BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h6-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hme-miR-1b MIMAT0024945 Heliconius melpomene miR-1b 14 20
mse-miR-1b MIMAT0024493 Manduca sexta miR-1b 14 20
tgu-miR-2963-5p MIMAT0026961 Taeniopygia guttata miR-2963-5p 14 20
bmo-miR-1b-3p MIMAT0013788 Bombyx mori miR-1b-3p 14 20
hsv1-miR-H6-3p MIMAT0008404 Herpes Simplex miR-H6-3p 14 20
hsa-miR-9500 MIMAT0035542 Homo sapiens miR-9500 12 80
efu-miR-9287 MIMAT0034942 Eptesicus fuscus miR-9287 12 80
cfa-miR-8808 MIMAT0034298 Canis familiaris miR-8808 12 80
sma-miR-8414-5p MIMAT0033532 Schistosoma mansoni miR-8414-5p 12 80
ssa-miR-138-3-3p MIMAT0032354 Salmo salar miR-138-3-3p 12 80
ppe-miR8133-3p MIMAT0031564 Prunus persica miR8133-3p 12 80
mmu-miR-7665-5p MIMAT0029836 Mus musculus miR-7665-5p 12 80
lja-miR408 MIMAT0029327 Lotus japonicus miR408 12 80
gga-miR-7455-3p MIMAT0029065 Gallus gallus miR-7455-3p 12 80
mdo-miR-7343-3p MIMAT0028697 Monodelphis domestica miR-7343-3p 12 80
mdo-miR-7261-5p MIMAT0028488 Monodelphis domestica miR-7261-5p 12 80
mmu-miR-7118-5p MIMAT0028133 Mus musculus miR-7118-5p 12 80
mmu-miR-7074-5p MIMAT0028054 Mus musculus miR-7074-5p 12 80
mmu-miR-6976-5p MIMAT0027854 Mus musculus miR-6976-5p 12 80
mmu-miR-3547-5p MIMAT0027832 Mus musculus miR-3547-5p 12 80
mmu-miR-6915-3p MIMAT0027731 Mus musculus miR-6915-3p 12 80
hsa-miR-6780b-5p MIMAT0027572 Homo sapiens miR-6780b-5p 12 80
hsa-miR-6734-3p MIMAT0027370 Homo sapiens miR-6734-3p 12 80
gga-miR-6695-5p MIMAT0025801 Gallus gallus miR-6695-5p 12 80
mmu-miR-6405 MIMAT0025157 Mus musculus miR-6405 12 80
mmu-miR-6404 MIMAT0025156 Mus musculus miR-6404 12 80
mmu-miR-6368 MIMAT0025112 Mus musculus miR-6368 12 80
sma-miR-31-3p MIMAT0032136 Schistosoma mansoni miR-31-3p 12 80
ppe-miR482b-3p MIMAT0027273 Prunus persica miR482b-3p 12 80
hsa-miR-6077 MIMAT0023702 Homo sapiens miR-6077 12 80
ola-miR-459-3p MIMAT0022665 Oryzias latipes miR-459-3p 12 80
rgl-miR164 MIMAT0023004 Rehmannia glutinosa miR164 12 80
sbi-miR5564a MIMAT0022241 Sorghum bicolor miR5564a 12 80
hsa-miR-4725-3p MIMAT0019844 Homo sapiens miR-4725-3p 12 80
tca-miR-3049-5p MIMAT0018776 Tribolium castaneum miR-3049-5p 12 80
mghv-miR-M1-13-5p MIMAT0018172 Mouse gammaherpesvirus miR-M1-13-5p 12 80
ame-miR-3049-5p MIMAT0022968 Apis mellifera miR-3049-5p 12 80
hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p 12 80
hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271 12 80
cin-miR-4095-5p MIMAT0016676 Ciona intestinalis miR-4095-5p 12 80
ppy-miR-617 MIMAT0016059 Pongo pygmaeus miR-617 12 80
api-miR-3049 MIMAT0014789 Acyrthosiphon pisum miR-3049 12 80
bta-miR-2883 MIMAT0013841 Bos taurus miR-2883 12 80
bta-miR-2426 MIMAT0011996 Bos taurus miR-2426 12 80
bta-miR-2406 MIMAT0011964 Bos taurus miR-2406 12 80
bta-miR-2382-3p MIMAT0011931 Bos taurus miR-2382-3p 12 80
bta-miR-2373-5p MIMAT0011918 Bos taurus miR-2373-5p 12 80
bta-miR-2340 MIMAT0011875 Bos taurus miR-2340 12 80
ptr-miR-617 MIMAT0008279 Pan troglodytes miR-617 12 80
gga-miR-1778 MIMAT0007689 Gallus gallus miR-1778 12 80
dme-miR-979-3p MIMAT0005495 Drosophila melanogaster miR-979-3p 12 80
hsa-miR-617 MIMAT0003286 Homo sapiens miR-617 12 80
>hme-miR-1b MIMAT0024945 Heliconius melpomene miR-1b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttccc 7
|||||||
Sbjct: 8 acttccc 2
>mse-miR-1b MIMAT0024493 Manduca sexta miR-1b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttccc 7
|||||||
Sbjct: 8 acttccc 2
>tgu-miR-2963-5p MIMAT0026961 Taeniopygia guttata miR-2963-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acttccc 7
|||||||
Sbjct: 1 acttccc 7
>bmo-miR-1b-3p MIMAT0013788 Bombyx mori miR-1b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttccc 7
|||||||
Sbjct: 8 acttccc 2
>hsv1-miR-H6-3p MIMAT0008404 Herpes Simplex miR-H6-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acttccc 7
|||||||
Sbjct: 2 acttccc 8
>hsa-miR-9500 MIMAT0035542 Homo sapiens miR-9500
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>efu-miR-9287 MIMAT0034942 Eptesicus fuscus miR-9287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 3 acttcc 8
>cfa-miR-8808 MIMAT0034298 Canis familiaris miR-8808
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 7 cttccc 2
>sma-miR-8414-5p MIMAT0033532 Schistosoma mansoni miR-8414-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 1 acttcc 6
>ssa-miR-138-3-3p MIMAT0032354 Salmo salar miR-138-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 3 acttcc 8
>ppe-miR8133-3p MIMAT0031564 Prunus persica miR8133-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 3 acttcc 8
>mmu-miR-7665-5p MIMAT0029836 Mus musculus miR-7665-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>lja-miR408 MIMAT0029327 Lotus japonicus miR408
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>gga-miR-7455-3p MIMAT0029065 Gallus gallus miR-7455-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttccc 7
||||||
Sbjct: 1 cttccc 6
>mdo-miR-7343-3p MIMAT0028697 Monodelphis domestica miR-7343-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 3 acttcc 8
>mdo-miR-7261-5p MIMAT0028488 Monodelphis domestica miR-7261-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>mmu-miR-7118-5p MIMAT0028133 Mus musculus miR-7118-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>mmu-miR-7074-5p MIMAT0028054 Mus musculus miR-7074-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 7 cttccc 2
>mmu-miR-6976-5p MIMAT0027854 Mus musculus miR-6976-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>mmu-miR-3547-5p MIMAT0027832 Mus musculus miR-3547-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>mmu-miR-6915-3p MIMAT0027731 Mus musculus miR-6915-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 3 acttcc 8
>hsa-miR-6780b-5p MIMAT0027572 Homo sapiens miR-6780b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>hsa-miR-6734-3p MIMAT0027370 Homo sapiens miR-6734-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttccc 7
||||||
Sbjct: 3 cttccc 8
>gga-miR-6695-5p MIMAT0025801 Gallus gallus miR-6695-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>mmu-miR-6405 MIMAT0025157 Mus musculus miR-6405
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>mmu-miR-6404 MIMAT0025156 Mus musculus miR-6404
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>mmu-miR-6368 MIMAT0025112 Mus musculus miR-6368
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>sma-miR-31-3p MIMAT0032136 Schistosoma mansoni miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttccc 7
||||||
Sbjct: 3 cttccc 8
>ppe-miR482b-3p MIMAT0027273 Prunus persica miR482b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttccc 7
||||||
Sbjct: 1 cttccc 6
>hsa-miR-6077 MIMAT0023702 Homo sapiens miR-6077
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 6 cttccc 1
>ola-miR-459-3p MIMAT0022665 Oryzias latipes miR-459-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acttcc 6
||||||
Sbjct: 8 acttcc 3
>rgl-miR164 MIMAT0023004 Rehmannia glutinosa miR164
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>sbi-miR5564a MIMAT0022241 Sorghum bicolor miR5564a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>hsa-miR-4725-3p MIMAT0019844 Homo sapiens miR-4725-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>tca-miR-3049-5p MIMAT0018776 Tribolium castaneum miR-3049-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>mghv-miR-M1-13-5p MIMAT0018172 Mouse gammaherpesvirus
miR-M1-13-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 7 cttccc 2
>ame-miR-3049-5p MIMAT0022968 Apis mellifera miR-3049-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttccc 7
||||||
Sbjct: 1 cttccc 6
>hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>cin-miR-4095-5p MIMAT0016676 Ciona intestinalis miR-4095-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttccc 7
||||||
Sbjct: 1 cttccc 6
>ppy-miR-617 MIMAT0016059 Pongo pygmaeus miR-617
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 3 acttcc 8
>api-miR-3049 MIMAT0014789 Acyrthosiphon pisum miR-3049
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>bta-miR-2883 MIMAT0013841 Bos taurus miR-2883
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttccc 7
||||||
Sbjct: 1 cttccc 6
>bta-miR-2426 MIMAT0011996 Bos taurus miR-2426
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 acttcc 6
||||||
Sbjct: 8 acttcc 3
>bta-miR-2406 MIMAT0011964 Bos taurus miR-2406
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>bta-miR-2382-3p MIMAT0011931 Bos taurus miR-2382-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 3 acttcc 8
>bta-miR-2373-5p MIMAT0011918 Bos taurus miR-2373-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttccc 7
||||||
Sbjct: 1 cttccc 6
>bta-miR-2340 MIMAT0011875 Bos taurus miR-2340
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 3 acttcc 8
>ptr-miR-617 MIMAT0008279 Pan troglodytes miR-617
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 3 acttcc 8
>gga-miR-1778 MIMAT0007689 Gallus gallus miR-1778
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttccc 7
||||||
Sbjct: 8 cttccc 3
>dme-miR-979-3p MIMAT0005495 Drosophila melanogaster miR-979-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttccc 7
||||||
Sbjct: 3 cttccc 8
>hsa-miR-617 MIMAT0003286 Homo sapiens miR-617
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 acttcc 6
||||||
Sbjct: 3 acttcc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 85
Number of extensions: 80
Number of successful extensions: 52
Number of sequences better than 100.0: 52
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 52
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
