BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-loop
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bra-miR9561-3p MIMAT0035678 Brassica rapa miR9561-3p 14 20
mdo-miR-7344-5p MIMAT0028698 Monodelphis domestica miR-7344-5p 14 20
mmu-miR-6898-3p MIMAT0027697 Mus musculus miR-6898-3p 14 20
gga-miR-6577-3p MIMAT0025662 Gallus gallus miR-6577-3p 14 20
osa-miR1863b.2 MIMAT0020950 Oryza sativa miR1863b.2 14 20
dps-miR-980-5p MIMAT0012223 Drosophila pseudoobscura miR-980-5p 14 20
rno-miR-452-3p MIMAT0035749 Rattus norvegicus miR-452-3p 12 80
bra-miR9561-5p MIMAT0035677 Brassica rapa miR9561-5p 12 80
nve-miR-9427 MIMAT0035386 Nematostella vectensis miR-9427 12 80
efu-miR-452 MIMAT0034893 Eptesicus fuscus miR-452 12 80
efu-miR-9214 MIMAT0034805 Eptesicus fuscus miR-9214 12 80
eca-miR-9120 MIMAT0034669 Equus caballus miR-9120 12 80
gra-miR8687 MIMAT0034060 Gossypium raimondii miR8687 12 80
pxy-miR-8529 MIMAT0033771 Plutella xylostella miR-8529 12 80
cel-miR-8202-3p MIMAT0032818 Caenorhabditis elegans miR-8202-3p 12 80
stu-miR169c-3p MIMAT0031364 Solanum tuberosum miR169c-3p 12 80
stu-miR169b-3p MIMAT0031362 Solanum tuberosum miR169b-3p 12 80
stu-miR169a-3p MIMAT0031360 Solanum tuberosum miR169a-3p 12 80
bdi-miR7713-3p MIMAT0030149 Brachypodium distachyon miR7713-3p 12 80
lja-miR7516-3p MIMAT0029329 Lotus japonicus miR7516-3p 12 80
gga-miR-7463-5p MIMAT0029080 Gallus gallus miR-7463-5p 12 80
mml-miR-7174-3p MIMAT0028287 Macaca mulatta miR-7174-3p 12 80
hsa-miR-6864-3p MIMAT0027629 Homo sapiens miR-6864-3p 12 80
hsa-miR-6818-3p MIMAT0027537 Homo sapiens miR-6818-3p 12 80
gga-miR-6696-3p MIMAT0025803 Gallus gallus miR-6696-3p 12 80
gga-miR-6571-3p MIMAT0025650 Gallus gallus miR-6571-3p 12 80
mmu-miR-6397 MIMAT0025149 Mus musculus miR-6397 12 80
hme-miR-6312-5p MIMAT0025019 Heliconius melpomene miR-6312-5p 12 80
hco-miR-5918a MIMAT0023391 Haemonchus contortus miR-5918a 12 80
sha-miR-340 MIMAT0022775 Sarcophilus harrisii miR-340 12 80
pti-miR5480 MIMAT0022113 Phaeodactylum tricornutum miR5480 12 80
mtr-miR5218 MIMAT0021176 Medicago truncatula miR5218 12 80
pma-miR-4579 MIMAT0019612 Petromyzon marinus miR-4579 12 80
hsa-miR-4474-5p MIMAT0019234 Homo sapiens miR-4474-5p 12 80
hsa-miR-4463 MIMAT0018987 Homo sapiens miR-4463 12 80
hsa-miR-3672 MIMAT0018095 Homo sapiens miR-3672 12 80
bmo-miR-3219 MIMAT0015399 Bombyx mori miR-3219 12 80
hsa-miR-3184-3p MIMAT0022731 Homo sapiens miR-3184-3p 12 80
mmu-miR-3108-5p MIMAT0014947 Mus musculus miR-3108-5p 12 80
dps-miR-2546-3p MIMAT0012353 Drosophila pseudoobscura miR-2546-3p 12 80
mml-miR-452-3p MIMAT0026879 Macaca mulatta miR-452-3p 12 80
oan-miR-873-3p MIMAT0007273 Ornithorhynchus anatinus miR-873-3p 12 80
rno-miR-873-3p MIMAT0017318 Rattus norvegicus miR-873-3p 12 80
ppt-miR1065 MIMAT0005192 Physcomitrella patens miR1065 12 80
mmu-miR-873a-3p MIMAT0017279 Mus musculus miR-873a-3p 12 80
mmu-miR-452-3p MIMAT0017194 Mus musculus miR-452-3p 12 80
>bra-miR9561-3p MIMAT0035678 Brassica rapa miR9561-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agagact 7
|||||||
Sbjct: 2 agagact 8
>mdo-miR-7344-5p MIMAT0028698 Monodelphis domestica miR-7344-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagact 7
|||||||
Sbjct: 8 agagact 2
>mmu-miR-6898-3p MIMAT0027697 Mus musculus miR-6898-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagact 7
|||||||
Sbjct: 8 agagact 2
>gga-miR-6577-3p MIMAT0025662 Gallus gallus miR-6577-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agagact 7
|||||||
Sbjct: 1 agagact 7
>osa-miR1863b.2 MIMAT0020950 Oryza sativa miR1863b.2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agagact 7
|||||||
Sbjct: 1 agagact 7
>dps-miR-980-5p MIMAT0012223 Drosophila pseudoobscura miR-980-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagact 7
|||||||
Sbjct: 7 agagact 1
>rno-miR-452-3p MIMAT0035749 Rattus norvegicus miR-452-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>bra-miR9561-5p MIMAT0035677 Brassica rapa miR9561-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>nve-miR-9427 MIMAT0035386 Nematostella vectensis miR-9427
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagac 6
||||||
Sbjct: 1 agagac 6
>efu-miR-452 MIMAT0034893 Eptesicus fuscus miR-452
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>efu-miR-9214 MIMAT0034805 Eptesicus fuscus miR-9214
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagac 6
||||||
Sbjct: 6 agagac 1
>eca-miR-9120 MIMAT0034669 Equus caballus miR-9120
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>gra-miR8687 MIMAT0034060 Gossypium raimondii miR8687
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagac 6
||||||
Sbjct: 1 agagac 6
>pxy-miR-8529 MIMAT0033771 Plutella xylostella miR-8529
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>cel-miR-8202-3p MIMAT0032818 Caenorhabditis elegans miR-8202-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagac 6
||||||
Sbjct: 1 agagac 6
>stu-miR169c-3p MIMAT0031364 Solanum tuberosum miR169c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>stu-miR169b-3p MIMAT0031362 Solanum tuberosum miR169b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>stu-miR169a-3p MIMAT0031360 Solanum tuberosum miR169a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>bdi-miR7713-3p MIMAT0030149 Brachypodium distachyon miR7713-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 3 gagact 8
>lja-miR7516-3p MIMAT0029329 Lotus japonicus miR7516-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagac 6
||||||
Sbjct: 1 agagac 6
>gga-miR-7463-5p MIMAT0029080 Gallus gallus miR-7463-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>mml-miR-7174-3p MIMAT0028287 Macaca mulatta miR-7174-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 6 gagact 1
>hsa-miR-6864-3p MIMAT0027629 Homo sapiens miR-6864-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 3 gagact 8
>hsa-miR-6818-3p MIMAT0027537 Homo sapiens miR-6818-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagac 6
||||||
Sbjct: 8 agagac 3
>gga-miR-6696-3p MIMAT0025803 Gallus gallus miR-6696-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 3 gagact 8
>gga-miR-6571-3p MIMAT0025650 Gallus gallus miR-6571-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagac 6
||||||
Sbjct: 3 agagac 8
>mmu-miR-6397 MIMAT0025149 Mus musculus miR-6397
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 3 gagact 8
>hme-miR-6312-5p MIMAT0025019 Heliconius melpomene miR-6312-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 3 gagact 8
>hco-miR-5918a MIMAT0023391 Haemonchus contortus miR-5918a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 7 gagact 2
>sha-miR-340 MIMAT0022775 Sarcophilus harrisii miR-340
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 6 gagact 1
>pti-miR5480 MIMAT0022113 Phaeodactylum tricornutum miR5480
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 1 gagact 6
>mtr-miR5218 MIMAT0021176 Medicago truncatula miR5218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 2 gagact 7
>pma-miR-4579 MIMAT0019612 Petromyzon marinus miR-4579
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 1 gagact 6
>hsa-miR-4474-5p MIMAT0019234 Homo sapiens miR-4474-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>hsa-miR-4463 MIMAT0018987 Homo sapiens miR-4463
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 1 gagact 6
>hsa-miR-3672 MIMAT0018095 Homo sapiens miR-3672
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 3 gagact 8
>bmo-miR-3219 MIMAT0015399 Bombyx mori miR-3219
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 3 gagact 8
>hsa-miR-3184-3p MIMAT0022731 Homo sapiens miR-3184-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>mmu-miR-3108-5p MIMAT0014947 Mus musculus miR-3108-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagac 6
||||||
Sbjct: 6 agagac 1
>dps-miR-2546-3p MIMAT0012353 Drosophila pseudoobscura
miR-2546-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>mml-miR-452-3p MIMAT0026879 Macaca mulatta miR-452-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 6 gagact 1
>oan-miR-873-3p MIMAT0007273 Ornithorhynchus anatinus miR-873-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 1 gagact 6
>rno-miR-873-3p MIMAT0017318 Rattus norvegicus miR-873-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 1 gagact 6
>ppt-miR1065 MIMAT0005192 Physcomitrella patens miR1065
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
>mmu-miR-873a-3p MIMAT0017279 Mus musculus miR-873a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagact 7
||||||
Sbjct: 1 gagact 6
>mmu-miR-452-3p MIMAT0017194 Mus musculus miR-452-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagact 7
||||||
Sbjct: 8 gagact 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 66
Number of extensions: 60
Number of successful extensions: 46
Number of sequences better than 100.0: 46
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 46
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)