BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR9
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9019 MIMAT0034560 Equus caballus miR-9019 14 20
ptc-miR7817b MIMAT0030379 Populus trichocarpa miR7817b 14 20
mmu-miR-6957-5p MIMAT0027814 Mus musculus miR-6957-5p 14 20
bdi-miR529-5p MIMAT0020754 Brachypodium distachyon miR529-5p 14 20
hsa-miR-5197-3p MIMAT0021131 Homo sapiens miR-5197-3p 14 20
far-miR529 MIMAT0018373 Festuca arundinacea miR529 14 20
aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p 14 20
tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988 14 20
zma-miR529-5p MIMAT0014030 Zea mays miR529-5p 14 20
aqc-miR529 MIMAT0012592 Aquilegia caerulea miR529 14 20
aqc-miR477d MIMAT0012588 Aquilegia caerulea miR477d 14 20
mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p 14 20
ppt-miR529f MIMAT0005059 Physcomitrella patens miR529f 14 20
ppt-miR529e MIMAT0005058 Physcomitrella patens miR529e 14 20
ppt-miR529d MIMAT0005057 Physcomitrella patens miR529d 14 20
osa-miR529b MIMAT0005015 Oryza sativa miR529b 14 20
chi-miR-877-3p MIMAT0036301 Capra hircus miR-877-3p 12 80
gsa-miR-71b-3p MIMAT0035251 Gyrodactylus salaris miR-71b-3p 12 80
efu-miR-9268 MIMAT0034898 Eptesicus fuscus miR-9268 12 80
eca-miR-9009 MIMAT0034549 Equus caballus miR-9009 12 80
cfa-miR-8848 MIMAT0034343 Canis familiaris miR-8848 12 80
gra-miR8732 MIMAT0034137 Gossypium raimondii miR8732 12 80
ppc-miR-8310-3p MIMAT0033151 Pristionchus pacificus miR-8310-3p 12 80
ppc-miR-8268-3p MIMAT0033023 Pristionchus pacificus miR-8268-3p 12 80
cel-miR-8209-3p MIMAT0032836 Caenorhabditis elegans miR-8209-3p 12 80
bbe-miR-22-5p MIMAT0031652 Branchiostoma belcheri miR-22-5p 12 80
stu-miR8013 MIMAT0030909 Solanum tuberosum miR8013 12 80
ptc-miR7815 MIMAT0030373 Populus trichocarpa miR7815 12 80
bdi-miR7785-3p MIMAT0030327 Brachypodium distachyon miR7785-3p 12 80
mmu-miR-7007-5p MIMAT0027918 Mus musculus miR-7007-5p 12 80
mmu-miR-6946-3p MIMAT0027793 Mus musculus miR-6946-3p 12 80
hsa-miR-6740-3p MIMAT0027382 Homo sapiens miR-6740-3p 12 80
gga-miR-6631-5p MIMAT0025727 Gallus gallus miR-6631-5p 12 80
gga-miR-6577-5p MIMAT0025661 Gallus gallus miR-6577-5p 12 80
hsa-miR-6515-3p MIMAT0025487 Homo sapiens miR-6515-3p 12 80
sma-miR-36a-5p MIMAT0032137 Schistosoma mansoni miR-36a-5p 12 80
hvu-miR6181 MIMAT0024805 Hordeum vulgare miR6181 12 80
mml-miR-676-5p MIMAT0027113 Macaca mulatta miR-676-5p 12 80
hsa-miR-6077 MIMAT0023702 Homo sapiens miR-6077 12 80
tca-miR-6016-5p MIMAT0023573 Tribolium castaneum miR-6016-5p 12 80
aca-miR-5402-5p MIMAT0022012 Anolis carolinensis miR-5402-5p 12 80
mtr-miR2629h MIMAT0021310 Medicago truncatula miR2629h 12 80
mtr-miR5224b MIMAT0021185 Medicago truncatula miR5224b 12 80
ath-miR5021 MIMAT0020525 Arabidopsis thaliana miR5021 12 80
hsa-miR-4778-3p MIMAT0019937 Homo sapiens miR-4778-3p 12 80
hsa-miR-4709-3p MIMAT0019812 Homo sapiens miR-4709-3p 12 80
hsa-miR-4699-5p MIMAT0019794 Homo sapiens miR-4699-5p 12 80
hsa-miR-4659b-3p MIMAT0019734 Homo sapiens miR-4659b-3p 12 80
hsa-miR-4659a-3p MIMAT0019727 Homo sapiens miR-4659a-3p 12 80
bcy-miR529 MIMAT0020967 Bruguiera cylindrica miR529 12 80
bgy-miR529 MIMAT0020963 Bruguiera gymnorhiza miR529 12 80
gma-miR156g MIMAT0018339 Glycine max miR156g 12 80
tca-miR-3859-3p MIMAT0018791 Tribolium castaneum miR-3859-3p 12 80
tca-miR-3852-3p MIMAT0018761 Tribolium castaneum miR-3852-3p 12 80
bmo-miR-2808e MIMAT0015417 Bombyx mori miR-2808e 12 80
hsa-miR-3185 MIMAT0015065 Homo sapiens miR-3185 12 80
osa-miR2930 MIMAT0014061 Oryza sativa miR2930 12 80
ssc-miR-676-5p MIMAT0017382 Sus scrofa miR-676-5p 12 80
osa-miR2097-3p MIMAT0010059 Oryza sativa miR2097-3p 12 80
cfa-miR-300 MIMAT0009929 Canis familiaris miR-300 12 80
bfl-miR-22-5p MIMAT0019138 Branchiostoma floridae miR-22-5p 12 80
dvi-miR-13a-5p MIMAT0032046 Drosophila virilis miR-13a-5p 12 80
ptr-miR-942 MIMAT0008348 Pan troglodytes miR-942 12 80
ptr-miR-1253 MIMAT0007978 Pan troglodytes miR-1253 12 80
cfa-miR-676 MIMAT0006762 Canis familiaris miR-676 12 80
vvi-miR395n MIMAT0006559 Vitis vinifera miR395n 12 80
hsa-miR-1253 MIMAT0005904 Homo sapiens miR-1253 12 80
mcmv-miR-m01-2-5p MIMAT0005534 Mouse cytomegalovirus miR-m01-2-5p 12 80
hsa-miR-942-5p MIMAT0004985 Homo sapiens miR-942-5p 12 80
cre-miR908.1 MIMAT0004965 Chlamydomonas reinhardtii miR908.1 12 80
cre-miR907 MIMAT0004389 Chlamydomonas reinhardtii miR907 12 80
hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p 12 80
ath-miR830-5p MIMAT0004247 Arabidopsis thaliana miR830-5p 12 80
rno-miR-300-5p MIMAT0004743 Rattus norvegicus miR-300-5p 12 80
mmu-miR-300-5p MIMAT0004578 Mus musculus miR-300-5p 12 80
ath-miR163 MIMAT0000184 Arabidopsis thaliana miR163 12 80
>eca-miR-9019 MIMAT0034560 Equus caballus miR-9019
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 1 agaagag 7
>ptc-miR7817b MIMAT0030379 Populus trichocarpa miR7817b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaagag 7
|||||||
Sbjct: 8 agaagag 2
>mmu-miR-6957-5p MIMAT0027814 Mus musculus miR-6957-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 2 agaagag 8
>bdi-miR529-5p MIMAT0020754 Brachypodium distachyon miR529-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 1 agaagag 7
>hsa-miR-5197-3p MIMAT0021131 Homo sapiens miR-5197-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 2 agaagag 8
>far-miR529 MIMAT0018373 Festuca arundinacea miR529
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 1 agaagag 7
>aly-miR831-5p MIMAT0017613 Arabidopsis lyrata miR831-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 1 agaagag 7
>tgu-miR-2988 MIMAT0014498 Taeniopygia guttata miR-2988
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaagag 7
|||||||
Sbjct: 8 agaagag 2
>zma-miR529-5p MIMAT0014030 Zea mays miR529-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 1 agaagag 7
>aqc-miR529 MIMAT0012592 Aquilegia caerulea miR529
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 1 agaagag 7
>aqc-miR477d MIMAT0012588 Aquilegia caerulea miR477d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaagag 7
|||||||
Sbjct: 7 agaagag 1
>mml-miR-877-3p MIMAT0026911 Macaca mulatta miR-877-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaagag 7
|||||||
Sbjct: 8 agaagag 2
>ppt-miR529f MIMAT0005059 Physcomitrella patens miR529f
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 1 agaagag 7
>ppt-miR529e MIMAT0005058 Physcomitrella patens miR529e
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 1 agaagag 7
>ppt-miR529d MIMAT0005057 Physcomitrella patens miR529d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 1 agaagag 7
>osa-miR529b MIMAT0005015 Oryza sativa miR529b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagag 7
|||||||
Sbjct: 1 agaagag 7
>chi-miR-877-3p MIMAT0036301 Capra hircus miR-877-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 8 gaagag 3
>gsa-miR-71b-3p MIMAT0035251 Gyrodactylus salaris miR-71b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 8 agaaga 3
>efu-miR-9268 MIMAT0034898 Eptesicus fuscus miR-9268
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>eca-miR-9009 MIMAT0034549 Equus caballus miR-9009
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 1 agaaga 6
>cfa-miR-8848 MIMAT0034343 Canis familiaris miR-8848
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>gra-miR8732 MIMAT0034137 Gossypium raimondii miR8732
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 1 gaagag 6
>ppc-miR-8310-3p MIMAT0033151 Pristionchus pacificus miR-8310-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 8 agaaga 3
>ppc-miR-8268-3p MIMAT0033023 Pristionchus pacificus miR-8268-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>cel-miR-8209-3p MIMAT0032836 Caenorhabditis elegans miR-8209-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>bbe-miR-22-5p MIMAT0031652 Branchiostoma belcheri miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 8 gaagag 3
>stu-miR8013 MIMAT0030909 Solanum tuberosum miR8013
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 1 agaaga 6
>ptc-miR7815 MIMAT0030373 Populus trichocarpa miR7815
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 6 gaagag 1
>bdi-miR7785-3p MIMAT0030327 Brachypodium distachyon miR7785-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 8 agaaga 3
>mmu-miR-7007-5p MIMAT0027918 Mus musculus miR-7007-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 3 agaaga 8
>mmu-miR-6946-3p MIMAT0027793 Mus musculus miR-6946-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 8 agaaga 3
>hsa-miR-6740-3p MIMAT0027382 Homo sapiens miR-6740-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 8 agaaga 3
>gga-miR-6631-5p MIMAT0025727 Gallus gallus miR-6631-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 1 gaagag 6
>gga-miR-6577-5p MIMAT0025661 Gallus gallus miR-6577-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 8 agaaga 3
>hsa-miR-6515-3p MIMAT0025487 Homo sapiens miR-6515-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 7 gaagag 2
>sma-miR-36a-5p MIMAT0032137 Schistosoma mansoni miR-36a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 1 gaagag 6
>hvu-miR6181 MIMAT0024805 Hordeum vulgare miR6181
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 8 gaagag 3
>mml-miR-676-5p MIMAT0027113 Macaca mulatta miR-676-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 6 gaagag 1
>hsa-miR-6077 MIMAT0023702 Homo sapiens miR-6077
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 3 gaagag 8
>tca-miR-6016-5p MIMAT0023573 Tribolium castaneum miR-6016-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 1 agaaga 6
>aca-miR-5402-5p MIMAT0022012 Anolis carolinensis miR-5402-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>mtr-miR2629h MIMAT0021310 Medicago truncatula miR2629h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 3 agaaga 8
>mtr-miR5224b MIMAT0021185 Medicago truncatula miR5224b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 3 gaagag 8
>ath-miR5021 MIMAT0020525 Arabidopsis thaliana miR5021
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 3 agaaga 8
>hsa-miR-4778-3p MIMAT0019937 Homo sapiens miR-4778-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>hsa-miR-4709-3p MIMAT0019812 Homo sapiens miR-4709-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 3 gaagag 8
>hsa-miR-4699-5p MIMAT0019794 Homo sapiens miR-4699-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 1 agaaga 6
>hsa-miR-4659b-3p MIMAT0019734 Homo sapiens miR-4659b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 8 agaaga 3
>hsa-miR-4659a-3p MIMAT0019727 Homo sapiens miR-4659a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 8 agaaga 3
>bcy-miR529 MIMAT0020967 Bruguiera cylindrica miR529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 3 agaaga 8
>bgy-miR529 MIMAT0020963 Bruguiera gymnorhiza miR529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 3 agaaga 8
>gma-miR156g MIMAT0018339 Glycine max miR156g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 3 agaaga 8
>tca-miR-3859-3p MIMAT0018791 Tribolium castaneum miR-3859-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 1 gaagag 6
>tca-miR-3852-3p MIMAT0018761 Tribolium castaneum miR-3852-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>bmo-miR-2808e MIMAT0015417 Bombyx mori miR-2808e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 3 agaaga 8
>hsa-miR-3185 MIMAT0015065 Homo sapiens miR-3185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 1 agaaga 6
>osa-miR2930 MIMAT0014061 Oryza sativa miR2930
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 8 gaagag 3
>ssc-miR-676-5p MIMAT0017382 Sus scrofa miR-676-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 6 gaagag 1
>osa-miR2097-3p MIMAT0010059 Oryza sativa miR2097-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 8 gaagag 3
>cfa-miR-300 MIMAT0009929 Canis familiaris miR-300
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 3 gaagag 8
>bfl-miR-22-5p MIMAT0019138 Branchiostoma floridae miR-22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 8 gaagag 3
>dvi-miR-13a-5p MIMAT0032046 Drosophila virilis miR-13a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 6 gaagag 1
>ptr-miR-942 MIMAT0008348 Pan troglodytes miR-942
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>ptr-miR-1253 MIMAT0007978 Pan troglodytes miR-1253
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 3 agaaga 8
>cfa-miR-676 MIMAT0006762 Canis familiaris miR-676
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 6 gaagag 1
>vvi-miR395n MIMAT0006559 Vitis vinifera miR395n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 3 gaagag 8
>hsa-miR-1253 MIMAT0005904 Homo sapiens miR-1253
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 3 agaaga 8
>mcmv-miR-m01-2-5p MIMAT0005534 Mouse cytomegalovirus
miR-m01-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 1 gaagag 6
>hsa-miR-942-5p MIMAT0004985 Homo sapiens miR-942-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>cre-miR908.1 MIMAT0004965 Chlamydomonas reinhardtii miR908.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaaga 6
||||||
Sbjct: 3 agaaga 8
>cre-miR907 MIMAT0004389 Chlamydomonas reinhardtii miR907
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>hsa-miR-877-3p MIMAT0004950 Homo sapiens miR-877-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagag 7
||||||
Sbjct: 8 gaagag 3
>ath-miR830-5p MIMAT0004247 Arabidopsis thaliana miR830-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaaga 6
||||||
Sbjct: 6 agaaga 1
>rno-miR-300-5p MIMAT0004743 Rattus norvegicus miR-300-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 3 gaagag 8
>mmu-miR-300-5p MIMAT0004578 Mus musculus miR-300-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 3 gaagag 8
>ath-miR163 MIMAT0000184 Arabidopsis thaliana miR163
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagag 7
||||||
Sbjct: 3 gaagag 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 113
Number of extensions: 97
Number of successful extensions: 76
Number of sequences better than 100.0: 76
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 76
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)