 12 80
aca-miR-5403 MIMAT0022016 Anolis carolinensis miR-5403 12 80
aca-miR-191-5p MIMAT0021824 Anolis carolinensis miR-191-5p 12 80
aca-miR-5390 MIMAT0021688 Anolis carolinensis miR-5390 12 80
osa-miR812n-3p MIMAT0019680 Oryza sativa miR812n-3p 12 80
sja-miR-3503 MIMAT0016312 Schistosoma japonicum miR-3503 12 80
ppy-miR-191 MIMAT0015785 Pongo pygmaeus miR-191 12 80
bmo-miR-3364 MIMAT0015550 Bombyx mori miR-3364 12 80
ssc-miR-191 MIMAT0013876 Sus scrofa miR-191 12 80
eca-miR-191a MIMAT0013079 Equus caballus miR-191a 12 80
dvi-miR-283-3p MIMAT0032061 Drosophila virilis miR-283-3p 12 80
ptr-miR-191 MIMAT0008056 Pan troglodytes miR-191 12 80
osa-miR1868 MIMAT0007820 Oryza sativa miR1868 12 80
cfa-miR-191 MIMAT0006638 Canis familiaris miR-191 12 80
mml-miR-191-5p MIMAT0006223 Macaca mulatta miR-191-5p 12 80
oan-miR-191-5p MIMAT0007152 Ornithorhynchus anatinus miR-191-5p 12 80
mdo-miR-191-5p MIMAT0004152 Monodelphis domestica miR-191-5p 12 80
bta-miR-191 MIMAT0003819 Bos taurus miR-191 12 80
xtr-miR-191 MIMAT0003689 Xenopus tropicalis miR-191 12 80
dre-miR-462 MIMAT0001855 Danio rerio miR-462 12 80
rno-miR-191a-5p MIMAT0000866 Rattus norvegicus miR-191a-5p 12 80
hsa-miR-191-5p MIMAT0000440 Homo sapiens miR-191-5p 12 80
dme-miR-283-3p MIMAT0020810 Drosophila melanogaster miR-283-3p 12 80
mmu-miR-191-5p MIMAT0000221 Mus musculus miR-191-5p 12 80
>mtr-miR5282 MIMAT0021326 Medicago truncatula miR5282
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggaat 7
|||||||
Sbjct: 2 acggaat 8
>ssc-miR-9814-3p MIMAT0037032 Sus scrofa miR-9814-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaat 7
||||||
Sbjct: 1 cggaat 6
>oha-miR-191-5p MIMAT0036777 Ophiophagus hannah miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>tch-miR-191-5p MIMAT0036571 Tupaia chinensis miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>ocu-miR-191-5p MIMAT0036335 Oryctolagus cuniculus miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>chi-miR-191-5p MIMAT0036022 Capra hircus miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>efu-miR-9340 MIMAT0035104 Eptesicus fuscus miR-9340
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaat 7
||||||
Sbjct: 3 cggaat 8
>atr-miR8590 MIMAT0033877 Amborella trichopoda miR8590
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggaat 7
||||||
Sbjct: 6 cggaat 1
>ssa-miR-462b-5p MIMAT0032655 Salmo salar miR-462b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>ssa-miR-462a-5p MIMAT0032653 Salmo salar miR-462a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>bdi-miR7762-3p MIMAT0030271 Brachypodium distachyon miR7762-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaat 7
||||||
Sbjct: 3 cggaat 8
>oar-miR-191 MIMAT0030038 Ovis aries miR-191
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>mmu-miR-7683-5p MIMAT0029886 Mus musculus miR-7683-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggaa 6
||||||
Sbjct: 6 acggaa 1
>ipu-miR-462 MIMAT0029519 Ictalurus punctatus miR-462
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>mmu-miR-7004-5p MIMAT0027912 Mus musculus miR-7004-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggaa 6
||||||
Sbjct: 6 acggaa 1
>mmu-miR-6906-3p MIMAT0027713 Mus musculus miR-6906-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggaat 7
||||||
Sbjct: 8 cggaat 3
>bta-miR-6522 MIMAT0025540 Bos taurus miR-6522
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaat 7
||||||
Sbjct: 2 cggaat 7
>mja-miR-6489-3p MIMAT0025297 Marsupenaeus japonicus miR-6489-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>ggo-miR-191 MIMAT0024093 Gorilla gorilla miR-191
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>cgr-miR-191-5p MIMAT0023822 Cricetulus griseus miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>hco-miR-5951 MIMAT0023453 Haemonchus contortus miR-5951
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggaa 6
||||||
Sbjct: 8 acggaa 3
>osa-miR5810 MIMAT0023282 Oryza sativa miR5810
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 1 acggaa 6
>osa-miR812u MIMAT0023273 Oryza sativa miR812u
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 1 acggaa 6
>osa-miR812t MIMAT0023272 Oryza sativa miR812t
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 1 acggaa 6
>aca-miR-5403 MIMAT0022016 Anolis carolinensis miR-5403
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 1 acggaa 6
>aca-miR-191-5p MIMAT0021824 Anolis carolinensis miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>aca-miR-5390 MIMAT0021688 Anolis carolinensis miR-5390
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggaat 7
||||||
Sbjct: 8 cggaat 3
>osa-miR812n-3p MIMAT0019680 Oryza sativa miR812n-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 1 acggaa 6
>sja-miR-3503 MIMAT0016312 Schistosoma japonicum miR-3503
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaat 7
||||||
Sbjct: 3 cggaat 8
>ppy-miR-191 MIMAT0015785 Pongo pygmaeus miR-191
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>bmo-miR-3364 MIMAT0015550 Bombyx mori miR-3364
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggaa 6
||||||
Sbjct: 6 acggaa 1
>ssc-miR-191 MIMAT0013876 Sus scrofa miR-191
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>eca-miR-191a MIMAT0013079 Equus caballus miR-191a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>dvi-miR-283-3p MIMAT0032061 Drosophila virilis miR-283-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaat 7
||||||
Sbjct: 1 cggaat 6
>ptr-miR-191 MIMAT0008056 Pan troglodytes miR-191
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>osa-miR1868 MIMAT0007820 Oryza sativa miR1868
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>cfa-miR-191 MIMAT0006638 Canis familiaris miR-191
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>mml-miR-191-5p MIMAT0006223 Macaca mulatta miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>oan-miR-191-5p MIMAT0007152 Ornithorhynchus anatinus miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>mdo-miR-191-5p MIMAT0004152 Monodelphis domestica miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>bta-miR-191 MIMAT0003819 Bos taurus miR-191
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>xtr-miR-191 MIMAT0003689 Xenopus tropicalis miR-191
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>dre-miR-462 MIMAT0001855 Danio rerio miR-462
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>rno-miR-191a-5p MIMAT0000866 Rattus norvegicus miR-191a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>hsa-miR-191-5p MIMAT0000440 Homo sapiens miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
>dme-miR-283-3p MIMAT0020810 Drosophila melanogaster miR-283-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggaat 7
||||||
Sbjct: 1 cggaat 6
>mmu-miR-191-5p MIMAT0000221 Mus musculus miR-191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggaa 6
||||||
Sbjct: 3 acggaa 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 55
Number of extensions: 54
Number of successful extensions: 47
Number of sequences better than 100.0: 47
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 47
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
