BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s8
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
osa-miR812q MIMAT0023255 Oryza sativa miR812q 16 6.9
tch-miR-1306-3p MIMAT0036497 Tupaia chinensis miR-1306-3p 14 27
chi-miR-1306-3p MIMAT0035940 Capra hircus miR-1306-3p 14 27
mdo-miR-7253-3p MIMAT0028473 Monodelphis domestica miR-7253-3p 14 27
mml-miR-1306-3p MIMAT0028241 Macaca mulatta miR-1306-3p 14 27
rno-miR-1306-3p MIMAT0024852 Rattus norvegicus miR-1306-3p 14 27
ggo-miR-1306 MIMAT0024225 Gorilla gorilla miR-1306 14 27
cgr-miR-1306-3p MIMAT0023753 Cricetulus griseus miR-1306-3p 14 27
asu-miR-5346-3p MIMAT0021541 Ascaris suum miR-5346-3p 14 27
cin-miR-375-5p MIMAT0016417 Ciona intestinalis miR-375-5p 14 27
ppy-miR-1306 MIMAT0016226 Pongo pygmaeus miR-1306 14 27
bmo-miR-3235 MIMAT0015418 Bombyx mori miR-3235 14 27
ssc-miR-1306-3p MIMAT0013938 Sus scrofa miR-1306-3p 14 27
cte-miR-2712 MIMAT0013581 Capitella teleta miR-2712 14 27
mmu-miR-1306-3p MIMAT0009411 Mus musculus miR-1306-3p 14 27
ptr-miR-1306 MIMAT0008023 Pan troglodytes miR-1306 14 27
xla-miR-1306 MIMAT0011136 Xenopus laevis miR-1306 14 27
hsa-miR-1306-3p MIMAT0005950 Homo sapiens miR-1306-3p 14 27
cre-miR1148.1 MIMAT0005386 Chlamydomonas reinhardtii miR1148.1 14 27
>osa-miR812q MIMAT0023255 Oryza sativa miR812q
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 acgttggg 8
||||||||
Sbjct: 1 acgttggg 8
>tch-miR-1306-3p MIMAT0036497 Tupaia chinensis miR-1306-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>chi-miR-1306-3p MIMAT0035940 Capra hircus miR-1306-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>mdo-miR-7253-3p MIMAT0028473 Monodelphis domestica miR-7253-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgttggg 8
|||||||
Sbjct: 1 cgttggg 7
>mml-miR-1306-3p MIMAT0028241 Macaca mulatta miR-1306-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>rno-miR-1306-3p MIMAT0024852 Rattus norvegicus miR-1306-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 2 acgttgg 8
>ggo-miR-1306 MIMAT0024225 Gorilla gorilla miR-1306
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>cgr-miR-1306-3p MIMAT0023753 Cricetulus griseus miR-1306-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>asu-miR-5346-3p MIMAT0021541 Ascaris suum miR-5346-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgttggg 8
|||||||
Sbjct: 2 cgttggg 8
>cin-miR-375-5p MIMAT0016417 Ciona intestinalis miR-375-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>ppy-miR-1306 MIMAT0016226 Pongo pygmaeus miR-1306
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>bmo-miR-3235 MIMAT0015418 Bombyx mori miR-3235
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgttgg 7
|||||||
Sbjct: 8 acgttgg 2
>ssc-miR-1306-3p MIMAT0013938 Sus scrofa miR-1306-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>cte-miR-2712 MIMAT0013581 Capitella teleta miR-2712
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 2 acgttgg 8
>mmu-miR-1306-3p MIMAT0009411 Mus musculus miR-1306-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>ptr-miR-1306 MIMAT0008023 Pan troglodytes miR-1306
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>xla-miR-1306 MIMAT0011136 Xenopus laevis miR-1306
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>hsa-miR-1306-3p MIMAT0005950 Homo sapiens miR-1306-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgg 7
|||||||
Sbjct: 1 acgttgg 7
>cre-miR1148.1 MIMAT0005386 Chlamydomonas reinhardtii miR1148.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgttgg 7
|||||||
Sbjct: 7 acgttgg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 108
Number of extensions: 88
Number of successful extensions: 68
Number of sequences better than 100.0: 19
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
