BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR23
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9365 MIMAT0035182 Eptesicus fuscus miR-9365 14 27
pgi-miR6135g MIMAT0027248 Panax ginseng miR6135g 14 27
pgi-miR6135f MIMAT0027247 Panax ginseng miR6135f 14 27
cin-miR-1502d-3p MIMAT0016494 Ciona intestinalis miR-1502d-3p 14 27
bmo-miR-3406-5p MIMAT0015611 Bombyx mori miR-3406-5p 14 27
lgi-miR-1990 MIMAT0009732 Lottia gigantea miR-1990 14 27
hru-miR-1990 MIMAT0009718 Haliotis rufescens miR-1990 14 27
oan-miR-1377 MIMAT0007107 Ornithorhynchus anatinus miR-1377 14 27
>efu-miR-9365 MIMAT0035182 Eptesicus fuscus miR-9365
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttactt 8
|||||||
Sbjct: 1 cttactt 7
>pgi-miR6135g MIMAT0027248 Panax ginseng miR6135g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttact 7
|||||||
Sbjct: 8 acttact 2
>pgi-miR6135f MIMAT0027247 Panax ginseng miR6135f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttact 7
|||||||
Sbjct: 8 acttact 2
>cin-miR-1502d-3p MIMAT0016494 Ciona intestinalis miR-1502d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acttact 7
|||||||
Sbjct: 1 acttact 7
>bmo-miR-3406-5p MIMAT0015611 Bombyx mori miR-3406-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttact 7
|||||||
Sbjct: 8 acttact 2
>lgi-miR-1990 MIMAT0009732 Lottia gigantea miR-1990
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttact 7
|||||||
Sbjct: 7 acttact 1
>hru-miR-1990 MIMAT0009718 Haliotis rufescens miR-1990
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttact 7
|||||||
Sbjct: 7 acttact 1
>oan-miR-1377 MIMAT0007107 Ornithorhynchus anatinus miR-1377
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttact 7
|||||||
Sbjct: 8 acttact 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 144
Number of extensions: 136
Number of successful extensions: 114
Number of sequences better than 100.0: 8
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
