BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r91-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-2a-5p MIMAT0035266 Gyrodactylus salaris miR-2a-5p 14 20
mdo-miR-7386f-5p MIMAT0028856 Monodelphis domestica miR-7386f-5p 14 20
chi-miR-1307-3p MIMAT0035942 Capra hircus miR-1307-3p 12 80
dme-miR-9375-5p MIMAT0035213 Drosophila melanogaster miR-9375-5p 12 80
efu-miR-9368 MIMAT0035195 Eptesicus fuscus miR-9368 12 80
eca-miR-9063 MIMAT0034608 Equus caballus miR-9063 12 80
eca-miR-1307 MIMAT0034589 Equus caballus miR-1307 12 80
eca-miR-9026 MIMAT0034568 Equus caballus miR-9026 12 80
cfa-miR-8882 MIMAT0034384 Canis familiaris miR-8882 12 80
ppc-miR-8348-5p MIMAT0033244 Pristionchus pacificus miR-8348-5p 12 80
ppc-miR-8320-5p MIMAT0033180 Pristionchus pacificus miR-8320-5p 12 80
bdi-miR7762-3p MIMAT0030271 Brachypodium distachyon miR7762-3p 12 80
bdi-miR7728-5p MIMAT0030188 Brachypodium distachyon miR7728-5p 12 80
mtr-miR7697-5p MIMAT0029994 Medicago truncatula miR7697-5p 12 80
ipu-miR-7577 MIMAT0029576 Ictalurus punctatus miR-7577 12 80
bta-miR-3957 MIMAT0025548 Bos taurus miR-3957 12 80
cca-miR6118-3p MIMAT0024566 Cynara cardunculus miR6118-3p 12 80
cgr-miR-615-3p MIMAT0023988 Cricetulus griseus miR-615-3p 12 80
bdi-miR166e-3p MIMAT0020687 Brachypodium distachyon miR166e-3p 12 80
ssc-miR-615 MIMAT0020595 Sus scrofa miR-615 12 80
hsa-miR-4638-5p MIMAT0019695 Homo sapiens miR-4638-5p 12 80
oar-miR-3957-5p MIMAT0019325 Ovis aries miR-3957-5p 12 80
ppy-miR-1307 MIMAT0016227 Pongo pygmaeus miR-1307 12 80
ppy-miR-615-3p MIMAT0016057 Pongo pygmaeus miR-615-3p 12 80
aly-miR3446-5p MIMAT0017727 Arabidopsis lyrata miR3446-5p 12 80
tgu-miR-1729-3p MIMAT0026963 Taeniopygia guttata miR-1729-3p 12 80
hsv2-miR-H9-5p MIMAT0015376 Herpes Simplex miR-H9-5p 12 80
bhv1-miR-B5 MIMAT0013966 Bovine herpesvirus miR-B5 12 80
ssc-miR-1307 MIMAT0013936 Sus scrofa miR-1307 12 80
bta-miR-2901 MIMAT0013859 Bos taurus miR-2901 12 80
eca-miR-615-3p MIMAT0012977 Equus caballus miR-615-3p 12 80
bmo-miR-2784 MIMAT0013680 Bombyx mori miR-2784 12 80
bta-miR-1307 MIMAT0009969 Bos taurus miR-1307 12 80
ptr-miR-615 MIMAT0008277 Pan troglodytes miR-615 12 80
ptr-miR-1307 MIMAT0008024 Pan troglodytes miR-1307 12 80
cfa-miR-1307 MIMAT0006665 Canis familiaris miR-1307 12 80
mml-miR-615-3p MIMAT0006466 Macaca mulatta miR-615-3p 12 80
gga-miR-1729-3p MIMAT0007630 Gallus gallus miR-1729-3p 12 80
gga-miR-1713 MIMAT0007609 Gallus gallus miR-1713 12 80
hsa-miR-1307-3p MIMAT0005951 Homo sapiens miR-1307-3p 12 80
mmu-miR-1188-3p MIMAT0017328 Mus musculus miR-1188-3p 12 80
mmu-miR-615-3p MIMAT0003783 Mus musculus miR-615-3p 12 80
hsa-miR-615-3p MIMAT0003283 Homo sapiens miR-615-3p 12 80
>gsa-miR-2a-5p MIMAT0035266 Gyrodactylus salaris miR-2a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 actcgga 7
|||||||
Sbjct: 8 actcgga 2
>mdo-miR-7386f-5p MIMAT0028856 Monodelphis domestica
miR-7386f-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 actcgga 7
|||||||
Sbjct: 1 actcgga 7
>chi-miR-1307-3p MIMAT0035942 Capra hircus miR-1307-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 1 actcgg 6
>dme-miR-9375-5p MIMAT0035213 Drosophila melanogaster
miR-9375-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 actcgg 6
||||||
Sbjct: 6 actcgg 1
>efu-miR-9368 MIMAT0035195 Eptesicus fuscus miR-9368
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>eca-miR-9063 MIMAT0034608 Equus caballus miR-9063
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>eca-miR-1307 MIMAT0034589 Equus caballus miR-1307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 1 actcgg 6
>eca-miR-9026 MIMAT0034568 Equus caballus miR-9026
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 8 ctcgga 3
>cfa-miR-8882 MIMAT0034384 Canis familiaris miR-8882
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>ppc-miR-8348-5p MIMAT0033244 Pristionchus pacificus miR-8348-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 8 ctcgga 3
>ppc-miR-8320-5p MIMAT0033180 Pristionchus pacificus miR-8320-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 8 ctcgga 3
>bdi-miR7762-3p MIMAT0030271 Brachypodium distachyon miR7762-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcgga 7
||||||
Sbjct: 1 ctcgga 6
>bdi-miR7728-5p MIMAT0030188 Brachypodium distachyon miR7728-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcgga 7
||||||
Sbjct: 3 ctcgga 8
>mtr-miR7697-5p MIMAT0029994 Medicago truncatula miR7697-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>ipu-miR-7577 MIMAT0029576 Ictalurus punctatus miR-7577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcgga 7
||||||
Sbjct: 1 ctcgga 6
>bta-miR-3957 MIMAT0025548 Bos taurus miR-3957
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcgga 7
||||||
Sbjct: 1 ctcgga 6
>cca-miR6118-3p MIMAT0024566 Cynara cardunculus miR6118-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 7 ctcgga 2
>cgr-miR-615-3p MIMAT0023988 Cricetulus griseus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>bdi-miR166e-3p MIMAT0020687 Brachypodium distachyon miR166e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcgga 7
||||||
Sbjct: 1 ctcgga 6
>ssc-miR-615 MIMAT0020595 Sus scrofa miR-615
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>hsa-miR-4638-5p MIMAT0019695 Homo sapiens miR-4638-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 1 actcgg 6
>oar-miR-3957-5p MIMAT0019325 Ovis aries miR-3957-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcgga 7
||||||
Sbjct: 1 ctcgga 6
>ppy-miR-1307 MIMAT0016227 Pongo pygmaeus miR-1307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 1 actcgg 6
>ppy-miR-615-3p MIMAT0016057 Pongo pygmaeus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>aly-miR3446-5p MIMAT0017727 Arabidopsis lyrata miR3446-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcgga 7
||||||
Sbjct: 1 ctcgga 6
>tgu-miR-1729-3p MIMAT0026963 Taeniopygia guttata miR-1729-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 3 actcgg 8
>hsv2-miR-H9-5p MIMAT0015376 Herpes Simplex miR-H9-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcgga 7
||||||
Sbjct: 1 ctcgga 6
>bhv1-miR-B5 MIMAT0013966 Bovine herpesvirus miR-B5
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcgga 7
||||||
Sbjct: 1 ctcgga 6
>ssc-miR-1307 MIMAT0013936 Sus scrofa miR-1307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 1 actcgg 6
>bta-miR-2901 MIMAT0013859 Bos taurus miR-2901
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 actcgg 6
||||||
Sbjct: 6 actcgg 1
>eca-miR-615-3p MIMAT0012977 Equus caballus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>bmo-miR-2784 MIMAT0013680 Bombyx mori miR-2784
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 1 actcgg 6
>bta-miR-1307 MIMAT0009969 Bos taurus miR-1307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 1 actcgg 6
>ptr-miR-615 MIMAT0008277 Pan troglodytes miR-615
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>ptr-miR-1307 MIMAT0008024 Pan troglodytes miR-1307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 1 actcgg 6
>cfa-miR-1307 MIMAT0006665 Canis familiaris miR-1307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 1 actcgg 6
>mml-miR-615-3p MIMAT0006466 Macaca mulatta miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>gga-miR-1729-3p MIMAT0007630 Gallus gallus miR-1729-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 3 actcgg 8
>gga-miR-1713 MIMAT0007609 Gallus gallus miR-1713
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcgga 7
||||||
Sbjct: 1 ctcgga 6
>hsa-miR-1307-3p MIMAT0005951 Homo sapiens miR-1307-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 actcgg 6
||||||
Sbjct: 1 actcgg 6
>mmu-miR-1188-3p MIMAT0017328 Mus musculus miR-1188-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>mmu-miR-615-3p MIMAT0003783 Mus musculus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
>hsa-miR-615-3p MIMAT0003283 Homo sapiens miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcgga 7
||||||
Sbjct: 6 ctcgga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 59
Number of extensions: 57
Number of successful extensions: 43
Number of sequences better than 100.0: 43
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 43
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
