BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prv-miR-4-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

prv-miR-LLT4 MIMAT0025307 Pseudorabies virus miR-LLT4                  16   6.9  
isc-miR-5306 MIMAT0021376 Ixodes scapularis miR-5306                   16   6.9  
atr-miR828 MIMAT0033948 Amborella trichopoda miR828                    14      27
ghr-miR7487 MIMAT0029129 Gossypium hirsutum miR7487                    14      27
mml-miR-4796-5p MIMAT0027117 Macaca mulatta miR-4796-5p                14      27
nta-miR6020a-3p MIMAT0023585 Nicotiana tabacum miR6020a-3p             14      27
cel-miR-4810a MIMAT0019995 Caenorhabditis elegans miR-4810a            14      27
bmo-miR-3217 MIMAT0015397 Bombyx mori miR-3217                         14      27
dsi-miR-960 MIMAT0012495 Drosophila simulans miR-960                   14      27
nve-miR-2024e-5p MIMAT0009766 Nematostella vectensis miR-2024e-5p      14      27
>prv-miR-LLT4 MIMAT0025307 Pseudorabies virus miR-LLT4
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 agagtatc 8
         ||||||||
Sbjct: 1 agagtatc 8
>isc-miR-5306 MIMAT0021376 Ixodes scapularis miR-5306
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 agagtatc 8
         ||||||||
Sbjct: 1 agagtatc 8
>atr-miR828 MIMAT0033948 Amborella trichopoda miR828
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtatc 8
         |||||||
Sbjct: 8 gagtatc 2
>ghr-miR7487 MIMAT0029129 Gossypium hirsutum miR7487
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagtat 7
         |||||||
Sbjct: 7 agagtat 1
>mml-miR-4796-5p MIMAT0027117 Macaca mulatta miR-4796-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagtat 7
         |||||||
Sbjct: 8 agagtat 2
>nta-miR6020a-3p MIMAT0023585 Nicotiana tabacum miR6020a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtatc 8
         |||||||
Sbjct: 8 gagtatc 2
>cel-miR-4810a MIMAT0019995 Caenorhabditis elegans miR-4810a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gagtatc 8
         |||||||
Sbjct: 2 gagtatc 8
>bmo-miR-3217 MIMAT0015397 Bombyx mori miR-3217
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagtat 7
         |||||||
Sbjct: 2 agagtat 8
>dsi-miR-960 MIMAT0012495 Drosophila simulans miR-960
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagtat 7
         |||||||
Sbjct: 1 agagtat 7
>nve-miR-2024e-5p MIMAT0009766 Nematostella vectensis
         miR-2024e-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagtat 7
         |||||||
Sbjct: 1 agagtat 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 115
Number of extensions: 103
Number of successful extensions: 48
Number of sequences better than 100.0: 10
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)