BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h27
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv1-miR-H27 MIMAT0031152 Herpes Simplex miR-H27 14 20
oar-miR-665-5p MIMAT0019239 Ovis aries miR-665-5p 14 20
hsv2-miR-H22 MIMAT0014704 Herpes Simplex miR-H22 14 20
sko-miR-365-5p MIMAT0019159 Saccoglossus kowalevskii miR-365-5p 14 20
mghv-miR-M1-2-3p MIMAT0001565 Mouse gammaherpesvirus miR-M1-2-3p 14 20
tch-miR-504 MIMAT0036605 Tupaia chinensis miR-504 12 80
mmu-miR-9769-3p MIMAT0036462 Mus musculus miR-9769-3p 12 80
chi-miR-504 MIMAT0036268 Capra hircus miR-504 12 80
dvi-miR-965-5p MIMAT0035584 Drosophila virilis miR-965-5p 12 80
efu-miR-504 MIMAT0035199 Eptesicus fuscus miR-504 12 80
efu-miR-9208 MIMAT0034798 Eptesicus fuscus miR-9208 12 80
str-miR-81a-5p MIMAT0033331 Strongyloides ratti miR-81a-5p 12 80
mmu-miR-7009-5p MIMAT0027922 Mus musculus miR-7009-5p 12 80
cgr-miR-504 MIMAT0023978 Cricetulus griseus miR-504 12 80
rgl-miR5141 MIMAT0020652 Rehmannia glutinosa miR5141 12 80
hsa-miR-4725-5p MIMAT0019843 Homo sapiens miR-4725-5p 12 80
hsa-miR-3667-5p MIMAT0018089 Homo sapiens miR-3667-5p 12 80
ppy-miR-504 MIMAT0015927 Pongo pygmaeus miR-504 12 80
ssc-miR-504 MIMAT0013931 Sus scrofa miR-504 12 80
eca-miR-504 MIMAT0013228 Equus caballus miR-504 12 80
rno-miR-504 MIMAT0012830 Rattus norvegicus miR-504 12 80
dps-miR-965-5p MIMAT0012249 Drosophila pseudoobscura miR-965-5p 12 80
cfa-miR-504 MIMAT0009907 Canis familiaris miR-504 12 80
bta-miR-504 MIMAT0009340 Bos taurus miR-504 12 80
ptr-miR-504 MIMAT0008177 Pan troglodytes miR-504 12 80
ptr-miR-1182 MIMAT0007950 Pan troglodytes miR-1182 12 80
mml-miR-504-5p MIMAT0006368 Macaca mulatta miR-504-5p 12 80
gga-miR-1761 MIMAT0007668 Gallus gallus miR-1761 12 80
oan-miR-1414-5p MIMAT0007255 Ornithorhynchus anatinus miR-1414-5p 12 80
oan-miR-1421g-5p MIMAT0006975 Ornithorhynchus anatinus miR-1421g-5p 12 80
mml-miR-1232 MIMAT0005587 Macaca mulatta miR-1232 12 80
hsa-miR-1182 MIMAT0005827 Homo sapiens miR-1182 12 80
mmu-miR-504-5p MIMAT0004889 Mus musculus miR-504-5p 12 80
hsa-miR-504-5p MIMAT0002875 Homo sapiens miR-504-5p 12 80
>hsv1-miR-H27 MIMAT0031152 Herpes Simplex miR-H27
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agacccc 7
|||||||
Sbjct: 2 agacccc 8
>oar-miR-665-5p MIMAT0019239 Ovis aries miR-665-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agacccc 7
|||||||
Sbjct: 8 agacccc 2
>hsv2-miR-H22 MIMAT0014704 Herpes Simplex miR-H22
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agacccc 7
|||||||
Sbjct: 8 agacccc 2
>sko-miR-365-5p MIMAT0019159 Saccoglossus kowalevskii miR-365-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agacccc 7
|||||||
Sbjct: 8 agacccc 2
>mghv-miR-M1-2-3p MIMAT0001565 Mouse gammaherpesvirus
miR-M1-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agacccc 7
|||||||
Sbjct: 2 agacccc 8
>tch-miR-504 MIMAT0036605 Tupaia chinensis miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>mmu-miR-9769-3p MIMAT0036462 Mus musculus miR-9769-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaccc 6
||||||
Sbjct: 8 agaccc 3
>chi-miR-504 MIMAT0036268 Capra hircus miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>dvi-miR-965-5p MIMAT0035584 Drosophila virilis miR-965-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacccc 7
||||||
Sbjct: 6 gacccc 1
>efu-miR-504 MIMAT0035199 Eptesicus fuscus miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>efu-miR-9208 MIMAT0034798 Eptesicus fuscus miR-9208
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacccc 7
||||||
Sbjct: 1 gacccc 6
>str-miR-81a-5p MIMAT0033331 Strongyloides ratti miR-81a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaccc 6
||||||
Sbjct: 8 agaccc 3
>mmu-miR-7009-5p MIMAT0027922 Mus musculus miR-7009-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacccc 7
||||||
Sbjct: 8 gacccc 3
>cgr-miR-504 MIMAT0023978 Cricetulus griseus miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>rgl-miR5141 MIMAT0020652 Rehmannia glutinosa miR5141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>hsa-miR-4725-5p MIMAT0019843 Homo sapiens miR-4725-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>hsa-miR-3667-5p MIMAT0018089 Homo sapiens miR-3667-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 3 agaccc 8
>ppy-miR-504 MIMAT0015927 Pongo pygmaeus miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>ssc-miR-504 MIMAT0013931 Sus scrofa miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>eca-miR-504 MIMAT0013228 Equus caballus miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>rno-miR-504 MIMAT0012830 Rattus norvegicus miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>dps-miR-965-5p MIMAT0012249 Drosophila pseudoobscura miR-965-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacccc 7
||||||
Sbjct: 6 gacccc 1
>cfa-miR-504 MIMAT0009907 Canis familiaris miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>bta-miR-504 MIMAT0009340 Bos taurus miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>ptr-miR-504 MIMAT0008177 Pan troglodytes miR-504
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>ptr-miR-1182 MIMAT0007950 Pan troglodytes miR-1182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaccc 6
||||||
Sbjct: 8 agaccc 3
>mml-miR-504-5p MIMAT0006368 Macaca mulatta miR-504-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>gga-miR-1761 MIMAT0007668 Gallus gallus miR-1761
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacccc 7
||||||
Sbjct: 8 gacccc 3
>oan-miR-1414-5p MIMAT0007255 Ornithorhynchus anatinus
miR-1414-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacccc 7
||||||
Sbjct: 7 gacccc 2
>oan-miR-1421g-5p MIMAT0006975 Ornithorhynchus anatinus
miR-1421g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacccc 7
||||||
Sbjct: 8 gacccc 3
>mml-miR-1232 MIMAT0005587 Macaca mulatta miR-1232
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacccc 7
||||||
Sbjct: 3 gacccc 8
>hsa-miR-1182 MIMAT0005827 Homo sapiens miR-1182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agaccc 6
||||||
Sbjct: 8 agaccc 3
>mmu-miR-504-5p MIMAT0004889 Mus musculus miR-504-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
>hsa-miR-504-5p MIMAT0002875 Homo sapiens miR-504-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agaccc 6
||||||
Sbjct: 1 agaccc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 82
Number of extensions: 77
Number of successful extensions: 34
Number of sequences better than 100.0: 34
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
