BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh106-2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bbe-miR-125b-3p MIMAT0031581 Branchiostoma belcheri miR-125b-3p 14 27
mdo-miR-7342-3p MIMAT0028695 Monodelphis domestica miR-7342-3p 14 27
cgr-miR-125b-3p MIMAT0023744 Cricetulus griseus miR-125b-3p 14 27
mmu-miR-5616-3p MIMAT0022360 Mus musculus miR-5616-3p 14 27
osa-miR5501 MIMAT0022134 Oryza sativa miR5501 14 27
vvi-miR3623-5p MIMAT0018007 Vitis vinifera miR3623-5p 14 27
rno-miR-3588 MIMAT0017887 Rattus norvegicus miR-3588 14 27
cqu-miR-125-3p MIMAT0014356 Culex quinquefasciatus miR-125-3p 14 27
bfl-miR-125b MIMAT0010007 Branchiostoma floridae miR-125b 14 27
mmu-miR-669d-5p MIMAT0005833 Mus musculus miR-669d-5p 14 27
hsa-miR-125b-2-3p MIMAT0004603 Homo sapiens miR-125b-2-3p 14 27
>bbe-miR-125b-3p MIMAT0031581 Branchiostoma belcheri miR-125b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttgtg 7
|||||||
Sbjct: 8 acttgtg 2
>mdo-miR-7342-3p MIMAT0028695 Monodelphis domestica miR-7342-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttgtg 7
|||||||
Sbjct: 8 acttgtg 2
>cgr-miR-125b-3p MIMAT0023744 Cricetulus griseus miR-125b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttgtg 7
|||||||
Sbjct: 8 acttgtg 2
>mmu-miR-5616-3p MIMAT0022360 Mus musculus miR-5616-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acttgtg 7
|||||||
Sbjct: 2 acttgtg 8
>osa-miR5501 MIMAT0022134 Oryza sativa miR5501
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttgtgg 8
|||||||
Sbjct: 2 cttgtgg 8
>vvi-miR3623-5p MIMAT0018007 Vitis vinifera miR3623-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttgtg 7
|||||||
Sbjct: 8 acttgtg 2
>rno-miR-3588 MIMAT0017887 Rattus norvegicus miR-3588
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttgtg 7
|||||||
Sbjct: 8 acttgtg 2
>cqu-miR-125-3p MIMAT0014356 Culex quinquefasciatus miR-125-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttgtg 7
|||||||
Sbjct: 8 acttgtg 2
>bfl-miR-125b MIMAT0010007 Branchiostoma floridae miR-125b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttgtg 7
|||||||
Sbjct: 8 acttgtg 2
>mmu-miR-669d-5p MIMAT0005833 Mus musculus miR-669d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 acttgtg 7
|||||||
Sbjct: 1 acttgtg 7
>hsa-miR-125b-2-3p MIMAT0004603 Homo sapiens miR-125b-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 acttgtg 7
|||||||
Sbjct: 8 acttgtg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 138
Number of extensions: 127
Number of successful extensions: 107
Number of sequences better than 100.0: 11
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)