BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s80
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
str-miR-240-5p MIMAT0033446 Strongyloides ratti miR-240-5p 14 20
prd-miR-35a-5p MIMAT0030714 Panagrellus redivivus miR-35a-5p 14 20
ghr-miR7511 MIMAT0029160 Gossypium hirsutum miR7511 14 20
rgl-miR5576 MIMAT0023001 Rehmannia glutinosa miR5576 14 20
asu-miR-5348-5p MIMAT0021548 Ascaris suum miR-5348-5p 14 20
osa-miR5157b-3p MIMAT0021110 Oryza sativa miR5157b-3p 14 20
osa-miR5157a-3p MIMAT0021108 Oryza sativa miR5157a-3p 14 20
bta-miR-2284i MIMAT0011792 Bos taurus miR-2284i 14 20
chi-miR-382-5p MIMAT0036200 Capra hircus miR-382-5p 12 80
chi-miR-148b-5p MIMAT0035978 Capra hircus miR-148b-5p 12 80
efu-miR-9338 MIMAT0035101 Eptesicus fuscus miR-9338 12 80
gra-miR7484c MIMAT0034055 Gossypium raimondii miR7484c 12 80
sma-miR-8445-5p MIMAT0033600 Schistosoma mansoni miR-8445-5p 12 80
ssa-miR-7132a-3p MIMAT0032666 Salmo salar miR-7132a-3p 12 80
bbe-miR-2058-5p MIMAT0031615 Branchiostoma belcheri miR-2058-5p 12 80
bbe-miR-2057-5p MIMAT0031613 Branchiostoma belcheri miR-2057-5p 12 80
ppe-miR8133-3p MIMAT0031564 Prunus persica miR8133-3p 12 80
bdi-miR5181c-3p MIMAT0030108 Brachypodium distachyon miR5181c-3p 12 80
oan-miR-7422a-3p MIMAT0028995 Ornithorhynchus anatinus miR-7422a-3p 12 80
mdo-miR-7386m-3p MIMAT0028863 Monodelphis domestica miR-7386m-3p 12 80
mdo-miR-7386k-3p MIMAT0028849 Monodelphis domestica miR-7386k-3p 12 80
mdo-miR-7296-5p MIMAT0028576 Monodelphis domestica miR-7296-5p 12 80
mml-miR-548h-5p MIMAT0028256 Macaca mulatta miR-548h-5p 12 80
mml-miR-6505-3p MIMAT0028249 Macaca mulatta miR-6505-3p 12 80
mmu-miR-7079-3p MIMAT0028065 Mus musculus miR-7079-3p 12 80
gga-miR-6590-3p MIMAT0025683 Gallus gallus miR-6590-3p 12 80
hsa-miR-6505-3p MIMAT0025467 Homo sapiens miR-6505-3p 12 80
ppe-miR6287 MIMAT0027319 Prunus persica miR6287 12 80
cca-miR6112 MIMAT0024551 Cynara cardunculus miR6112 12 80
cca-miR6103-3p MIMAT0024536 Cynara cardunculus miR6103-3p 12 80
cgr-miR-382 MIMAT0023947 Cricetulus griseus miR-382 12 80
cgr-miR-148b-5p MIMAT0023778 Cricetulus griseus miR-148b-5p 12 80
hsa-miR-548ax MIMAT0022474 Homo sapiens miR-548ax 12 80
aca-miR-148b-5p MIMAT0021782 Anolis carolinensis miR-148b-5p 12 80
hsa-miR-548ao-5p MIMAT0021029 Homo sapiens miR-548ao-5p 12 80
hsa-miR-4795-5p MIMAT0019968 Homo sapiens miR-4795-5p 12 80
oar-miR-382-5p MIMAT0019306 Ovis aries miR-382-5p 12 80
oar-miR-495-5p MIMAT0019273 Ovis aries miR-495-5p 12 80
hsa-miR-3682-5p MIMAT0019222 Homo sapiens miR-3682-5p 12 80
ppy-miR-382 MIMAT0015872 Pongo pygmaeus miR-382 12 80
ssc-miR-148b-5p MIMAT0022955 Sus scrofa miR-148b-5p 12 80
eca-miR-382 MIMAT0013150 Equus caballus miR-382 12 80
eca-miR-148b-5p MIMAT0012971 Equus caballus miR-148b-5p 12 80
mml-miR-543-5p MIMAT0026953 Macaca mulatta miR-543-5p 12 80
bmo-miR-2824 MIMAT0013735 Bombyx mori miR-2824 12 80
mtr-miR2591 MIMAT0013267 Medicago truncatula miR2591 12 80
bta-miR-2464-5p MIMAT0012051 Bos taurus miR-2464-5p 12 80
bfl-miR-2058-5p MIMAT0009984 Branchiostoma floridae miR-2058-5p 12 80
bfl-miR-2057 MIMAT0009983 Branchiostoma floridae miR-2057 12 80
nve-miR-2023-3p MIMAT0009756 Nematostella vectensis miR-2023-3p 12 80
bta-miR-382 MIMAT0009308 Bos taurus miR-382 12 80
dan-miR-284 MIMAT0008415 Drosophila ananassae miR-284 12 80
ptr-miR-382 MIMAT0008134 Pan troglodytes miR-382 12 80
mml-miR-495-5p MIMAT0026886 Macaca mulatta miR-495-5p 12 80
mml-miR-382-5p MIMAT0006311 Macaca mulatta miR-382-5p 12 80
mml-miR-148b-5p MIMAT0026826 Macaca mulatta miR-148b-5p 12 80
gga-miR-1804 MIMAT0007721 Gallus gallus miR-1804 12 80
oan-miR-1418-5p MIMAT0007276 Ornithorhynchus anatinus miR-1418-5p 12 80
oan-miR-1421f-5p MIMAT0006973 Ornithorhynchus anatinus miR-1421f-5p 12 80
mmu-miR-495-5p MIMAT0017249 Mus musculus miR-495-5p 12 80
rno-miR-382-5p MIMAT0003201 Rattus norvegicus miR-382-5p 12 80
hsa-miR-495-5p MIMAT0022924 Homo sapiens miR-495-5p 12 80
mmu-miR-382-5p MIMAT0000747 Mus musculus miR-382-5p 12 80
hsa-miR-382-5p MIMAT0000737 Homo sapiens miR-382-5p 12 80
mmu-miR-148b-5p MIMAT0017036 Mus musculus miR-148b-5p 12 80
rno-miR-148b-5p MIMAT0004645 Rattus norvegicus miR-148b-5p 12 80
>str-miR-240-5p MIMAT0033446 Strongyloides ratti miR-240-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagtt 7
|||||||
Sbjct: 1 agaagtt 7
>prd-miR-35a-5p MIMAT0030714 Panagrellus redivivus miR-35a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaagtt 7
|||||||
Sbjct: 7 agaagtt 1
>ghr-miR7511 MIMAT0029160 Gossypium hirsutum miR7511
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagtt 7
|||||||
Sbjct: 1 agaagtt 7
>rgl-miR5576 MIMAT0023001 Rehmannia glutinosa miR5576
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagtt 7
|||||||
Sbjct: 1 agaagtt 7
>asu-miR-5348-5p MIMAT0021548 Ascaris suum miR-5348-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagtt 7
|||||||
Sbjct: 2 agaagtt 8
>osa-miR5157b-3p MIMAT0021110 Oryza sativa miR5157b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagtt 7
|||||||
Sbjct: 1 agaagtt 7
>osa-miR5157a-3p MIMAT0021108 Oryza sativa miR5157a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagtt 7
|||||||
Sbjct: 1 agaagtt 7
>bta-miR-2284i MIMAT0011792 Bos taurus miR-2284i
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaagtt 7
|||||||
Sbjct: 2 agaagtt 8
>chi-miR-382-5p MIMAT0036200 Capra hircus miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>chi-miR-148b-5p MIMAT0035978 Capra hircus miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>efu-miR-9338 MIMAT0035101 Eptesicus fuscus miR-9338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 1 agaagt 6
>gra-miR7484c MIMAT0034055 Gossypium raimondii miR7484c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 1 agaagt 6
>sma-miR-8445-5p MIMAT0033600 Schistosoma mansoni miR-8445-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagtt 7
||||||
Sbjct: 6 gaagtt 1
>ssa-miR-7132a-3p MIMAT0032666 Salmo salar miR-7132a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>bbe-miR-2058-5p MIMAT0031615 Branchiostoma belcheri miR-2058-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>bbe-miR-2057-5p MIMAT0031613 Branchiostoma belcheri miR-2057-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>ppe-miR8133-3p MIMAT0031564 Prunus persica miR8133-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagtt 7
||||||
Sbjct: 7 gaagtt 2
>bdi-miR5181c-3p MIMAT0030108 Brachypodium distachyon
miR5181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaagt 6
||||||
Sbjct: 6 agaagt 1
>oan-miR-7422a-3p MIMAT0028995 Ornithorhynchus anatinus
miR-7422a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaagt 6
||||||
Sbjct: 6 agaagt 1
>mdo-miR-7386m-3p MIMAT0028863 Monodelphis domestica
miR-7386m-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>mdo-miR-7386k-3p MIMAT0028849 Monodelphis domestica
miR-7386k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>mdo-miR-7296-5p MIMAT0028576 Monodelphis domestica miR-7296-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>mml-miR-548h-5p MIMAT0028256 Macaca mulatta miR-548h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 1 agaagt 6
>mml-miR-6505-3p MIMAT0028249 Macaca mulatta miR-6505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaagt 6
||||||
Sbjct: 8 agaagt 3
>mmu-miR-7079-3p MIMAT0028065 Mus musculus miR-7079-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaagt 6
||||||
Sbjct: 8 agaagt 3
>gga-miR-6590-3p MIMAT0025683 Gallus gallus miR-6590-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaagt 6
||||||
Sbjct: 8 agaagt 3
>hsa-miR-6505-3p MIMAT0025467 Homo sapiens miR-6505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaagt 6
||||||
Sbjct: 8 agaagt 3
>ppe-miR6287 MIMAT0027319 Prunus persica miR6287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>cca-miR6112 MIMAT0024551 Cynara cardunculus miR6112
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>cca-miR6103-3p MIMAT0024536 Cynara cardunculus miR6103-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>cgr-miR-382 MIMAT0023947 Cricetulus griseus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>cgr-miR-148b-5p MIMAT0023778 Cricetulus griseus miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>hsa-miR-548ax MIMAT0022474 Homo sapiens miR-548ax
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 1 agaagt 6
>aca-miR-148b-5p MIMAT0021782 Anolis carolinensis miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>hsa-miR-548ao-5p MIMAT0021029 Homo sapiens miR-548ao-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 1 agaagt 6
>hsa-miR-4795-5p MIMAT0019968 Homo sapiens miR-4795-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 1 agaagt 6
>oar-miR-382-5p MIMAT0019306 Ovis aries miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>oar-miR-495-5p MIMAT0019273 Ovis aries miR-495-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 1 agaagt 6
>hsa-miR-3682-5p MIMAT0019222 Homo sapiens miR-3682-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaagt 6
||||||
Sbjct: 8 agaagt 3
>ppy-miR-382 MIMAT0015872 Pongo pygmaeus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>ssc-miR-148b-5p MIMAT0022955 Sus scrofa miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>eca-miR-382 MIMAT0013150 Equus caballus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>eca-miR-148b-5p MIMAT0012971 Equus caballus miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>mml-miR-543-5p MIMAT0026953 Macaca mulatta miR-543-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>bmo-miR-2824 MIMAT0013735 Bombyx mori miR-2824
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagtt 7
||||||
Sbjct: 6 gaagtt 1
>mtr-miR2591 MIMAT0013267 Medicago truncatula miR2591
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagtt 7
||||||
Sbjct: 8 gaagtt 3
>bta-miR-2464-5p MIMAT0012051 Bos taurus miR-2464-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaagt 6
||||||
Sbjct: 6 agaagt 1
>bfl-miR-2058-5p MIMAT0009984 Branchiostoma floridae miR-2058-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>bfl-miR-2057 MIMAT0009983 Branchiostoma floridae miR-2057
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>nve-miR-2023-3p MIMAT0009756 Nematostella vectensis miR-2023-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>bta-miR-382 MIMAT0009308 Bos taurus miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>dan-miR-284 MIMAT0008415 Drosophila ananassae miR-284
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 1 agaagt 6
>ptr-miR-382 MIMAT0008134 Pan troglodytes miR-382
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>mml-miR-495-5p MIMAT0026886 Macaca mulatta miR-495-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>mml-miR-382-5p MIMAT0006311 Macaca mulatta miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>mml-miR-148b-5p MIMAT0026826 Macaca mulatta miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>gga-miR-1804 MIMAT0007721 Gallus gallus miR-1804
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaagt 6
||||||
Sbjct: 3 agaagt 8
>oan-miR-1418-5p MIMAT0007276 Ornithorhynchus anatinus
miR-1418-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaagtt 7
||||||
Sbjct: 7 gaagtt 2
>oan-miR-1421f-5p MIMAT0006973 Ornithorhynchus anatinus
miR-1421f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 3 gaagtt 8
>mmu-miR-495-5p MIMAT0017249 Mus musculus miR-495-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>rno-miR-382-5p MIMAT0003201 Rattus norvegicus miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>hsa-miR-495-5p MIMAT0022924 Homo sapiens miR-495-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>mmu-miR-382-5p MIMAT0000747 Mus musculus miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>hsa-miR-382-5p MIMAT0000737 Homo sapiens miR-382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>mmu-miR-148b-5p MIMAT0017036 Mus musculus miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
>rno-miR-148b-5p MIMAT0004645 Rattus norvegicus miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaagtt 7
||||||
Sbjct: 1 gaagtt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 85
Number of extensions: 77
Number of successful extensions: 66
Number of sequences better than 100.0: 66
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 66
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
