BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-12-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9069 MIMAT0034614 Equus caballus miR-9069 14 20
bbe-miR-216-3p MIMAT0031647 Branchiostoma belcheri miR-216-3p 14 20
mml-miR-1250 MIMAT0024334 Macaca mulatta miR-1250 14 20
ggo-miR-1250 MIMAT0024235 Gorilla gorilla miR-1250 14 20
ppy-miR-1250 MIMAT0016175 Pongo pygmaeus miR-1250 14 20
bfl-miR-216-3p MIMAT0019150 Branchiostoma floridae miR-216-3p 14 20
ptr-miR-1250 MIMAT0007976 Pan troglodytes miR-1250 14 20
hsa-miR-1250-5p MIMAT0005902 Homo sapiens miR-1250-5p 14 20
rlcv-miR-rL1-12-3p MIMAT0003442 Rhesus lymphocryptovirus miR-rL1... 14 20
efu-miR-411 MIMAT0035029 Eptesicus fuscus miR-411 12 80
eca-miR-9169 MIMAT0034747 Equus caballus miR-9169 12 80
pxy-miR-8531 MIMAT0033774 Plutella xylostella miR-8531 12 80
ath-miR8180 MIMAT0032779 Arabidopsis thaliana miR8180 12 80
mmu-miR-7676-3p MIMAT0029861 Mus musculus miR-7676-3p 12 80
mmu-miR-7668-3p MIMAT0029843 Mus musculus miR-7668-3p 12 80
gga-miR-7471-5p MIMAT0029096 Gallus gallus miR-7471-5p 12 80
mmu-miR-6959-3p MIMAT0027819 Mus musculus miR-6959-3p 12 80
gga-miR-6551-5p MIMAT0025609 Gallus gallus miR-6551-5p 12 80
asu-miR-5347-3p MIMAT0021545 Ascaris suum miR-5347-3p 12 80
hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p 12 80
tca-miR-3867-3p MIMAT0018827 Tribolium castaneum miR-3867-3p 12 80
tca-miR-3830-5p MIMAT0018690 Tribolium castaneum miR-3830-5p 12 80
ame-miR-3720 MIMAT0018538 Apis mellifera miR-3720 12 80
rno-miR-667-5p MIMAT0017369 Rattus norvegicus miR-667-5p 12 80
dre-miR-2185-5p MIMAT0011289 Danio rerio miR-2185-5p 12 80
gga-miR-1732 MIMAT0007634 Gallus gallus miR-1732 12 80
mmu-miR-667-5p MIMAT0017239 Mus musculus miR-667-5p 12 80
rlcv-miR-rL1-6-3p MIMAT0003435 Rhesus lymphocryptovirus miR-rL1-... 12 80
ebv-miR-BART1-3p MIMAT0003390 Epstein Barr miR-BART1-3p 12 80
>eca-miR-9069 MIMAT0034614 Equus caballus miR-9069
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggtgc 7
|||||||
Sbjct: 2 acggtgc 8
>bbe-miR-216-3p MIMAT0031647 Branchiostoma belcheri miR-216-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggtgc 7
|||||||
Sbjct: 2 acggtgc 8
>mml-miR-1250 MIMAT0024334 Macaca mulatta miR-1250
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggtgc 7
|||||||
Sbjct: 1 acggtgc 7
>ggo-miR-1250 MIMAT0024235 Gorilla gorilla miR-1250
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggtgc 7
|||||||
Sbjct: 1 acggtgc 7
>ppy-miR-1250 MIMAT0016175 Pongo pygmaeus miR-1250
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggtgc 7
|||||||
Sbjct: 1 acggtgc 7
>bfl-miR-216-3p MIMAT0019150 Branchiostoma floridae miR-216-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggtgc 7
|||||||
Sbjct: 2 acggtgc 8
>ptr-miR-1250 MIMAT0007976 Pan troglodytes miR-1250
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggtgc 7
|||||||
Sbjct: 1 acggtgc 7
>hsa-miR-1250-5p MIMAT0005902 Homo sapiens miR-1250-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggtgc 7
|||||||
Sbjct: 1 acggtgc 7
>rlcv-miR-rL1-12-3p MIMAT0003442 Rhesus lymphocryptovirus
miR-rL1-12-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acggtgc 7
|||||||
Sbjct: 2 acggtgc 8
>efu-miR-411 MIMAT0035029 Eptesicus fuscus miR-411
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggtg 6
||||||
Sbjct: 1 acggtg 6
>eca-miR-9169 MIMAT0034747 Equus caballus miR-9169
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggtg 6
||||||
Sbjct: 3 acggtg 8
>pxy-miR-8531 MIMAT0033774 Plutella xylostella miR-8531
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 1 cggtgc 6
>ath-miR8180 MIMAT0032779 Arabidopsis thaliana miR8180
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 3 cggtgc 8
>mmu-miR-7676-3p MIMAT0029861 Mus musculus miR-7676-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 3 cggtgc 8
>mmu-miR-7668-3p MIMAT0029843 Mus musculus miR-7668-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 1 cggtgc 6
>gga-miR-7471-5p MIMAT0029096 Gallus gallus miR-7471-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 3 cggtgc 8
>mmu-miR-6959-3p MIMAT0027819 Mus musculus miR-6959-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggtgc 7
||||||
Sbjct: 8 cggtgc 3
>gga-miR-6551-5p MIMAT0025609 Gallus gallus miR-6551-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 1 cggtgc 6
>asu-miR-5347-3p MIMAT0021545 Ascaris suum miR-5347-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggtg 6
||||||
Sbjct: 3 acggtg 8
>hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 3 cggtgc 8
>tca-miR-3867-3p MIMAT0018827 Tribolium castaneum miR-3867-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggtg 6
||||||
Sbjct: 8 acggtg 3
>tca-miR-3830-5p MIMAT0018690 Tribolium castaneum miR-3830-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 3 cggtgc 8
>ame-miR-3720 MIMAT0018538 Apis mellifera miR-3720
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acggtg 6
||||||
Sbjct: 3 acggtg 8
>rno-miR-667-5p MIMAT0017369 Rattus norvegicus miR-667-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 1 cggtgc 6
>dre-miR-2185-5p MIMAT0011289 Danio rerio miR-2185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 1 cggtgc 6
>gga-miR-1732 MIMAT0007634 Gallus gallus miR-1732
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acggtg 6
||||||
Sbjct: 6 acggtg 1
>mmu-miR-667-5p MIMAT0017239 Mus musculus miR-667-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggtgc 7
||||||
Sbjct: 1 cggtgc 6
>rlcv-miR-rL1-6-3p MIMAT0003435 Rhesus lymphocryptovirus
miR-rL1-6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggtgc 7
||||||
Sbjct: 8 cggtgc 3
>ebv-miR-BART1-3p MIMAT0003390 Epstein Barr miR-BART1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggtgc 7
||||||
Sbjct: 8 cggtgc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 50
Number of extensions: 41
Number of successful extensions: 29
Number of sequences better than 100.0: 29
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 29
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
