BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-7-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-7083-3p MIMAT0028073 Mus musculus miR-7083-3p                  14      20
ptc-miR6421-3p MIMAT0025181 Populus trichocarpa miR6421-3p             14      20
asu-miR-5349-5p MIMAT0021550 Ascaris suum miR-5349-5p                  14      20
pma-miR-18b-3p MIMAT0019390 Petromyzon marinus miR-18b-3p              14      20
hsa-miR-4468 MIMAT0018995 Homo sapiens miR-4468                        14      20
dps-miR-2522b-3p MIMAT0012333 Drosophila pseudoobscura miR-2522b-3p    14      20
bta-miR-2442 MIMAT0012017 Bos taurus miR-2442                          14      20
bta-miR-2397-3p MIMAT0011952 Bos taurus miR-2397-3p                    14      20
hsa-miR-2278 MIMAT0011778 Homo sapiens miR-2278                        14      20
bdi-miR845 MIMAT0035529 Brachypodium distachyon miR845                 12      80
efu-miR-9189c MIMAT0034886 Eptesicus fuscus miR-9189c                  12      80
eca-miR-9177 MIMAT0034757 Equus caballus miR-9177                      12      80
eca-miR-9055 MIMAT0034599 Equus caballus miR-9055                      12      80
eca-miR-9045 MIMAT0034588 Equus caballus miR-9045                      12      80
eca-miR-8922 MIMAT0034450 Equus caballus miR-8922                      12      80
ppc-miR-8364s-3p MIMAT0033271 Pristionchus pacificus miR-8364s-3p      12      80
ppc-miR-8364l-3p MIMAT0033265 Pristionchus pacificus miR-8364l-3p      12      80
ppc-miR-8341-5p MIMAT0033227 Pristionchus pacificus miR-8341-5p        12      80
bdi-miR7782-3p MIMAT0030319 Brachypodium distachyon miR7782-3p         12      80
bta-miR-6523b MIMAT0029951 Bos taurus miR-6523b                        12      80
mmu-miR-7686-3p MIMAT0029899 Mus musculus miR-7686-3p                  12      80
mmu-miR-3620-3p MIMAT0029879 Mus musculus miR-3620-3p                  12      80
mdo-miR-7371j-3p MIMAT0028791 Monodelphis domestica miR-7371j-3p       12      80
mdo-miR-7371e-3p MIMAT0028783 Monodelphis domestica miR-7371e-3p       12      80
mdo-miR-7371b-3p MIMAT0028775 Monodelphis domestica miR-7371b-3p       12      80
mdo-miR-7371a-3p MIMAT0028773 Monodelphis domestica miR-7371a-3p       12      80
mmu-miR-7215-3p MIMAT0028399 Mus musculus miR-7215-3p                  12      80
mml-miR-7188-3p MIMAT0028331 Macaca mulatta miR-7188-3p                12      80
mmu-miR-7063-3p MIMAT0028031 Mus musculus miR-7063-3p                  12      80
mmu-miR-7038-3p MIMAT0027981 Mus musculus miR-7038-3p                  12      80
mmu-miR-7030-3p MIMAT0027965 Mus musculus miR-7030-3p                  12      80
mmu-miR-7018-5p MIMAT0027940 Mus musculus miR-7018-5p                  12      80
mmu-miR-6973b-3p MIMAT0027909 Mus musculus miR-6973b-3p                12      80
hsa-miR-6828-3p MIMAT0027557 Homo sapiens miR-6828-3p                  12      80
hsa-miR-6501-3p MIMAT0025459 Homo sapiens miR-6501-3p                  12      80
mmu-miR-6402 MIMAT0025154 Mus musculus miR-6402                        12      80
hvu-miR6181 MIMAT0024805 Hordeum vulgare miR6181                       12      80
hsa-miR-6081 MIMAT0023706 Homo sapiens miR-6081                        12      80
asu-miR-252-3p MIMAT0021510 Ascaris suum miR-252-3p                    12      80
mmu-miR-5108 MIMAT0020616 Mus musculus miR-5108                        12      80
hsa-miR-4690-5p MIMAT0019779 Homo sapiens miR-4690-5p                  12      80
pma-miR-18a-3p MIMAT0019388 Petromyzon marinus miR-18a-3p              12      80
cin-miR-4071-5p MIMAT0016630 Ciona intestinalis miR-4071-5p            12      80
cin-miR-4001d-3p MIMAT0016453 Ciona intestinalis miR-4001d-3p          12      80
ppy-miR-767-3p MIMAT0016108 Pongo pygmaeus miR-767-3p                  12      80
mmu-miR-3105-5p MIMAT0014941 Mus musculus miR-3105-5p                  12      80
tgu-miR-2987-3p MIMAT0014497 Taeniopygia guttata miR-2987-3p           12      80
tgu-miR-1784-5p MIMAT0026960 Taeniopygia guttata miR-1784-5p           12      80
rlcv-miR-rL1-33-3p MIMAT0019196 Rhesus lymphocryptovirus miR-rL1...    12      80
eca-miR-767-3p MIMAT0013246 Equus caballus miR-767-3p                  12      80
aqc-miR408 MIMAT0012581 Aquilegia caerulea miR408                      12      80
dps-miR-2518 MIMAT0012301 Drosophila pseudoobscura miR-2518            12      80
dme-miR-2490-3p MIMAT0020911 Drosophila melanogaster miR-2490-3p       12      80
mmu-miR-1907 MIMAT0007876 Mus musculus miR-1907                        12      80
mml-miR-767-3p MIMAT0006511 Macaca mulatta miR-767-3p                  12      80
gga-miR-1784-5p MIMAT0007696 Gallus gallus miR-1784-5p                 12      80
gga-miR-1783 MIMAT0007695 Gallus gallus miR-1783                       12      80
gga-miR-1768 MIMAT0007676 Gallus gallus miR-1768                       12      80
gga-miR-1745 MIMAT0007650 Gallus gallus miR-1745                       12      80
gga-miR-1744-5p MIMAT0007648 Gallus gallus miR-1744-5p                 12      80
gga-miR-1567 MIMAT0007427 Gallus gallus miR-1567                       12      80
hsa-miR-767-3p MIMAT0003883 Homo sapiens miR-767-3p                    12      80
zma-miR156j-3p MIMAT0015175 Zea mays miR156j-3p                        12      80
>mmu-miR-7083-3p MIMAT0028073 Mus musculus miR-7083-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagcag 7
         |||||||
Sbjct: 8 agagcag 2
>ptc-miR6421-3p MIMAT0025181 Populus trichocarpa miR6421-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagcag 7
         |||||||
Sbjct: 2 agagcag 8
>asu-miR-5349-5p MIMAT0021550 Ascaris suum miR-5349-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagcag 7
         |||||||
Sbjct: 7 agagcag 1
>pma-miR-18b-3p MIMAT0019390 Petromyzon marinus miR-18b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagcag 7
         |||||||
Sbjct: 8 agagcag 2
>hsa-miR-4468 MIMAT0018995 Homo sapiens miR-4468
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagcag 7
         |||||||
Sbjct: 1 agagcag 7
>dps-miR-2522b-3p MIMAT0012333 Drosophila pseudoobscura
         miR-2522b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagcag 7
         |||||||
Sbjct: 1 agagcag 7
>bta-miR-2442 MIMAT0012017 Bos taurus miR-2442
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagcag 7
         |||||||
Sbjct: 1 agagcag 7
>bta-miR-2397-3p MIMAT0011952 Bos taurus miR-2397-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagcag 7
         |||||||
Sbjct: 2 agagcag 8
>hsa-miR-2278 MIMAT0011778 Homo sapiens miR-2278
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagcag 7
         |||||||
Sbjct: 2 agagcag 8
>bdi-miR845 MIMAT0035529 Brachypodium distachyon miR845
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
>efu-miR-9189c MIMAT0034886 Eptesicus fuscus miR-9189c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 8 agagca 3
>eca-miR-9177 MIMAT0034757 Equus caballus miR-9177
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 1 gagcag 6
>eca-miR-9055 MIMAT0034599 Equus caballus miR-9055
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 3 agagca 8
>eca-miR-9045 MIMAT0034588 Equus caballus miR-9045
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 1 gagcag 6
>eca-miR-8922 MIMAT0034450 Equus caballus miR-8922
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 3 gagcag 8
>ppc-miR-8364s-3p MIMAT0033271 Pristionchus pacificus
         miR-8364s-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 3 agagca 8
>ppc-miR-8364l-3p MIMAT0033265 Pristionchus pacificus
         miR-8364l-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 3 agagca 8
>ppc-miR-8341-5p MIMAT0033227 Pristionchus pacificus miR-8341-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 3 agagca 8
>bdi-miR7782-3p MIMAT0030319 Brachypodium distachyon miR7782-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 8 gagcag 3
>bta-miR-6523b MIMAT0029951 Bos taurus miR-6523b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 6 gagcag 1
>mmu-miR-7686-3p MIMAT0029899 Mus musculus miR-7686-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 6 gagcag 1
>mmu-miR-3620-3p MIMAT0029879 Mus musculus miR-3620-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 6 gagcag 1
>mdo-miR-7371j-3p MIMAT0028791 Monodelphis domestica
         miR-7371j-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 1 agagca 6
>mdo-miR-7371e-3p MIMAT0028783 Monodelphis domestica
         miR-7371e-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 3 agagca 8
>mdo-miR-7371b-3p MIMAT0028775 Monodelphis domestica
         miR-7371b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 3 agagca 8
>mdo-miR-7371a-3p MIMAT0028773 Monodelphis domestica
         miR-7371a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 3 agagca 8
>mmu-miR-7215-3p MIMAT0028399 Mus musculus miR-7215-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
>mml-miR-7188-3p MIMAT0028331 Macaca mulatta miR-7188-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 8 agagca 3
>mmu-miR-7063-3p MIMAT0028031 Mus musculus miR-7063-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
>mmu-miR-7038-3p MIMAT0027981 Mus musculus miR-7038-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 8 gagcag 3
>mmu-miR-7030-3p MIMAT0027965 Mus musculus miR-7030-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 8 agagca 3
>mmu-miR-7018-5p MIMAT0027940 Mus musculus miR-7018-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 3 gagcag 8
>mmu-miR-6973b-3p MIMAT0027909 Mus musculus miR-6973b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
>hsa-miR-6828-3p MIMAT0027557 Homo sapiens miR-6828-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 8 gagcag 3
>hsa-miR-6501-3p MIMAT0025459 Homo sapiens miR-6501-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 3 agagca 8
>mmu-miR-6402 MIMAT0025154 Mus musculus miR-6402
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 1 gagcag 6
>hvu-miR6181 MIMAT0024805 Hordeum vulgare miR6181
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
>hsa-miR-6081 MIMAT0023706 Homo sapiens miR-6081
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 3 gagcag 8
>asu-miR-252-3p MIMAT0021510 Ascaris suum miR-252-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 8 gagcag 3
>mmu-miR-5108 MIMAT0020616 Mus musculus miR-5108
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 3 agagca 8
>hsa-miR-4690-5p MIMAT0019779 Homo sapiens miR-4690-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 1 gagcag 6
>pma-miR-18a-3p MIMAT0019388 Petromyzon marinus miR-18a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 8 gagcag 3
>cin-miR-4071-5p MIMAT0016630 Ciona intestinalis miR-4071-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 8 agagca 3
>cin-miR-4001d-3p MIMAT0016453 Ciona intestinalis miR-4001d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 8 gagcag 3
>ppy-miR-767-3p MIMAT0016108 Pongo pygmaeus miR-767-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 7 gagcag 2
>mmu-miR-3105-5p MIMAT0014941 Mus musculus miR-3105-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 1 agagca 6
>tgu-miR-2987-3p MIMAT0014497 Taeniopygia guttata miR-2987-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 1 agagca 6
>tgu-miR-1784-5p MIMAT0026960 Taeniopygia guttata miR-1784-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 8 gagcag 3
>rlcv-miR-rL1-33-3p MIMAT0019196 Rhesus lymphocryptovirus
         miR-rL1-33-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agagca 6
         ||||||
Sbjct: 3 agagca 8
>eca-miR-767-3p MIMAT0013246 Equus caballus miR-767-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 7 gagcag 2
>aqc-miR408 MIMAT0012581 Aquilegia caerulea miR408
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
>dps-miR-2518 MIMAT0012301 Drosophila pseudoobscura miR-2518
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 3 gagcag 8
>dme-miR-2490-3p MIMAT0020911 Drosophila melanogaster
         miR-2490-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
>mmu-miR-1907 MIMAT0007876 Mus musculus miR-1907
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 1 gagcag 6
>mml-miR-767-3p MIMAT0006511 Macaca mulatta miR-767-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 7 gagcag 2
>gga-miR-1784-5p MIMAT0007696 Gallus gallus miR-1784-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 8 gagcag 3
>gga-miR-1783 MIMAT0007695 Gallus gallus miR-1783
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
>gga-miR-1768 MIMAT0007676 Gallus gallus miR-1768
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 1 gagcag 6
>gga-miR-1745 MIMAT0007650 Gallus gallus miR-1745
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
>gga-miR-1744-5p MIMAT0007648 Gallus gallus miR-1744-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
>gga-miR-1567 MIMAT0007427 Gallus gallus miR-1567
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 8 gagcag 3
>hsa-miR-767-3p MIMAT0003883 Homo sapiens miR-767-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gagcag 7
         ||||||
Sbjct: 7 gagcag 2
>zma-miR156j-3p MIMAT0015175 Zea mays miR156j-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agagca 6
         ||||||
Sbjct: 6 agagca 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 89
Number of extensions: 80
Number of successful extensions: 63
Number of sequences better than 100.0: 63
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 63
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)