BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-9402-3p MIMAT0035353 Gyrodactylus salaris miR-9402-3p 14 20
hsa-miR-5680 MIMAT0022468 Homo sapiens miR-5680 14 20
mghv-miR-M1-1-3p MIMAT0001564 Mouse gammaherpesvirus miR-M1-1-3p 14 20
oha-miR-203-3p MIMAT0036811 Ophiophagus hannah miR-203-3p 12 80
gra-miR8674b MIMAT0034197 Gossypium raimondii miR8674b 12 80
sma-miR-8463-3p MIMAT0033646 Schistosoma mansoni miR-8463-3p 12 80
ppc-miR-8353-3p MIMAT0033267 Pristionchus pacificus miR-8353-3p 12 80
ppc-miR-8364p-5p MIMAT0033159 Pristionchus pacificus miR-8364p-5p 12 80
ppc-miR-8364q-5p MIMAT0033059 Pristionchus pacificus miR-8364q-5p 12 80
ppc-miR-8253-3p MIMAT0032975 Pristionchus pacificus miR-8253-3p 12 80
ssa-miR-203a-3p MIMAT0032484 Salmo salar miR-203a-3p 12 80
bbe-miR-71-3p MIMAT0031718 Branchiostoma belcheri miR-71-3p 12 80
cbr-miR-7589 MIMAT0029595 Caenorhabditis briggsae miR-7589 12 80
lja-miR7528 MIMAT0029351 Lotus japonicus miR7528 12 80
mdo-miR-7398q-3p MIMAT0028921 Monodelphis domestica miR-7398q-3p 12 80
mdo-miR-7398m-3p MIMAT0028913 Monodelphis domestica miR-7398m-3p 12 80
mdo-miR-7398l-3p MIMAT0028911 Monodelphis domestica miR-7398l-3p 12 80
mdo-miR-7398r-3p MIMAT0028903 Monodelphis domestica miR-7398r-3p 12 80
mdo-miR-7269-5p MIMAT0028508 Monodelphis domestica miR-7269-5p 12 80
mml-miR-7194-5p MIMAT0028348 Macaca mulatta miR-7194-5p 12 80
ccr-miR-203b-3p MIMAT0026262 Cyprinus carpio miR-203b-3p 12 80
ccr-miR-203a MIMAT0026260 Cyprinus carpio miR-203a 12 80
pol-miR-203-3p MIMAT0025443 Paralichthys olivaceus miR-203-3p 12 80
ppe-miR828-3p MIMAT0027282 Prunus persica miR828-3p 12 80
hbr-miR2118 MIMAT0024784 Hevea brasiliensis miR2118 12 80
ola-miR-203 MIMAT0022655 Oryzias latipes miR-203 12 80
ssl-miR395 MIMAT0022516 Salvia sclarea miR395 12 80
aca-miR-29a-1-5p MIMAT0021911 Anolis carolinensis miR-29a-1-5p 12 80
aca-miR-203-3p MIMAT0021852 Anolis carolinensis miR-203-3p 12 80
hsa-miR-5093 MIMAT0021085 Homo sapiens miR-5093 12 80
osa-miR5076 MIMAT0020564 Oryza sativa miR5076 12 80
dme-miR-4916-3p MIMAT0020509 Drosophila melanogaster miR-4916-3p 12 80
pma-miR-203b-3p MIMAT0019514 Petromyzon marinus miR-203b-3p 12 80
pma-miR-203a-3p MIMAT0019512 Petromyzon marinus miR-203a-3p 12 80
oar-miR-539-5p MIMAT0019296 Ovis aries miR-539-5p 12 80
gma-miR4352a MIMAT0018241 Glycine max miR4352a 12 80
tca-miR-3821-3p MIMAT0018669 Tribolium castaneum miR-3821-3p 12 80
cin-miR-4087-5p MIMAT0016662 Ciona intestinalis miR-4087-5p 12 80
ppy-miR-539 MIMAT0015989 Pongo pygmaeus miR-539 12 80
ppy-miR-203 MIMAT0015797 Pongo pygmaeus miR-203 12 80
ath-miR841b-3p MIMAT0017742 Arabidopsis thaliana miR841b-3p 12 80
tgu-miR-203-3p MIMAT0014605 Taeniopygia guttata miR-203-3p 12 80
eca-miR-539 MIMAT0013167 Equus caballus miR-539 12 80
mdo-miR-875-3p MIMAT0026949 Monodelphis domestica miR-875-3p 12 80
bta-miR-1434-3p MIMAT0012040 Bos taurus miR-1434-3p 12 80
sme-miR-2177-5p MIMAT0012165 Schmidtea mediterranea miR-2177-5p 12 80
sme-miR-96b-3p MIMAT0012163 Schmidtea mediterranea miR-96b-3p 12 80
sme-miR-2148-5p MIMAT0011224 Schmidtea mediterranea miR-2148-5p 12 80
cfa-miR-539 MIMAT0009909 Canis familiaris miR-539 12 80
cfa-miR-203 MIMAT0009866 Canis familiaris miR-203 12 80
bfl-miR-71-3p MIMAT0019142 Branchiostoma floridae miR-71-3p 12 80
bta-miR-539 MIMAT0009342 Bos taurus miR-539 12 80
ptr-miR-539 MIMAT0008214 Pan troglodytes miR-539 12 80
ptr-miR-203 MIMAT0008065 Pan troglodytes miR-203 12 80
osa-miR1882e-3p MIMAT0015285 Oryza sativa miR1882e-3p 12 80
mml-miR-539 MIMAT0006405 Macaca mulatta miR-539 12 80
mml-miR-203 MIMAT0006234 Macaca mulatta miR-203 12 80
ath-miR841a-3p MIMAT0032022 Arabidopsis thaliana miR841a-3p 12 80
mdo-miR-203 MIMAT0004126 Monodelphis domestica miR-203 12 80
xtr-miR-203 MIMAT0003695 Xenopus tropicalis miR-203 12 80
rno-miR-539-5p MIMAT0003176 Rattus norvegicus miR-539-5p 12 80
mmu-miR-539-5p MIMAT0003169 Mus musculus miR-539-5p 12 80
hsa-miR-539-5p MIMAT0003163 Homo sapiens miR-539-5p 12 80
tni-miR-203 MIMAT0003076 Tetraodon nigroviridis miR-203 12 80
fru-miR-203 MIMAT0003075 Fugu rubripes miR-203 12 80
dre-miR-203b-3p MIMAT0001865 Danio rerio miR-203b-3p 12 80
dre-miR-203a-3p MIMAT0001278 Danio rerio miR-203a-3p 12 80
gga-miR-203a MIMAT0001146 Gallus gallus miR-203a 12 80
rno-miR-203a-3p MIMAT0000876 Rattus norvegicus miR-203a-3p 12 80
hsa-miR-203a-3p MIMAT0000264 Homo sapiens miR-203a-3p 12 80
mmu-miR-203-3p MIMAT0000236 Mus musculus miR-203-3p 12 80
>gsa-miR-9402-3p MIMAT0035353 Gyrodactylus salaris miR-9402-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaaatg 7
|||||||
Sbjct: 8 agaaatg 2
>hsa-miR-5680 MIMAT0022468 Homo sapiens miR-5680
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaaatg 7
|||||||
Sbjct: 2 agaaatg 8
>mghv-miR-M1-1-3p MIMAT0001564 Mouse gammaherpesvirus
miR-M1-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaaatg 7
|||||||
Sbjct: 2 agaaatg 8
>oha-miR-203-3p MIMAT0036811 Ophiophagus hannah miR-203-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>gra-miR8674b MIMAT0034197 Gossypium raimondii miR8674b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>sma-miR-8463-3p MIMAT0033646 Schistosoma mansoni miR-8463-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 8 agaaat 3
>ppc-miR-8353-3p MIMAT0033267 Pristionchus pacificus miR-8353-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 1 gaaatg 6
>ppc-miR-8364p-5p MIMAT0033159 Pristionchus pacificus
miR-8364p-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatg 7
||||||
Sbjct: 8 gaaatg 3
>ppc-miR-8364q-5p MIMAT0033059 Pristionchus pacificus
miR-8364q-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatg 7
||||||
Sbjct: 8 gaaatg 3
>ppc-miR-8253-3p MIMAT0032975 Pristionchus pacificus miR-8253-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>ssa-miR-203a-3p MIMAT0032484 Salmo salar miR-203a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>bbe-miR-71-3p MIMAT0031718 Branchiostoma belcheri miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatg 7
||||||
Sbjct: 8 gaaatg 3
>cbr-miR-7589 MIMAT0029595 Caenorhabditis briggsae miR-7589
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>lja-miR7528 MIMAT0029351 Lotus japonicus miR7528
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>mdo-miR-7398q-3p MIMAT0028921 Monodelphis domestica
miR-7398q-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 8 agaaat 3
>mdo-miR-7398m-3p MIMAT0028913 Monodelphis domestica
miR-7398m-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 8 agaaat 3
>mdo-miR-7398l-3p MIMAT0028911 Monodelphis domestica
miR-7398l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 8 agaaat 3
>mdo-miR-7398r-3p MIMAT0028903 Monodelphis domestica
miR-7398r-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 8 agaaat 3
>mdo-miR-7269-5p MIMAT0028508 Monodelphis domestica miR-7269-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 1 agaaat 6
>mml-miR-7194-5p MIMAT0028348 Macaca mulatta miR-7194-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>ccr-miR-203b-3p MIMAT0026262 Cyprinus carpio miR-203b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>ccr-miR-203a MIMAT0026260 Cyprinus carpio miR-203a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>pol-miR-203-3p MIMAT0025443 Paralichthys olivaceus miR-203-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>ppe-miR828-3p MIMAT0027282 Prunus persica miR828-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatg 7
||||||
Sbjct: 7 gaaatg 2
>hbr-miR2118 MIMAT0024784 Hevea brasiliensis miR2118
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 1 gaaatg 6
>ola-miR-203 MIMAT0022655 Oryzias latipes miR-203
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>ssl-miR395 MIMAT0022516 Salvia sclarea miR395
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>aca-miR-29a-1-5p MIMAT0021911 Anolis carolinensis miR-29a-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 8 agaaat 3
>aca-miR-203-3p MIMAT0021852 Anolis carolinensis miR-203-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>hsa-miR-5093 MIMAT0021085 Homo sapiens miR-5093
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>osa-miR5076 MIMAT0020564 Oryza sativa miR5076
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 1 gaaatg 6
>dme-miR-4916-3p MIMAT0020509 Drosophila melanogaster
miR-4916-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 8 agaaat 3
>pma-miR-203b-3p MIMAT0019514 Petromyzon marinus miR-203b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>pma-miR-203a-3p MIMAT0019512 Petromyzon marinus miR-203a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>oar-miR-539-5p MIMAT0019296 Ovis aries miR-539-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 1 agaaat 6
>gma-miR4352a MIMAT0018241 Glycine max miR4352a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 6 agaaat 1
>tca-miR-3821-3p MIMAT0018669 Tribolium castaneum miR-3821-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 6 agaaat 1
>cin-miR-4087-5p MIMAT0016662 Ciona intestinalis miR-4087-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatg 7
||||||
Sbjct: 7 gaaatg 2
>ppy-miR-539 MIMAT0015989 Pongo pygmaeus miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>ppy-miR-203 MIMAT0015797 Pongo pygmaeus miR-203
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>ath-miR841b-3p MIMAT0017742 Arabidopsis thaliana miR841b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 8 agaaat 3
>tgu-miR-203-3p MIMAT0014605 Taeniopygia guttata miR-203-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>eca-miR-539 MIMAT0013167 Equus caballus miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>mdo-miR-875-3p MIMAT0026949 Monodelphis domestica miR-875-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>bta-miR-1434-3p MIMAT0012040 Bos taurus miR-1434-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>sme-miR-2177-5p MIMAT0012165 Schmidtea mediterranea miR-2177-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>sme-miR-96b-3p MIMAT0012163 Schmidtea mediterranea miR-96b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatg 7
||||||
Sbjct: 8 gaaatg 3
>sme-miR-2148-5p MIMAT0011224 Schmidtea mediterranea miR-2148-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 1 agaaat 6
>cfa-miR-539 MIMAT0009909 Canis familiaris miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>cfa-miR-203 MIMAT0009866 Canis familiaris miR-203
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>bfl-miR-71-3p MIMAT0019142 Branchiostoma floridae miR-71-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaaatg 7
||||||
Sbjct: 8 gaaatg 3
>bta-miR-539 MIMAT0009342 Bos taurus miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>ptr-miR-539 MIMAT0008214 Pan troglodytes miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>ptr-miR-203 MIMAT0008065 Pan troglodytes miR-203
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>osa-miR1882e-3p MIMAT0015285 Oryza sativa miR1882e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 1 gaaatg 6
>mml-miR-539 MIMAT0006405 Macaca mulatta miR-539
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>mml-miR-203 MIMAT0006234 Macaca mulatta miR-203
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>ath-miR841a-3p MIMAT0032022 Arabidopsis thaliana miR841a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaat 6
||||||
Sbjct: 6 agaaat 1
>mdo-miR-203 MIMAT0004126 Monodelphis domestica miR-203
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>xtr-miR-203 MIMAT0003695 Xenopus tropicalis miR-203
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>rno-miR-539-5p MIMAT0003176 Rattus norvegicus miR-539-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>mmu-miR-539-5p MIMAT0003169 Mus musculus miR-539-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>hsa-miR-539-5p MIMAT0003163 Homo sapiens miR-539-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaat 6
||||||
Sbjct: 3 agaaat 8
>tni-miR-203 MIMAT0003076 Tetraodon nigroviridis miR-203
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>fru-miR-203 MIMAT0003075 Fugu rubripes miR-203
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>dre-miR-203b-3p MIMAT0001865 Danio rerio miR-203b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>dre-miR-203a-3p MIMAT0001278 Danio rerio miR-203a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>gga-miR-203a MIMAT0001146 Gallus gallus miR-203a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>rno-miR-203a-3p MIMAT0000876 Rattus norvegicus miR-203a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>hsa-miR-203a-3p MIMAT0000264 Homo sapiens miR-203a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
>mmu-miR-203-3p MIMAT0000236 Mus musculus miR-203-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaaatg 7
||||||
Sbjct: 3 gaaatg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 90
Number of extensions: 87
Number of successful extensions: 71
Number of sequences better than 100.0: 71
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 71
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
