BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-12-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bmo-miR-3357 MIMAT0015543 Bombyx mori miR-3357 16 6.9
rlcv-miR-rL1-12-5p MIMAT0003441 Rhesus lymphocryptovirus miR-rL1... 16 6.9
hsa-miR-7152-3p MIMAT0028215 Homo sapiens miR-7152-3p 14 27
ssc-miR-7136-5p MIMAT0028147 Sus scrofa miR-7136-5p 14 27
pde-miR950 MIMAT0025342 Pinus densata miR950 14 27
rno-miR-6326 MIMAT0025065 Rattus norvegicus miR-6326 14 27
asu-miR-791-5p MIMAT0021529 Ascaris suum miR-791-5p 14 27
tca-miR-3876-3p MIMAT0018845 Tribolium castaneum miR-3876-3p 14 27
hsa-miR-3663-5p MIMAT0018084 Homo sapiens miR-3663-5p 14 27
mmu-miR-1934-5p MIMAT0009398 Mus musculus miR-1934-5p 14 27
>bmo-miR-3357 MIMAT0015543 Bombyx mori miR-3357
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 agaccaga 8
||||||||
Sbjct: 8 agaccaga 1
>rlcv-miR-rL1-12-5p MIMAT0003441 Rhesus lymphocryptovirus
miR-rL1-12-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agaccaga 8
||||||||
Sbjct: 1 agaccaga 8
>hsa-miR-7152-3p MIMAT0028215 Homo sapiens miR-7152-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaccaga 8
|||||||
Sbjct: 7 gaccaga 1
>ssc-miR-7136-5p MIMAT0028147 Sus scrofa miR-7136-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaccaga 8
|||||||
Sbjct: 7 gaccaga 1
>pde-miR950 MIMAT0025342 Pinus densata miR950
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaccaga 8
|||||||
Sbjct: 7 gaccaga 1
>rno-miR-6326 MIMAT0025065 Rattus norvegicus miR-6326
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaccag 7
|||||||
Sbjct: 7 agaccag 1
>asu-miR-791-5p MIMAT0021529 Ascaris suum miR-791-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaccag 7
|||||||
Sbjct: 7 agaccag 1
>tca-miR-3876-3p MIMAT0018845 Tribolium castaneum miR-3876-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agaccag 7
|||||||
Sbjct: 2 agaccag 8
>hsa-miR-3663-5p MIMAT0018084 Homo sapiens miR-3663-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agaccag 7
|||||||
Sbjct: 8 agaccag 2
>mmu-miR-1934-5p MIMAT0009398 Mus musculus miR-1934-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaccaga 8
|||||||
Sbjct: 7 gaccaga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 116
Number of extensions: 104
Number of successful extensions: 77
Number of sequences better than 100.0: 10
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
