BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r111.2-5
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gma-miR4401a MIMAT0018319 Glycine max miR4401a 14 20
bta-miR-2481 MIMAT0012073 Bos taurus miR-2481 14 20
tch-miR-1306-3p MIMAT0036497 Tupaia chinensis miR-1306-3p 12 80
chi-miR-1306-3p MIMAT0035940 Capra hircus miR-1306-3p 12 80
dvi-miR-981-3p MIMAT0035598 Drosophila virilis miR-981-3p 12 80
gsa-miR-9391-3p MIMAT0035327 Gyrodactylus salaris miR-9391-3p 12 80
gsa-miR-76a-3p MIMAT0035287 Gyrodactylus salaris miR-76a-3p 12 80
atr-miR535 MIMAT0033947 Amborella trichopoda miR535 12 80
sma-miR-8474-3p MIMAT0033670 Schistosoma mansoni miR-8474-3p 12 80
sma-miR-8404-5p MIMAT0033508 Schistosoma mansoni miR-8404-5p 12 80
str-miR-76-3p MIMAT0033415 Strongyloides ratti miR-76-3p 12 80
ppc-miR-76-3p MIMAT0033088 Pristionchus pacificus miR-76-3p 12 80
ssa-miR-8162-3p MIMAT0032756 Salmo salar miR-8162-3p 12 80
ssa-miR-375-3-5p MIMAT0032628 Salmo salar miR-375-3-5p 12 80
ssa-miR-375-5p MIMAT0032625 Salmo salar miR-375-5p 12 80
ssa-miR-21a-3p MIMAT0032534 Salmo salar miR-21a-3p 12 80
cpa-miR535 MIMAT0031824 Carica papaya miR535 12 80
ppe-miR858 MIMAT0031567 Prunus persica miR858 12 80
ppe-miR535a MIMAT0031514 Prunus persica miR535a 12 80
prd-miR-76-3p MIMAT0030819 Panagrellus redivivus miR-76-3p 12 80
prd-miR-7871-3p MIMAT0030487 Panagrellus redivivus miR-7871-3p 12 80
lva-miR-981-3p MIMAT0032221 Lytechinus variegatus miR-981-3p 12 80
pmi-miR-981-3p MIMAT0032174 Patiria miniata miR-981-3p 12 80
cbn-miR-76 MIMAT0029777 Caenorhabditis brenneri miR-76 12 80
mes-miR535b MIMAT0029301 Manihot esculenta miR535b 12 80
mes-miR535a MIMAT0029300 Manihot esculenta miR535a 12 80
mdo-miR-7262a-3p MIMAT0028491 Monodelphis domestica miR-7262a-3p 12 80
mml-miR-1306-3p MIMAT0028241 Macaca mulatta miR-1306-3p 12 80
mdm-miR858 MIMAT0026070 Malus domestica miR858 12 80
mdm-miR535a MIMAT0026024 Malus domestica miR535a 12 80
hme-miR-981 MIMAT0024999 Heliconius melpomene miR-981 12 80
gma-miR6300 MIMAT0024929 Glycine max miR6300 12 80
mse-miR-981 MIMAT0024433 Manduca sexta miR-981 12 80
ggo-miR-1306 MIMAT0024225 Gorilla gorilla miR-1306 12 80
cgr-miR-1306-3p MIMAT0023753 Cricetulus griseus miR-1306-3p 12 80
hco-miR-76 MIMAT0023496 Haemonchus contortus miR-76 12 80
osa-miR812q MIMAT0023255 Oryza sativa miR812q 12 80
ath-miR858b MIMAT0022417 Arabidopsis thaliana miR858b 12 80
aca-miR-5410-5p MIMAT0022027 Anolis carolinensis miR-5410-5p 12 80
asu-miR-76-3p MIMAT0021471 Ascaris suum miR-76-3p 12 80
spu-miR-981 MIMAT0020068 Strongylocentrotus purpuratus miR-981 12 80
tcc-miR535 MIMAT0020448 Theobroma cacao miR535 12 80
pma-miR-4594 MIMAT0019627 Petromyzon marinus miR-4594 12 80
ame-miR-3730 MIMAT0018598 Apis mellifera miR-3730 12 80
pab-miR535 MIMAT0018159 Picea abies miR535 12 80
cin-miR-4074-3p MIMAT0016637 Ciona intestinalis miR-4074-3p 12 80
cin-miR-4000c-3p MIMAT0016427 Ciona intestinalis miR-4000c-3p 12 80
cin-miR-375-5p MIMAT0016417 Ciona intestinalis miR-375-5p 12 80
ppy-miR-1306 MIMAT0016226 Pongo pygmaeus miR-1306 12 80
aly-miR3436-3p MIMAT0017704 Arabidopsis lyrata miR3436-3p 12 80
bmo-miR-3351 MIMAT0015536 Bombyx mori miR-3351 12 80
bmo-miR-3235 MIMAT0015418 Bombyx mori miR-3235 12 80
api-miR-981 MIMAT0014736 Acyrthosiphon pisum miR-981 12 80
cqu-miR-981 MIMAT0014386 Culex quinquefasciatus miR-981 12 80
aae-miR-981 MIMAT0014267 Aedes aegypti miR-981 12 80
rco-miR535 MIMAT0014205 Ricinus communis miR535 12 80
ssc-miR-1306-3p MIMAT0013938 Sus scrofa miR-1306-3p 12 80
dpu-miR-981 MIMAT0012675 Daphnia pulex miR-981 12 80
aqc-miR535 MIMAT0012594 Aquilegia caerulea miR535 12 80
dsi-miR-981-3p MIMAT0012486 Drosophila simulans miR-981-3p 12 80
dps-miR-981-3p MIMAT0012220 Drosophila pseudoobscura miR-981-3p 12 80
crm-miR-76 MIMAT0011525 Caenorhabditis remanei miR-76 12 80
cbr-miR-76 MIMAT0011466 Caenorhabditis briggsae miR-76 12 80
sme-miR-76-3p MIMAT0011397 Schmidtea mediterranea miR-76-3p 12 80
ame-miR-981 MIMAT0010121 Apis mellifera miR-981 12 80
tca-miR-981 MIMAT0010098 Tribolium castaneum miR-981 12 80
lgi-miR-981 MIMAT0009601 Lottia gigantea miR-981 12 80
cte-miR-981 MIMAT0009548 Capitella teleta miR-981 12 80
mmu-miR-1306-3p MIMAT0009411 Mus musculus miR-1306-3p 12 80
ptr-miR-1306 MIMAT0008023 Pan troglodytes miR-1306 12 80
xla-miR-1306 MIMAT0011136 Xenopus laevis miR-1306 12 80
aga-miR-981 MIMAT0007857 Anopheles gambiae miR-981 12 80
vvi-miR535c MIMAT0005738 Vitis vinifera miR535c 12 80
vvi-miR535b MIMAT0005736 Vitis vinifera miR535b 12 80
vvi-miR535a MIMAT0005735 Vitis vinifera miR535a 12 80
hsa-miR-1306-3p MIMAT0005950 Homo sapiens miR-1306-3p 12 80
dme-miR-981-3p MIMAT0005497 Drosophila melanogaster miR-981-3p 12 80
ppt-miR535d MIMAT0003915 Physcomitrella patens miR535d 12 80
osa-miR535-5p MIMAT0003142 Oryza sativa miR535-5p 12 80
ppt-miR535c MIMAT0003141 Physcomitrella patens miR535c 12 80
ppt-miR535b MIMAT0003140 Physcomitrella patens miR535b 12 80
ppt-miR535a MIMAT0003139 Physcomitrella patens miR535a 12 80
cel-miR-76-3p MIMAT0000048 Caenorhabditis elegans miR-76-3p 12 80
>gma-miR4401a MIMAT0018319 Glycine max miR4401a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acgttgt 7
|||||||
Sbjct: 7 acgttgt 1
>bta-miR-2481 MIMAT0012073 Bos taurus miR-2481
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acgttgt 7
|||||||
Sbjct: 2 acgttgt 8
>tch-miR-1306-3p MIMAT0036497 Tupaia chinensis miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>chi-miR-1306-3p MIMAT0035940 Capra hircus miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>dvi-miR-981-3p MIMAT0035598 Drosophila virilis miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>gsa-miR-9391-3p MIMAT0035327 Gyrodactylus salaris miR-9391-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>gsa-miR-76a-3p MIMAT0035287 Gyrodactylus salaris miR-76a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>atr-miR535 MIMAT0033947 Amborella trichopoda miR535
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>sma-miR-8474-3p MIMAT0033670 Schistosoma mansoni miR-8474-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 3 acgttg 8
>sma-miR-8404-5p MIMAT0033508 Schistosoma mansoni miR-8404-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 3 acgttg 8
>str-miR-76-3p MIMAT0033415 Strongyloides ratti miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>ppc-miR-76-3p MIMAT0033088 Pristionchus pacificus miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>ssa-miR-8162-3p MIMAT0032756 Salmo salar miR-8162-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>ssa-miR-375-3-5p MIMAT0032628 Salmo salar miR-375-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>ssa-miR-375-5p MIMAT0032625 Salmo salar miR-375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>ssa-miR-21a-3p MIMAT0032534 Salmo salar miR-21a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>cpa-miR535 MIMAT0031824 Carica papaya miR535
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>ppe-miR858 MIMAT0031567 Prunus persica miR858
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>ppe-miR535a MIMAT0031514 Prunus persica miR535a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>prd-miR-76-3p MIMAT0030819 Panagrellus redivivus miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>prd-miR-7871-3p MIMAT0030487 Panagrellus redivivus miR-7871-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 3 acgttg 8
>lva-miR-981-3p MIMAT0032221 Lytechinus variegatus miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>pmi-miR-981-3p MIMAT0032174 Patiria miniata miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>cbn-miR-76 MIMAT0029777 Caenorhabditis brenneri miR-76
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>mes-miR535b MIMAT0029301 Manihot esculenta miR535b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>mes-miR535a MIMAT0029300 Manihot esculenta miR535a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>mdo-miR-7262a-3p MIMAT0028491 Monodelphis domestica
miR-7262a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 7 cgttgt 2
>mml-miR-1306-3p MIMAT0028241 Macaca mulatta miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>mdm-miR858 MIMAT0026070 Malus domestica miR858
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>mdm-miR535a MIMAT0026024 Malus domestica miR535a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>hme-miR-981 MIMAT0024999 Heliconius melpomene miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>gma-miR6300 MIMAT0024929 Glycine max miR6300
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>mse-miR-981 MIMAT0024433 Manduca sexta miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>ggo-miR-1306 MIMAT0024225 Gorilla gorilla miR-1306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>cgr-miR-1306-3p MIMAT0023753 Cricetulus griseus miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>hco-miR-76 MIMAT0023496 Haemonchus contortus miR-76
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>osa-miR812q MIMAT0023255 Oryza sativa miR812q
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>ath-miR858b MIMAT0022417 Arabidopsis thaliana miR858b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>aca-miR-5410-5p MIMAT0022027 Anolis carolinensis miR-5410-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 1 cgttgt 6
>asu-miR-76-3p MIMAT0021471 Ascaris suum miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>spu-miR-981 MIMAT0020068 Strongylocentrotus purpuratus miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>tcc-miR535 MIMAT0020448 Theobroma cacao miR535
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>pma-miR-4594 MIMAT0019627 Petromyzon marinus miR-4594
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgttg 6
||||||
Sbjct: 6 acgttg 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 3 acgttg 8
>ame-miR-3730 MIMAT0018598 Apis mellifera miR-3730
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 6 cgttgt 1
>pab-miR535 MIMAT0018159 Picea abies miR535
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>cin-miR-4074-3p MIMAT0016637 Ciona intestinalis miR-4074-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgttg 6
||||||
Sbjct: 6 acgttg 1
>cin-miR-4000c-3p MIMAT0016427 Ciona intestinalis miR-4000c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>cin-miR-375-5p MIMAT0016417 Ciona intestinalis miR-375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>ppy-miR-1306 MIMAT0016226 Pongo pygmaeus miR-1306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>aly-miR3436-3p MIMAT0017704 Arabidopsis lyrata miR3436-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>bmo-miR-3351 MIMAT0015536 Bombyx mori miR-3351
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 3 acgttg 8
>bmo-miR-3235 MIMAT0015418 Bombyx mori miR-3235
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acgttg 6
||||||
Sbjct: 8 acgttg 3
>api-miR-981 MIMAT0014736 Acyrthosiphon pisum miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>cqu-miR-981 MIMAT0014386 Culex quinquefasciatus miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>aae-miR-981 MIMAT0014267 Aedes aegypti miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>rco-miR535 MIMAT0014205 Ricinus communis miR535
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>ssc-miR-1306-3p MIMAT0013938 Sus scrofa miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>dpu-miR-981 MIMAT0012675 Daphnia pulex miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>aqc-miR535 MIMAT0012594 Aquilegia caerulea miR535
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>dsi-miR-981-3p MIMAT0012486 Drosophila simulans miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>dps-miR-981-3p MIMAT0012220 Drosophila pseudoobscura miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>crm-miR-76 MIMAT0011525 Caenorhabditis remanei miR-76
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>cbr-miR-76 MIMAT0011466 Caenorhabditis briggsae miR-76
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>sme-miR-76-3p MIMAT0011397 Schmidtea mediterranea miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>ame-miR-981 MIMAT0010121 Apis mellifera miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>tca-miR-981 MIMAT0010098 Tribolium castaneum miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>lgi-miR-981 MIMAT0009601 Lottia gigantea miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>cte-miR-981 MIMAT0009548 Capitella teleta miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>mmu-miR-1306-3p MIMAT0009411 Mus musculus miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>ptr-miR-1306 MIMAT0008023 Pan troglodytes miR-1306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>xla-miR-1306 MIMAT0011136 Xenopus laevis miR-1306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>aga-miR-981 MIMAT0007857 Anopheles gambiae miR-981
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>vvi-miR535c MIMAT0005738 Vitis vinifera miR535c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>vvi-miR535b MIMAT0005736 Vitis vinifera miR535b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>vvi-miR535a MIMAT0005735 Vitis vinifera miR535a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>hsa-miR-1306-3p MIMAT0005950 Homo sapiens miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acgttg 6
||||||
Sbjct: 1 acgttg 6
>dme-miR-981-3p MIMAT0005497 Drosophila melanogaster miR-981-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
>ppt-miR535d MIMAT0003915 Physcomitrella patens miR535d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>osa-miR535-5p MIMAT0003142 Oryza sativa miR535-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>ppt-miR535c MIMAT0003141 Physcomitrella patens miR535c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>ppt-miR535b MIMAT0003140 Physcomitrella patens miR535b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>ppt-miR535a MIMAT0003139 Physcomitrella patens miR535a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgt 7
||||||
Sbjct: 8 cgttgt 3
>cel-miR-76-3p MIMAT0000048 Caenorhabditis elegans miR-76-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgt 7
||||||
Sbjct: 3 cgttgt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 94
Number of extensions: 92
Number of successful extensions: 84
Number of sequences better than 100.0: 83
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 84
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
