BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hhv6b-miR-ro6-3-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8242-5p MIMAT0032942 Pristionchus pacificus miR-8242-5p 14 20
mdo-miR-7317-5p MIMAT0028634 Monodelphis domestica miR-7317-5p 14 20
bma-miR-5856b MIMAT0026355 Brugia malayi miR-5856b 14 20
chi-miR-1468-5p MIMAT0035969 Capra hircus miR-1468-5p 12 80
eca-miR-514a MIMAT0034715 Equus caballus miR-514a 12 80
cfa-miR-1468 MIMAT0034423 Canis familiaris miR-1468 12 80
ppc-miR-8348-5p MIMAT0033244 Pristionchus pacificus miR-8348-5p 12 80
ppc-miR-2253d-5p MIMAT0033003 Pristionchus pacificus miR-2253d-5p 12 80
ppc-miR-2253c-5p MIMAT0033001 Pristionchus pacificus miR-2253c-5p 12 80
gga-miR-7474-5p MIMAT0029102 Gallus gallus miR-7474-5p 12 80
mml-miR-7187-5p MIMAT0028328 Macaca mulatta miR-7187-5p 12 80
sbi-miR6224c-5p MIMAT0026418 Sorghum bicolor miR6224c-5p 12 80
sbi-miR6224b-5p MIMAT0026416 Sorghum bicolor miR6224b-5p 12 80
sbi-miR6224a-5p MIMAT0026414 Sorghum bicolor miR6224a-5p 12 80
bta-miR-6518 MIMAT0025536 Bos taurus miR-6518 12 80
ssc-miR-1468 MIMAT0025386 Sus scrofa miR-1468 12 80
mmu-miR-6416-5p MIMAT0025170 Mus musculus miR-6416-5p 12 80
tur-miR-5736a-5p MIMAT0023100 Tetranychus urticae miR-5736a-5p 12 80
tur-miR-5736b-5p MIMAT0023078 Tetranychus urticae miR-5736b-5p 12 80
bdi-miR5174a MIMAT0020718 Brachypodium distachyon miR5174a 12 80
hsa-miR-5091 MIMAT0021083 Homo sapiens miR-5091 12 80
osa-miR5075 MIMAT0020561 Oryza sativa miR5075 12 80
ppy-miR-1468 MIMAT0016231 Pongo pygmaeus miR-1468 12 80
ppy-miR-510 MIMAT0015935 Pongo pygmaeus miR-510 12 80
eca-miR-1468 MIMAT0013197 Equus caballus miR-1468 12 80
rno-miR-802-3p MIMAT0017362 Rattus norvegicus miR-802-3p 12 80
bta-miR-1468 MIMAT0013592 Bos taurus miR-1468 12 80
bta-miR-2316 MIMAT0011837 Bos taurus miR-2316 12 80
bmo-miR-9b-3p MIMAT0015290 Bombyx mori miR-9b-3p 12 80
gga-miR-1649-3p MIMAT0007527 Gallus gallus miR-1649-3p 12 80
mdv1-miR-M9-3p MIMAT0005980 Mareks disease miR-M9-3p 12 80
pbi-miR-510 MIMAT0005783 Pygathrix bieti miR-510 12 80
mml-miR-510-5p MIMAT0005766 Macaca mulatta miR-510-5p 12 80
ssy-miR-510 MIMAT0005757 Symphalangus syndactylus miR-510 12 80
mdv2-miR-M23-3p MIMAT0012542 Mareks disease miR-M23-3p 12 80
mmu-miR-802-3p MIMAT0017240 Mus musculus miR-802-3p 12 80
hsa-miR-1468-5p MIMAT0006789 Homo sapiens miR-1468-5p 12 80
>ppc-miR-8242-5p MIMAT0032942 Pristionchus pacificus miR-8242-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acggagt 7
|||||||
Sbjct: 7 acggagt 1
>mdo-miR-7317-5p MIMAT0028634 Monodelphis domestica miR-7317-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acggagt 7
|||||||
Sbjct: 8 acggagt 2
>bma-miR-5856b MIMAT0026355 Brugia malayi miR-5856b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acggagt 7
|||||||
Sbjct: 8 acggagt 2
>chi-miR-1468-5p MIMAT0035969 Capra hircus miR-1468-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>eca-miR-514a MIMAT0034715 Equus caballus miR-514a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagt 7
||||||
Sbjct: 8 cggagt 3
>cfa-miR-1468 MIMAT0034423 Canis familiaris miR-1468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>ppc-miR-8348-5p MIMAT0033244 Pristionchus pacificus miR-8348-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagt 7
||||||
Sbjct: 6 cggagt 1
>ppc-miR-2253d-5p MIMAT0033003 Pristionchus pacificus
miR-2253d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagt 7
||||||
Sbjct: 1 cggagt 6
>ppc-miR-2253c-5p MIMAT0033001 Pristionchus pacificus
miR-2253c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagt 7
||||||
Sbjct: 1 cggagt 6
>gga-miR-7474-5p MIMAT0029102 Gallus gallus miR-7474-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggag 6
||||||
Sbjct: 3 acggag 8
>mml-miR-7187-5p MIMAT0028328 Macaca mulatta miR-7187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 8 acggag 3
>sbi-miR6224c-5p MIMAT0026418 Sorghum bicolor miR6224c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>sbi-miR6224b-5p MIMAT0026416 Sorghum bicolor miR6224b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>sbi-miR6224a-5p MIMAT0026414 Sorghum bicolor miR6224a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>bta-miR-6518 MIMAT0025536 Bos taurus miR-6518
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggag 6
||||||
Sbjct: 3 acggag 8
>ssc-miR-1468 MIMAT0025386 Sus scrofa miR-1468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>mmu-miR-6416-5p MIMAT0025170 Mus musculus miR-6416-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>tur-miR-5736a-5p MIMAT0023100 Tetranychus urticae miR-5736a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagt 7
||||||
Sbjct: 3 cggagt 8
>tur-miR-5736b-5p MIMAT0023078 Tetranychus urticae miR-5736b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagt 7
||||||
Sbjct: 3 cggagt 8
>bdi-miR5174a MIMAT0020718 Brachypodium distachyon miR5174a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>hsa-miR-5091 MIMAT0021083 Homo sapiens miR-5091
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggag 6
||||||
Sbjct: 1 acggag 6
>osa-miR5075 MIMAT0020561 Oryza sativa miR5075
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 8 acggag 3
>ppy-miR-1468 MIMAT0016231 Pongo pygmaeus miR-1468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>ppy-miR-510 MIMAT0015935 Pongo pygmaeus miR-510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagt 7
||||||
Sbjct: 7 cggagt 2
>eca-miR-1468 MIMAT0013197 Equus caballus miR-1468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>rno-miR-802-3p MIMAT0017362 Rattus norvegicus miR-802-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggag 6
||||||
Sbjct: 1 acggag 6
>bta-miR-1468 MIMAT0013592 Bos taurus miR-1468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>bta-miR-2316 MIMAT0011837 Bos taurus miR-2316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagt 7
||||||
Sbjct: 6 cggagt 1
>bmo-miR-9b-3p MIMAT0015290 Bombyx mori miR-9b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggag 6
||||||
Sbjct: 1 acggag 6
>gga-miR-1649-3p MIMAT0007527 Gallus gallus miR-1649-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
>mdv1-miR-M9-3p MIMAT0005980 Mareks disease miR-M9-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagt 7
||||||
Sbjct: 8 cggagt 3
>pbi-miR-510 MIMAT0005783 Pygathrix bieti miR-510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagt 7
||||||
Sbjct: 7 cggagt 2
>mml-miR-510-5p MIMAT0005766 Macaca mulatta miR-510-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagt 7
||||||
Sbjct: 7 cggagt 2
>ssy-miR-510 MIMAT0005757 Symphalangus syndactylus miR-510
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagt 7
||||||
Sbjct: 7 cggagt 2
>mdv2-miR-M23-3p MIMAT0012542 Mareks disease miR-M23-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 8 acggag 3
>mmu-miR-802-3p MIMAT0017240 Mus musculus miR-802-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggag 6
||||||
Sbjct: 1 acggag 6
>hsa-miR-1468-5p MIMAT0006789 Homo sapiens miR-1468-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggag 6
||||||
Sbjct: 6 acggag 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 47
Number of extensions: 44
Number of successful extensions: 37
Number of sequences better than 100.0: 37
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 37
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
