BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b7
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ata-miR166c-5p MIMAT0037248 Aegilops tauschii miR166c-5p               14      20
bhv1-miR-B7 MIMAT0013969 Bovine herpesvirus miR-B7                     14      20
tae-miR1137b-5p MIMAT0035774 Triticum aestivum miR1137b-5p             12      80
rno-miR-1247-3p MIMAT0035722 Rattus norvegicus miR-1247-3p             12      80
gra-miR8736 MIMAT0034148 Gossypium raimondii miR8736                   12      80
sma-miR-8474-3p MIMAT0033670 Schistosoma mansoni miR-8474-3p           12      80
bdi-miR7734-5p MIMAT0030202 Brachypodium distachyon miR7734-5p         12      80
mml-miR-1247-3p MIMAT0028359 Macaca mulatta miR-1247-3p                12      80
mmu-miR-7058-3p MIMAT0028021 Mus musculus miR-7058-3p                  12      80
bta-miR-1247-3p MIMAT0025550 Bos taurus miR-1247-3p                    12      80
ame-miR-6042 MIMAT0023664 Apis mellifera miR-6042                      12      80
gma-miR1520j MIMAT0018263 Glycine max miR1520j                         12      80
cin-miR-4181-3p MIMAT0016795 Ciona intestinalis miR-4181-3p            12      80
cin-miR-4019-3p MIMAT0016527 Ciona intestinalis miR-4019-3p            12      80
api-miR-3051 MIMAT0014792 Acyrthosiphon pisum miR-3051                 12      80
osa-miR1320-5p MIMAT0009137 Oryza sativa miR1320-5p                    12      80
ptr-miR-1292 MIMAT0008011 Pan troglodytes miR-1292                     12      80
hsa-miR-1292-5p MIMAT0005943 Homo sapiens miR-1292-5p                  12      80
mmu-miR-1247-3p MIMAT0014801 Mus musculus miR-1247-3p                  12      80
dme-miR-6-3-5p MIMAT0020789 Drosophila melanogaster miR-6-3-5p         12      80
>ata-miR166c-5p MIMAT0037248 Aegilops tauschii miR166c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 acgttcc 7
         |||||||
Sbjct: 7 acgttcc 1
>bhv1-miR-B7 MIMAT0013969 Bovine herpesvirus miR-B7
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 acgttcc 7
         |||||||
Sbjct: 2 acgttcc 8
>tae-miR1137b-5p MIMAT0035774 Triticum aestivum miR1137b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 3 cgttcc 8
>rno-miR-1247-3p MIMAT0035722 Rattus norvegicus miR-1247-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 8 cgttcc 3
>gra-miR8736 MIMAT0034148 Gossypium raimondii miR8736
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 8 cgttcc 3
>sma-miR-8474-3p MIMAT0033670 Schistosoma mansoni miR-8474-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acgttc 6
         ||||||
Sbjct: 6 acgttc 1
>bdi-miR7734-5p MIMAT0030202 Brachypodium distachyon miR7734-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acgttc 6
         ||||||
Sbjct: 8 acgttc 3
>mml-miR-1247-3p MIMAT0028359 Macaca mulatta miR-1247-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 8 cgttcc 3
>mmu-miR-7058-3p MIMAT0028021 Mus musculus miR-7058-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 3 cgttcc 8
>bta-miR-1247-3p MIMAT0025550 Bos taurus miR-1247-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 8 cgttcc 3
>ame-miR-6042 MIMAT0023664 Apis mellifera miR-6042
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 8 cgttcc 3
>gma-miR1520j MIMAT0018263 Glycine max miR1520j
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acgttc 6
         ||||||
Sbjct: 8 acgttc 3
>cin-miR-4181-3p MIMAT0016795 Ciona intestinalis miR-4181-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 acgttc 6
         ||||||
Sbjct: 6 acgttc 1
>cin-miR-4019-3p MIMAT0016527 Ciona intestinalis miR-4019-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 3 cgttcc 8
>api-miR-3051 MIMAT0014792 Acyrthosiphon pisum miR-3051
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 8 cgttcc 3
>osa-miR1320-5p MIMAT0009137 Oryza sativa miR1320-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 7 cgttcc 2
>ptr-miR-1292 MIMAT0008011 Pan troglodytes miR-1292
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 8 cgttcc 3
>hsa-miR-1292-5p MIMAT0005943 Homo sapiens miR-1292-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 8 cgttcc 3
>mmu-miR-1247-3p MIMAT0014801 Mus musculus miR-1247-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 8 cgttcc 3
>dme-miR-6-3-5p MIMAT0020789 Drosophila melanogaster miR-6-3-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgttcc 7
         ||||||
Sbjct: 8 cgttcc 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 27
Number of extensions: 25
Number of successful extensions: 20
Number of sequences better than 100.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)