BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-4-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
egr-miR-124b-5p MIMAT0020241 Echinococcus granulosus miR-124b-5p 14 20
ppy-miR-630 MIMAT0016069 Pongo pygmaeus miR-630 14 20
ptr-miR-630 MIMAT0008288 Pan troglodytes miR-630 14 20
hsa-miR-630 MIMAT0003299 Homo sapiens miR-630 14 20
kshv-miR-K12-4-3p MIMAT0002192 Kaposi sarcoma-associated miR-K12... 14 20
oha-miR-26-3-3p MIMAT0036864 Ophiophagus hannah miR-26-3-3p 12 80
chi-miR-26a-3p MIMAT0036102 Capra hircus miR-26a-3p 12 80
dvi-miR-9547-3p MIMAT0035635 Drosophila virilis miR-9547-3p 12 80
dvi-miR-964-5p MIMAT0035583 Drosophila virilis miR-964-5p 12 80
str-miR-8373-5p MIMAT0033382 Strongyloides ratti miR-8373-5p 12 80
str-miR-5359-3p MIMAT0033353 Strongyloides ratti miR-5359-3p 12 80
ppc-miR-8317b-3p MIMAT0033173 Pristionchus pacificus miR-8317b-3p 12 80
ssa-miR-8161-5p MIMAT0032748 Salmo salar miR-8161-5p 12 80
ssa-miR-8160-5p MIMAT0032746 Salmo salar miR-8160-5p 12 80
ssa-miR-26b-3p MIMAT0032570 Salmo salar miR-26b-3p 12 80
ssa-miR-26a-4-3p MIMAT0032566 Salmo salar miR-26a-4-3p 12 80
ssa-miR-26a-3p MIMAT0032564 Salmo salar miR-26a-3p 12 80
hsa-miR-8084 MIMAT0031011 Homo sapiens miR-8084 12 80
stu-miR8014-3p MIMAT0030910 Solanum tuberosum miR8014-3p 12 80
prd-miR-234-5p MIMAT0030792 Panagrellus redivivus miR-234-5p 12 80
oan-miR-7423-5p MIMAT0028996 Ornithorhynchus anatinus miR-7423-5p 12 80
hsa-miR-6507-5p MIMAT0025470 Homo sapiens miR-6507-5p 12 80
hsa-miR-6082 MIMAT0023707 Homo sapiens miR-6082 12 80
sha-miR-26a MIMAT0022828 Sarcophilus harrisii miR-26a 12 80
tur-miR-137-5p MIMAT0023098 Tetranychus urticae miR-137-5p 12 80
asu-miR-228-3p MIMAT0021504 Ascaris suum miR-228-3p 12 80
asu-miR-234-5p MIMAT0021499 Ascaris suum miR-234-5p 12 80
tca-miR-3813-5p MIMAT0018648 Tribolium castaneum miR-3813-5p 12 80
cin-miR-4185-3p MIMAT0016803 Ciona intestinalis miR-4185-3p 12 80
cin-miR-4155-3p MIMAT0016760 Ciona intestinalis miR-4155-3p 12 80
cin-miR-125-3p MIMAT0016406 Ciona intestinalis miR-125-3p 12 80
sja-miR-3507 MIMAT0016316 Schistosoma japonicum miR-3507 12 80
bmo-miR-3381-3p MIMAT0015574 Bombyx mori miR-3381-3p 12 80
api-miR-3018 MIMAT0014754 Acyrthosiphon pisum miR-3018 12 80
tgu-miR-26-3p MIMAT0026980 Taeniopygia guttata miR-26-3p 12 80
mdo-miR-26-3-3p MIMAT0031030 Monodelphis domestica miR-26-3-3p 12 80
bmo-miR-2800 MIMAT0013704 Bombyx mori miR-2800 12 80
mtr-miR2634 MIMAT0013400 Medicago truncatula miR2634 12 80
dsi-miR-964-5p MIMAT0012475 Drosophila simulans miR-964-5p 12 80
nve-miR-2024f-5p MIMAT0009768 Nematostella vectensis miR-2024f-5p 12 80
nve-miR-2024d MIMAT0009765 Nematostella vectensis miR-2024d 12 80
nve-miR-2024c-5p MIMAT0009763 Nematostella vectensis miR-2024c-5p 12 80
dvi-miR-6-1-5p MIMAT0032090 Drosophila virilis miR-6-1-5p 12 80
mml-miR-26a-2-3p MIMAT0031062 Macaca mulatta miR-26a-2-3p 12 80
cel-miR-1020-3p MIMAT0005033 Caenorhabditis elegans miR-1020-3p 12 80
dme-miR-964-5p MIMAT0005478 Drosophila melanogaster miR-964-5p 12 80
sme-miR-277a-5p MIMAT0012119 Schmidtea mediterranea miR-277a-5p 12 80
mml-miR-26a-1-3p MIMAT0026574 Macaca mulatta miR-26a-1-3p 12 80
gga-miR-26a-3p MIMAT0026501 Gallus gallus miR-26a-3p 12 80
rno-miR-26a-3p MIMAT0017100 Rattus norvegicus miR-26a-3p 12 80
hsa-miR-26a-2-3p MIMAT0004681 Homo sapiens miR-26a-2-3p 12 80
mmu-miR-26a-1-3p MIMAT0017020 Mus musculus miR-26a-1-3p 12 80
cel-miR-234-5p MIMAT0020330 Caenorhabditis elegans miR-234-5p 12 80
hsa-miR-26a-1-3p MIMAT0004499 Homo sapiens miR-26a-1-3p 12 80
>egr-miR-124b-5p MIMAT0020241 Echinococcus granulosus
miR-124b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaatac 7
|||||||
Sbjct: 7 agaatac 1
>ppy-miR-630 MIMAT0016069 Pongo pygmaeus miR-630
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaatac 7
|||||||
Sbjct: 8 agaatac 2
>ptr-miR-630 MIMAT0008288 Pan troglodytes miR-630
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaatac 7
|||||||
Sbjct: 8 agaatac 2
>hsa-miR-630 MIMAT0003299 Homo sapiens miR-630
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaatac 7
|||||||
Sbjct: 8 agaatac 2
>kshv-miR-K12-4-3p MIMAT0002192 Kaposi sarcoma-associated
miR-K12-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaatac 7
|||||||
Sbjct: 2 agaatac 8
>oha-miR-26-3-3p MIMAT0036864 Ophiophagus hannah miR-26-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>chi-miR-26a-3p MIMAT0036102 Capra hircus miR-26a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>dvi-miR-9547-3p MIMAT0035635 Drosophila virilis miR-9547-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaatac 7
||||||
Sbjct: 8 gaatac 3
>dvi-miR-964-5p MIMAT0035583 Drosophila virilis miR-964-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 3 agaata 8
>str-miR-8373-5p MIMAT0033382 Strongyloides ratti miR-8373-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 1 agaata 6
>str-miR-5359-3p MIMAT0033353 Strongyloides ratti miR-5359-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 3 agaata 8
>ppc-miR-8317b-3p MIMAT0033173 Pristionchus pacificus
miR-8317b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaatac 7
||||||
Sbjct: 1 gaatac 6
>ssa-miR-8161-5p MIMAT0032748 Salmo salar miR-8161-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 1 agaata 6
>ssa-miR-8160-5p MIMAT0032746 Salmo salar miR-8160-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 1 agaata 6
>ssa-miR-26b-3p MIMAT0032570 Salmo salar miR-26b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>ssa-miR-26a-4-3p MIMAT0032566 Salmo salar miR-26a-4-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>ssa-miR-26a-3p MIMAT0032564 Salmo salar miR-26a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>hsa-miR-8084 MIMAT0031011 Homo sapiens miR-8084
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaatac 7
||||||
Sbjct: 1 gaatac 6
>stu-miR8014-3p MIMAT0030910 Solanum tuberosum miR8014-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaatac 7
||||||
Sbjct: 3 gaatac 8
>prd-miR-234-5p MIMAT0030792 Panagrellus redivivus miR-234-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaatac 7
||||||
Sbjct: 8 gaatac 3
>oan-miR-7423-5p MIMAT0028996 Ornithorhynchus anatinus
miR-7423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 6 agaata 1
>hsa-miR-6507-5p MIMAT0025470 Homo sapiens miR-6507-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 3 agaata 8
>hsa-miR-6082 MIMAT0023707 Homo sapiens miR-6082
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gaatac 7
||||||
Sbjct: 1 gaatac 6
>sha-miR-26a MIMAT0022828 Sarcophilus harrisii miR-26a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>tur-miR-137-5p MIMAT0023098 Tetranychus urticae miR-137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaatac 7
||||||
Sbjct: 8 gaatac 3
>asu-miR-228-3p MIMAT0021504 Ascaris suum miR-228-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaatac 7
||||||
Sbjct: 7 gaatac 2
>asu-miR-234-5p MIMAT0021499 Ascaris suum miR-234-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaatac 7
||||||
Sbjct: 8 gaatac 3
>tca-miR-3813-5p MIMAT0018648 Tribolium castaneum miR-3813-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 6 agaata 1
>cin-miR-4185-3p MIMAT0016803 Ciona intestinalis miR-4185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaatac 7
||||||
Sbjct: 7 gaatac 2
>cin-miR-4155-3p MIMAT0016760 Ciona intestinalis miR-4155-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 6 agaata 1
>cin-miR-125-3p MIMAT0016406 Ciona intestinalis miR-125-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaatac 7
||||||
Sbjct: 8 gaatac 3
>sja-miR-3507 MIMAT0016316 Schistosoma japonicum miR-3507
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 3 agaata 8
>bmo-miR-3381-3p MIMAT0015574 Bombyx mori miR-3381-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaatac 7
||||||
Sbjct: 6 gaatac 1
>api-miR-3018 MIMAT0014754 Acyrthosiphon pisum miR-3018
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 3 agaata 8
>tgu-miR-26-3p MIMAT0026980 Taeniopygia guttata miR-26-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>mdo-miR-26-3-3p MIMAT0031030 Monodelphis domestica miR-26-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>bmo-miR-2800 MIMAT0013704 Bombyx mori miR-2800
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 1 agaata 6
>mtr-miR2634 MIMAT0013400 Medicago truncatula miR2634
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>dsi-miR-964-5p MIMAT0012475 Drosophila simulans miR-964-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 3 agaata 8
>nve-miR-2024f-5p MIMAT0009768 Nematostella vectensis
miR-2024f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 1 agaata 6
>nve-miR-2024d MIMAT0009765 Nematostella vectensis miR-2024d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 1 agaata 6
>nve-miR-2024c-5p MIMAT0009763 Nematostella vectensis
miR-2024c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 1 agaata 6
>dvi-miR-6-1-5p MIMAT0032090 Drosophila virilis miR-6-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 3 agaata 8
>mml-miR-26a-2-3p MIMAT0031062 Macaca mulatta miR-26a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>cel-miR-1020-3p MIMAT0005033 Caenorhabditis elegans miR-1020-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>dme-miR-964-5p MIMAT0005478 Drosophila melanogaster miR-964-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaata 6
||||||
Sbjct: 3 agaata 8
>sme-miR-277a-5p MIMAT0012119 Schmidtea mediterranea miR-277a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaatac 7
||||||
Sbjct: 8 gaatac 3
>mml-miR-26a-1-3p MIMAT0026574 Macaca mulatta miR-26a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>gga-miR-26a-3p MIMAT0026501 Gallus gallus miR-26a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>rno-miR-26a-3p MIMAT0017100 Rattus norvegicus miR-26a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>hsa-miR-26a-2-3p MIMAT0004681 Homo sapiens miR-26a-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>mmu-miR-26a-1-3p MIMAT0017020 Mus musculus miR-26a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
>cel-miR-234-5p MIMAT0020330 Caenorhabditis elegans miR-234-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gaatac 7
||||||
Sbjct: 8 gaatac 3
>hsa-miR-26a-1-3p MIMAT0004499 Homo sapiens miR-26a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaata 6
||||||
Sbjct: 8 agaata 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 67
Number of extensions: 62
Number of successful extensions: 54
Number of sequences better than 100.0: 54
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 54
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
