BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prv-miR-8-loop
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bra-miR9561-3p MIMAT0035678 Brassica rapa miR9561-3p                   14      20
mdo-miR-7344-5p MIMAT0028698 Monodelphis domestica miR-7344-5p         14      20
mmu-miR-6898-3p MIMAT0027697 Mus musculus miR-6898-3p                  14      20
gga-miR-6577-3p MIMAT0025662 Gallus gallus miR-6577-3p                 14      20
osa-miR1863b.2 MIMAT0020950 Oryza sativa miR1863b.2                    14      20
dps-miR-980-5p MIMAT0012223 Drosophila pseudoobscura miR-980-5p        14      20
rno-miR-452-3p MIMAT0035749 Rattus norvegicus miR-452-3p               12      80
bra-miR9561-5p MIMAT0035677 Brassica rapa miR9561-5p                   12      80
nve-miR-9427 MIMAT0035386 Nematostella vectensis miR-9427              12      80
efu-miR-452 MIMAT0034893 Eptesicus fuscus miR-452                      12      80
efu-miR-9214 MIMAT0034805 Eptesicus fuscus miR-9214                    12      80
eca-miR-9120 MIMAT0034669 Equus caballus miR-9120                      12      80
gra-miR8687 MIMAT0034060 Gossypium raimondii miR8687                   12      80
pxy-miR-8529 MIMAT0033771 Plutella xylostella miR-8529                 12      80
cel-miR-8202-3p MIMAT0032818 Caenorhabditis elegans miR-8202-3p        12      80
stu-miR169c-3p MIMAT0031364 Solanum tuberosum miR169c-3p               12      80
stu-miR169b-3p MIMAT0031362 Solanum tuberosum miR169b-3p               12      80
stu-miR169a-3p MIMAT0031360 Solanum tuberosum miR169a-3p               12      80
bdi-miR7713-3p MIMAT0030149 Brachypodium distachyon miR7713-3p         12      80
lja-miR7516-3p MIMAT0029329 Lotus japonicus miR7516-3p                 12      80
gga-miR-7463-5p MIMAT0029080 Gallus gallus miR-7463-5p                 12      80
mml-miR-7174-3p MIMAT0028287 Macaca mulatta miR-7174-3p                12      80
hsa-miR-6864-3p MIMAT0027629 Homo sapiens miR-6864-3p                  12      80
hsa-miR-6818-3p MIMAT0027537 Homo sapiens miR-6818-3p                  12      80
gga-miR-6696-3p MIMAT0025803 Gallus gallus miR-6696-3p                 12      80
gga-miR-6571-3p MIMAT0025650 Gallus gallus miR-6571-3p                 12      80
mmu-miR-6397 MIMAT0025149 Mus musculus miR-6397                        12      80
hme-miR-6312-5p MIMAT0025019 Heliconius melpomene miR-6312-5p          12      80
hco-miR-5918a MIMAT0023391 Haemonchus contortus miR-5918a              12      80
sha-miR-340 MIMAT0022775 Sarcophilus harrisii miR-340                  12      80
pti-miR5480 MIMAT0022113 Phaeodactylum tricornutum miR5480             12      80
mtr-miR5218 MIMAT0021176 Medicago truncatula miR5218                   12      80
pma-miR-4579 MIMAT0019612 Petromyzon marinus miR-4579                  12      80
hsa-miR-4474-5p MIMAT0019234 Homo sapiens miR-4474-5p                  12      80
hsa-miR-4463 MIMAT0018987 Homo sapiens miR-4463                        12      80
hsa-miR-3672 MIMAT0018095 Homo sapiens miR-3672                        12      80
bmo-miR-3219 MIMAT0015399 Bombyx mori miR-3219                         12      80
hsa-miR-3184-3p MIMAT0022731 Homo sapiens miR-3184-3p                  12      80
mmu-miR-3108-5p MIMAT0014947 Mus musculus miR-3108-5p                  12      80
dps-miR-2546-3p MIMAT0012353 Drosophila pseudoobscura miR-2546-3p      12      80
mml-miR-452-3p MIMAT0026879 Macaca mulatta miR-452-3p                  12      80
oan-miR-873-3p MIMAT0007273 Ornithorhynchus anatinus miR-873-3p        12      80
rno-miR-873-3p MIMAT0017318 Rattus norvegicus miR-873-3p               12      80
ppt-miR1065 MIMAT0005192 Physcomitrella patens miR1065                 12      80
mmu-miR-873a-3p MIMAT0017279 Mus musculus miR-873a-3p                  12      80
mmu-miR-452-3p MIMAT0017194 Mus musculus miR-452-3p                    12      80
>bra-miR9561-3p MIMAT0035678 Brassica rapa miR9561-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagact 7
         |||||||
Sbjct: 2 agagact 8
>mdo-miR-7344-5p MIMAT0028698 Monodelphis domestica miR-7344-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagact 7
         |||||||
Sbjct: 8 agagact 2
>mmu-miR-6898-3p MIMAT0027697 Mus musculus miR-6898-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagact 7
         |||||||
Sbjct: 8 agagact 2
>gga-miR-6577-3p MIMAT0025662 Gallus gallus miR-6577-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagact 7
         |||||||
Sbjct: 1 agagact 7
>osa-miR1863b.2 MIMAT0020950 Oryza sativa miR1863b.2
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagact 7
         |||||||
Sbjct: 1 agagact 7
>dps-miR-980-5p MIMAT0012223 Drosophila pseudoobscura miR-980-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagact 7
         |||||||
Sbjct: 7 agagact 1
>rno-miR-452-3p MIMAT0035749 Rattus norvegicus miR-452-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>bra-miR9561-5p MIMAT0035677 Brassica rapa miR9561-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>nve-miR-9427 MIMAT0035386 Nematostella vectensis miR-9427
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagac 6
         ||||||
Sbjct: 1 agagac 6
>efu-miR-452 MIMAT0034893 Eptesicus fuscus miR-452
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>efu-miR-9214 MIMAT0034805 Eptesicus fuscus miR-9214
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagac 6
         ||||||
Sbjct: 6 agagac 1
>eca-miR-9120 MIMAT0034669 Equus caballus miR-9120
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>gra-miR8687 MIMAT0034060 Gossypium raimondii miR8687
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagac 6
         ||||||
Sbjct: 1 agagac 6
>pxy-miR-8529 MIMAT0033771 Plutella xylostella miR-8529
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>cel-miR-8202-3p MIMAT0032818 Caenorhabditis elegans miR-8202-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagac 6
         ||||||
Sbjct: 1 agagac 6
>stu-miR169c-3p MIMAT0031364 Solanum tuberosum miR169c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>stu-miR169b-3p MIMAT0031362 Solanum tuberosum miR169b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>stu-miR169a-3p MIMAT0031360 Solanum tuberosum miR169a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>bdi-miR7713-3p MIMAT0030149 Brachypodium distachyon miR7713-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 3 gagact 8
>lja-miR7516-3p MIMAT0029329 Lotus japonicus miR7516-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagac 6
         ||||||
Sbjct: 1 agagac 6
>gga-miR-7463-5p MIMAT0029080 Gallus gallus miR-7463-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>mml-miR-7174-3p MIMAT0028287 Macaca mulatta miR-7174-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 6 gagact 1
>hsa-miR-6864-3p MIMAT0027629 Homo sapiens miR-6864-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 3 gagact 8
>hsa-miR-6818-3p MIMAT0027537 Homo sapiens miR-6818-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagac 6
         ||||||
Sbjct: 8 agagac 3
>gga-miR-6696-3p MIMAT0025803 Gallus gallus miR-6696-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 3 gagact 8
>gga-miR-6571-3p MIMAT0025650 Gallus gallus miR-6571-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagac 6
         ||||||
Sbjct: 3 agagac 8
>mmu-miR-6397 MIMAT0025149 Mus musculus miR-6397
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 3 gagact 8
>hme-miR-6312-5p MIMAT0025019 Heliconius melpomene miR-6312-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 3 gagact 8
>hco-miR-5918a MIMAT0023391 Haemonchus contortus miR-5918a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 7 gagact 2
>sha-miR-340 MIMAT0022775 Sarcophilus harrisii miR-340
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 6 gagact 1
>pti-miR5480 MIMAT0022113 Phaeodactylum tricornutum miR5480
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 1 gagact 6
>mtr-miR5218 MIMAT0021176 Medicago truncatula miR5218
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 2 gagact 7
>pma-miR-4579 MIMAT0019612 Petromyzon marinus miR-4579
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 1 gagact 6
>hsa-miR-4474-5p MIMAT0019234 Homo sapiens miR-4474-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>hsa-miR-4463 MIMAT0018987 Homo sapiens miR-4463
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 1 gagact 6
>hsa-miR-3672 MIMAT0018095 Homo sapiens miR-3672
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 3 gagact 8
>bmo-miR-3219 MIMAT0015399 Bombyx mori miR-3219
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 3 gagact 8
>hsa-miR-3184-3p MIMAT0022731 Homo sapiens miR-3184-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>mmu-miR-3108-5p MIMAT0014947 Mus musculus miR-3108-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagac 6
         ||||||
Sbjct: 6 agagac 1
>dps-miR-2546-3p MIMAT0012353 Drosophila pseudoobscura
         miR-2546-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>mml-miR-452-3p MIMAT0026879 Macaca mulatta miR-452-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 6 gagact 1
>oan-miR-873-3p MIMAT0007273 Ornithorhynchus anatinus miR-873-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 1 gagact 6
>rno-miR-873-3p MIMAT0017318 Rattus norvegicus miR-873-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 1 gagact 6
>ppt-miR1065 MIMAT0005192 Physcomitrella patens miR1065
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
>mmu-miR-873a-3p MIMAT0017279 Mus musculus miR-873a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagact 7
         ||||||
Sbjct: 1 gagact 6
>mmu-miR-452-3p MIMAT0017194 Mus musculus miR-452-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagact 7
         ||||||
Sbjct: 8 gagact 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 66
Number of extensions: 60
Number of successful extensions: 46
Number of sequences better than 100.0: 46
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 46
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)