BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= iltv-miR-i1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mml-miR-873-3p MIMAT0027106 Macaca mulatta miR-873-3p 16 6.9
iltv-miR-I1-5p MIMAT0012723 Infectious laryngotracheitis miR-I1-5p 16 6.9
rno-miR-452-3p MIMAT0035749 Rattus norvegicus miR-452-3p 14 27
efu-miR-452 MIMAT0034893 Eptesicus fuscus miR-452 14 27
eca-miR-9120 MIMAT0034669 Equus caballus miR-9120 14 27
pxy-miR-8529 MIMAT0033771 Plutella xylostella miR-8529 14 27
pxy-miR-8511 MIMAT0033739 Plutella xylostella miR-8511 14 27
sma-miR-8417-5p MIMAT0033538 Schistosoma mansoni miR-8417-5p 14 27
ppc-miR-8271-5p MIMAT0033035 Pristionchus pacificus miR-8271-5p 14 27
ssa-miR-727-5p MIMAT0032675 Salmo salar miR-727-5p 14 27
ssa-miR-29b-2-5p MIMAT0032587 Salmo salar miR-29b-2-5p 14 27
mmu-miR-3569-3p MIMAT0029855 Mus musculus miR-3569-3p 14 27
ccr-miR-727-5p MIMAT0026314 Cyprinus carpio miR-727-5p 14 27
hsa-miR-6855-3p MIMAT0027611 Homo sapiens miR-6855-3p 14 27
hme-miR-6302-1-5p MIMAT0025006 Heliconius melpomene miR-6302-1-5p 14 27
hme-miR-14 MIMAT0024942 Heliconius melpomene miR-14 14 27
mse-miR-2766 MIMAT0024482 Manduca sexta miR-2766 14 27
mse-miR-14 MIMAT0024463 Manduca sexta miR-14 14 27
aca-miR-727-5p MIMAT0021987 Anolis carolinensis miR-727-5p 14 27
hsa-miR-4513 MIMAT0019050 Homo sapiens miR-4513 14 27
hsa-miR-4499 MIMAT0019035 Homo sapiens miR-4499 14 27
ngi-miR-14 MIMAT0018389 Nasonia giraulti miR-14 14 27
nvi-miR-14 MIMAT0015655 Nasonia vitripennis miR-14 14 27
bmo-miR-3368 MIMAT0015554 Bombyx mori miR-3368 14 27
api-miR-14 MIMAT0014714 Acyrthosiphon pisum miR-14 14 27
cqu-miR-14 MIMAT0014416 Culex quinquefasciatus miR-14 14 27
aae-miR-14 MIMAT0014240 Aedes aegypti miR-14 14 27
bmo-miR-2766-3p MIMAT0013642 Bombyx mori miR-2766-3p 14 27
bta-miR-2298 MIMAT0011806 Bos taurus miR-2298 14 27
dya-miR-14 MIMAT0009076 Drosophila yakuba miR-14 14 27
dwi-miR-14 MIMAT0009043 Drosophila willistoni miR-14 14 27
dvi-miR-14-3p MIMAT0008971 Drosophila virilis miR-14-3p 14 27
dsi-miR-14 MIMAT0008848 Drosophila simulans miR-14 14 27
dse-miR-14 MIMAT0008813 Drosophila sechellia miR-14 14 27
dpe-miR-14 MIMAT0008703 Drosophila persimilis miR-14 14 27
dmo-miR-14 MIMAT0008632 Drosophila mojavensis miR-14 14 27
dgr-miR-14 MIMAT0008602 Drosophila grimshawi miR-14 14 27
der-miR-14 MIMAT0008498 Drosophila erecta miR-14 14 27
dan-miR-14 MIMAT0008460 Drosophila ananassae miR-14 14 27
tca-miR-14-3p MIMAT0008361 Tribolium castaneum miR-14-3p 14 27
rno-miR-873-3p MIMAT0017318 Rattus norvegicus miR-873-3p 14 27
ame-miR-14 MIMAT0004423 Apis mellifera miR-14 14 27
mmu-miR-873a-3p MIMAT0017279 Mus musculus miR-873a-3p 14 27
bmo-miR-14-3p MIMAT0004196 Bombyx mori miR-14-3p 14 27
dre-miR-727-5p MIMAT0003755 Danio rerio miR-727-5p 14 27
mmu-miR-468-5p MIMAT0022699 Mus musculus miR-468-5p 14 27
mmu-miR-452-3p MIMAT0017194 Mus musculus miR-452-3p 14 27
aga-miR-14 MIMAT0001503 Anopheles gambiae miR-14 14 27
dps-miR-14 MIMAT0001219 Drosophila pseudoobscura miR-14 14 27
dme-miR-14-3p MIMAT0000120 Drosophila melanogaster miR-14-3p 14 27
>mml-miR-873-3p MIMAT0027106 Macaca mulatta miR-873-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agactgat 8
||||||||
Sbjct: 1 agactgat 8
>iltv-miR-I1-5p MIMAT0012723 Infectious laryngotracheitis
miR-I1-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agactgat 8
||||||||
Sbjct: 1 agactgat 8
>rno-miR-452-3p MIMAT0035749 Rattus norvegicus miR-452-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>efu-miR-452 MIMAT0034893 Eptesicus fuscus miR-452
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>eca-miR-9120 MIMAT0034669 Equus caballus miR-9120
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>pxy-miR-8529 MIMAT0033771 Plutella xylostella miR-8529
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>pxy-miR-8511 MIMAT0033739 Plutella xylostella miR-8511
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>sma-miR-8417-5p MIMAT0033538 Schistosoma mansoni miR-8417-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>ppc-miR-8271-5p MIMAT0033035 Pristionchus pacificus miR-8271-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gactgat 8
|||||||
Sbjct: 8 gactgat 2
>ssa-miR-727-5p MIMAT0032675 Salmo salar miR-727-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>ssa-miR-29b-2-5p MIMAT0032587 Salmo salar miR-29b-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gactgat 8
|||||||
Sbjct: 2 gactgat 8
>mmu-miR-3569-3p MIMAT0029855 Mus musculus miR-3569-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>ccr-miR-727-5p MIMAT0026314 Cyprinus carpio miR-727-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>hsa-miR-6855-3p MIMAT0027611 Homo sapiens miR-6855-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agactga 7
|||||||
Sbjct: 1 agactga 7
>hme-miR-6302-1-5p MIMAT0025006 Heliconius melpomene
miR-6302-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agactga 7
|||||||
Sbjct: 1 agactga 7
>hme-miR-14 MIMAT0024942 Heliconius melpomene miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>mse-miR-2766 MIMAT0024482 Manduca sexta miR-2766
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>mse-miR-14 MIMAT0024463 Manduca sexta miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>aca-miR-727-5p MIMAT0021987 Anolis carolinensis miR-727-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>hsa-miR-4513 MIMAT0019050 Homo sapiens miR-4513
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agactga 7
|||||||
Sbjct: 1 agactga 7
>hsa-miR-4499 MIMAT0019035 Homo sapiens miR-4499
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agactga 7
|||||||
Sbjct: 2 agactga 8
>ngi-miR-14 MIMAT0018389 Nasonia giraulti miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>nvi-miR-14 MIMAT0015655 Nasonia vitripennis miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>bmo-miR-3368 MIMAT0015554 Bombyx mori miR-3368
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>api-miR-14 MIMAT0014714 Acyrthosiphon pisum miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>cqu-miR-14 MIMAT0014416 Culex quinquefasciatus miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>aae-miR-14 MIMAT0014240 Aedes aegypti miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>bmo-miR-2766-3p MIMAT0013642 Bombyx mori miR-2766-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>bta-miR-2298 MIMAT0011806 Bos taurus miR-2298
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gactgat 8
|||||||
Sbjct: 1 gactgat 7
>dya-miR-14 MIMAT0009076 Drosophila yakuba miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dwi-miR-14 MIMAT0009043 Drosophila willistoni miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dvi-miR-14-3p MIMAT0008971 Drosophila virilis miR-14-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dsi-miR-14 MIMAT0008848 Drosophila simulans miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dse-miR-14 MIMAT0008813 Drosophila sechellia miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dpe-miR-14 MIMAT0008703 Drosophila persimilis miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dmo-miR-14 MIMAT0008632 Drosophila mojavensis miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dgr-miR-14 MIMAT0008602 Drosophila grimshawi miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>der-miR-14 MIMAT0008498 Drosophila erecta miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dan-miR-14 MIMAT0008460 Drosophila ananassae miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>tca-miR-14-3p MIMAT0008361 Tribolium castaneum miR-14-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>rno-miR-873-3p MIMAT0017318 Rattus norvegicus miR-873-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agactga 7
|||||||
Sbjct: 2 agactga 8
>ame-miR-14 MIMAT0004423 Apis mellifera miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>mmu-miR-873a-3p MIMAT0017279 Mus musculus miR-873a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agactga 7
|||||||
Sbjct: 2 agactga 8
>bmo-miR-14-3p MIMAT0004196 Bombyx mori miR-14-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dre-miR-727-5p MIMAT0003755 Danio rerio miR-727-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>mmu-miR-468-5p MIMAT0022699 Mus musculus miR-468-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gactgat 8
|||||||
Sbjct: 1 gactgat 7
>mmu-miR-452-3p MIMAT0017194 Mus musculus miR-452-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>aga-miR-14 MIMAT0001503 Anopheles gambiae miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dps-miR-14 MIMAT0001219 Drosophila pseudoobscura miR-14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
>dme-miR-14-3p MIMAT0000120 Drosophila melanogaster miR-14-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agactga 7
|||||||
Sbjct: 7 agactga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 244
Number of extensions: 192
Number of successful extensions: 160
Number of sequences better than 100.0: 50
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 50
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
