BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-2-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8225-3p MIMAT0032893 Pristionchus pacificus miR-8225-3p 16 6.9
mghv-miR-M1-2-5p MIMAT0017186 Mouse gammaherpesvirus miR-M1-2-5p 16 6.9
lja-miR7520 MIMAT0029335 Lotus japonicus miR7520 14 27
mdo-miR-7319-5p MIMAT0028638 Monodelphis domestica miR-7319-5p 14 27
mmu-miR-7058-5p MIMAT0028020 Mus musculus miR-7058-5p 14 27
bta-miR-2328-5p MIMAT0011857 Bos taurus miR-2328-5p 14 27
ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853 14 27
>ppc-miR-8225-3p MIMAT0032893 Pristionchus pacificus miR-8225-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agaggggg 8
||||||||
Sbjct: 1 agaggggg 8
>mghv-miR-M1-2-5p MIMAT0017186 Mouse gammaherpesvirus
miR-M1-2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agaggggg 8
||||||||
Sbjct: 1 agaggggg 8
>lja-miR7520 MIMAT0029335 Lotus japonicus miR7520
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gaggggg 8
|||||||
Sbjct: 1 gaggggg 7
>mdo-miR-7319-5p MIMAT0028638 Monodelphis domestica miR-7319-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagggg 7
|||||||
Sbjct: 7 agagggg 1
>mmu-miR-7058-5p MIMAT0028020 Mus musculus miR-7058-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agagggg 7
|||||||
Sbjct: 2 agagggg 8
>bta-miR-2328-5p MIMAT0011857 Bos taurus miR-2328-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaggggg 8
|||||||
Sbjct: 8 gaggggg 2
>ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagggg 7
|||||||
Sbjct: 8 agagggg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 133
Number of extensions: 124
Number of successful extensions: 75
Number of sequences better than 100.0: 7
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 7
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
