BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-orilyt-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cre-miR1151a-3p MIMAT0005394 Chlamydomonas reinhardtii miR1151a-3p 14 20
oha-miR-1329-3p MIMAT0036697 Ophiophagus hannah miR-1329-3p 12 80
chi-miR-193b-5p MIMAT0036027 Capra hircus miR-193b-5p 12 80
efu-miR-193b MIMAT0035100 Eptesicus fuscus miR-193b 12 80
stu-miR408b-5p MIMAT0031339 Solanum tuberosum miR408b-5p 12 80
hsa-miR-7704 MIMAT0030019 Homo sapiens miR-7704 12 80
oan-miR-7424-3p MIMAT0028999 Ornithorhynchus anatinus miR-7424-3p 12 80
mdo-miR-193b-5p MIMAT0028652 Monodelphis domestica miR-193b-5p 12 80
mmu-miR-7036a-5p MIMAT0027976 Mus musculus miR-7036a-5p 12 80
hsa-miR-6777-5p MIMAT0027454 Homo sapiens miR-6777-5p 12 80
ggo-miR-193b MIMAT0024138 Gorilla gorilla miR-193b 12 80
cgr-miR-193b-5p MIMAT0023825 Cricetulus griseus miR-193b-5p 12 80
aca-miR-5404 MIMAT0022017 Anolis carolinensis miR-5404 12 80
aca-miR-425-3p MIMAT0021955 Anolis carolinensis miR-425-3p 12 80
bfl-miR-4903 MIMAT0020498 Branchiostoma floridae miR-4903 12 80
hsa-miR-4651 MIMAT0019715 Homo sapiens miR-4651 12 80
pma-miR-4590 MIMAT0019623 Petromyzon marinus miR-4590 12 80
pma-miR-4544-3p MIMAT0019574 Petromyzon marinus miR-4544-3p 12 80
tca-miR-3852-5p MIMAT0018760 Tribolium castaneum miR-3852-5p 12 80
cin-miR-4109-5p MIMAT0016696 Ciona intestinalis miR-4109-5p 12 80
tgu-miR-193a-5p MIMAT0027014 Taeniopygia guttata miR-193a-5p 12 80
hbv-miR-B4 MIMAT0012171 Herpes B miR-B4 12 80
osa-miR1846c-3p MIMAT0009166 Oryza sativa miR1846c-3p 12 80
osa-miR1846b-3p MIMAT0007791 Oryza sativa miR1846b-3p 12 80
osa-miR1846a-3p MIMAT0007789 Oryza sativa miR1846a-3p 12 80
cfa-miR-193b MIMAT0006699 Canis familiaris miR-193b 12 80
mml-miR-193b-5p MIMAT0026836 Macaca mulatta miR-193b-5p 12 80
gga-miR-1456-3p MIMAT0007334 Gallus gallus miR-1456-3p 12 80
oan-miR-1362-5p MIMAT0007023 Ornithorhynchus anatinus miR-1362-5p 12 80
oan-miR-193-5p MIMAT0006820 Ornithorhynchus anatinus miR-193-5p 12 80
mcmv-miR-m22-1 MIMAT0005541 Mouse cytomegalovirus miR-m22-1 12 80
mmu-miR-193b-5p MIMAT0017271 Mus musculus miR-193b-5p 12 80
gga-miR-193b-5p MIMAT0026629 Gallus gallus miR-193b-5p 12 80
hsa-miR-193b-5p MIMAT0004767 Homo sapiens miR-193b-5p 12 80
>cre-miR1151a-3p MIMAT0005394 Chlamydomonas reinhardtii
miR1151a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggggt 7
|||||||
Sbjct: 1 acggggt 7
>oha-miR-1329-3p MIMAT0036697 Ophiophagus hannah miR-1329-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgggg 6
||||||
Sbjct: 6 acgggg 1
>chi-miR-193b-5p MIMAT0036027 Capra hircus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>efu-miR-193b MIMAT0035100 Eptesicus fuscus miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>stu-miR408b-5p MIMAT0031339 Solanum tuberosum miR408b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgggg 6
||||||
Sbjct: 1 acgggg 6
>hsa-miR-7704 MIMAT0030019 Homo sapiens miR-7704
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>oan-miR-7424-3p MIMAT0028999 Ornithorhynchus anatinus
miR-7424-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgggg 6
||||||
Sbjct: 3 acgggg 8
>mdo-miR-193b-5p MIMAT0028652 Monodelphis domestica miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>mmu-miR-7036a-5p MIMAT0027976 Mus musculus miR-7036a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 3 cggggt 8
>hsa-miR-6777-5p MIMAT0027454 Homo sapiens miR-6777-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgggg 6
||||||
Sbjct: 1 acgggg 6
>ggo-miR-193b MIMAT0024138 Gorilla gorilla miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>cgr-miR-193b-5p MIMAT0023825 Cricetulus griseus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>aca-miR-5404 MIMAT0022017 Anolis carolinensis miR-5404
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgggg 6
||||||
Sbjct: 8 acgggg 3
>aca-miR-425-3p MIMAT0021955 Anolis carolinensis miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgggg 6
||||||
Sbjct: 3 acgggg 8
>bfl-miR-4903 MIMAT0020498 Branchiostoma floridae miR-4903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggggt 7
||||||
Sbjct: 7 cggggt 2
>hsa-miR-4651 MIMAT0019715 Homo sapiens miR-4651
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>pma-miR-4590 MIMAT0019623 Petromyzon marinus miR-4590
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgggg 6
||||||
Sbjct: 1 acgggg 6
>pma-miR-4544-3p MIMAT0019574 Petromyzon marinus miR-4544-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 3 cggggt 8
>tca-miR-3852-5p MIMAT0018760 Tribolium castaneum miR-3852-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgggg 6
||||||
Sbjct: 1 acgggg 6
>cin-miR-4109-5p MIMAT0016696 Ciona intestinalis miR-4109-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggggt 7
||||||
Sbjct: 6 cggggt 1
>tgu-miR-193a-5p MIMAT0027014 Taeniopygia guttata miR-193a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>hbv-miR-B4 MIMAT0012171 Herpes B miR-B4
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgggg 6
||||||
Sbjct: 1 acgggg 6
>osa-miR1846c-3p MIMAT0009166 Oryza sativa miR1846c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggggt 7
||||||
Sbjct: 8 cggggt 3
>osa-miR1846b-3p MIMAT0007791 Oryza sativa miR1846b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggggt 7
||||||
Sbjct: 8 cggggt 3
>osa-miR1846a-3p MIMAT0007789 Oryza sativa miR1846a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggggt 7
||||||
Sbjct: 8 cggggt 3
>cfa-miR-193b MIMAT0006699 Canis familiaris miR-193b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>mml-miR-193b-5p MIMAT0026836 Macaca mulatta miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>gga-miR-1456-3p MIMAT0007334 Gallus gallus miR-1456-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>oan-miR-1362-5p MIMAT0007023 Ornithorhynchus anatinus
miR-1362-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggggt 7
||||||
Sbjct: 7 cggggt 2
>oan-miR-193-5p MIMAT0006820 Ornithorhynchus anatinus miR-193-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>mcmv-miR-m22-1 MIMAT0005541 Mouse cytomegalovirus miR-m22-1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgggg 6
||||||
Sbjct: 8 acgggg 3
>mmu-miR-193b-5p MIMAT0017271 Mus musculus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>gga-miR-193b-5p MIMAT0026629 Gallus gallus miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
>hsa-miR-193b-5p MIMAT0004767 Homo sapiens miR-193b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggt 7
||||||
Sbjct: 1 cggggt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 40
Number of extensions: 39
Number of successful extensions: 34
Number of sequences better than 100.0: 34
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
