BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-4-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prv-miR-LLT4 MIMAT0025307 Pseudorabies virus miR-LLT4 16 6.9
isc-miR-5306 MIMAT0021376 Ixodes scapularis miR-5306 16 6.9
atr-miR828 MIMAT0033948 Amborella trichopoda miR828 14 27
ghr-miR7487 MIMAT0029129 Gossypium hirsutum miR7487 14 27
mml-miR-4796-5p MIMAT0027117 Macaca mulatta miR-4796-5p 14 27
nta-miR6020a-3p MIMAT0023585 Nicotiana tabacum miR6020a-3p 14 27
cel-miR-4810a MIMAT0019995 Caenorhabditis elegans miR-4810a 14 27
bmo-miR-3217 MIMAT0015397 Bombyx mori miR-3217 14 27
dsi-miR-960 MIMAT0012495 Drosophila simulans miR-960 14 27
nve-miR-2024e-5p MIMAT0009766 Nematostella vectensis miR-2024e-5p 14 27
>prv-miR-LLT4 MIMAT0025307 Pseudorabies virus miR-LLT4
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agagtatc 8
||||||||
Sbjct: 1 agagtatc 8
>isc-miR-5306 MIMAT0021376 Ixodes scapularis miR-5306
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agagtatc 8
||||||||
Sbjct: 1 agagtatc 8
>atr-miR828 MIMAT0033948 Amborella trichopoda miR828
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtatc 8
|||||||
Sbjct: 8 gagtatc 2
>ghr-miR7487 MIMAT0029129 Gossypium hirsutum miR7487
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtat 7
|||||||
Sbjct: 7 agagtat 1
>mml-miR-4796-5p MIMAT0027117 Macaca mulatta miR-4796-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtat 7
|||||||
Sbjct: 8 agagtat 2
>nta-miR6020a-3p MIMAT0023585 Nicotiana tabacum miR6020a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtatc 8
|||||||
Sbjct: 8 gagtatc 2
>cel-miR-4810a MIMAT0019995 Caenorhabditis elegans miR-4810a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gagtatc 8
|||||||
Sbjct: 2 gagtatc 8
>bmo-miR-3217 MIMAT0015397 Bombyx mori miR-3217
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agagtat 7
|||||||
Sbjct: 2 agagtat 8
>dsi-miR-960 MIMAT0012495 Drosophila simulans miR-960
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agagtat 7
|||||||
Sbjct: 1 agagtat 7
>nve-miR-2024e-5p MIMAT0009766 Nematostella vectensis
miR-2024e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agagtat 7
|||||||
Sbjct: 1 agagtat 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 115
Number of extensions: 103
Number of successful extensions: 48
Number of sequences better than 100.0: 10
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)