BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hbv-miR-b20-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hsa-miR-6794-3p MIMAT0027489 Homo sapiens miR-6794-3p                  16   6.9  
ata-miR156d-3p MIMAT0037095 Aegilops tauschii miR156d-3p               14      27
bra-miR156d-3p MIMAT0035823 Brassica rapa miR156d-3p                   14      27
bra-miR156b-3p MIMAT0035819 Brassica rapa miR156b-3p                   14      27
efu-miR-9255 MIMAT0034873 Eptesicus fuscus miR-9255                    14      27
gra-miR8690 MIMAT0034063 Gossypium raimondii miR8690                   14      27
mdo-miR-7361-3p MIMAT0028735 Monodelphis domestica miR-7361-3p         14      27
mml-miR-6794-3p MIMAT0028295 Macaca mulatta miR-6794-3p                14      27
gga-miR-6700-3p MIMAT0025810 Gallus gallus miR-6700-3p                 14      27
tur-miR-307-5p MIMAT0023068 Tetranychus urticae miR-307-5p             14      27
hsa-miR-5586-3p MIMAT0022288 Homo sapiens miR-5586-3p                  14      27
sko-miR-4818b-5p MIMAT0020010 Saccoglossus kowalevskii miR-4818b-5p    14      27
hsa-miR-4639-3p MIMAT0019698 Homo sapiens miR-4639-3p                  14      27
mmu-miR-3470b MIMAT0015641 Mus musculus miR-3470b                      14      27
aly-miR156f-3p MIMAT0017408 Arabidopsis lyrata miR156f-3p              14      27
aly-miR156d-3p MIMAT0017404 Arabidopsis lyrata miR156d-3p              14      27
hbv-miR-B20-5p MIMAT0012172 Herpes B miR-B20-5p                        14      27
lmi-miR-307-5p MIMAT0010136 Locusta migratoria miR-307-5p              14      27
tca-miR-307-5p MIMAT0019129 Tribolium castaneum miR-307-5p             14      27
bmo-miR-307-5p MIMAT0015237 Bombyx mori miR-307-5p                     14      27
osa-miR156b-3p MIMAT0022845 Oryza sativa miR156b-3p                    14      27
dme-miR-307a-5p MIMAT0020832 Drosophila melanogaster miR-307a-5p       14      27
ath-miR156f-3p MIMAT0031869 Arabidopsis thaliana miR156f-3p            14      27
ath-miR156d-3p MIMAT0031868 Arabidopsis thaliana miR156d-3p            14      27
>hsa-miR-6794-3p MIMAT0027489 Homo sapiens miR-6794-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 agagtgag 8
         ||||||||
Sbjct: 8 agagtgag 1
>ata-miR156d-3p MIMAT0037095 Aegilops tauschii miR156d-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>bra-miR156d-3p MIMAT0035823 Brassica rapa miR156d-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>bra-miR156b-3p MIMAT0035819 Brassica rapa miR156b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>efu-miR-9255 MIMAT0034873 Eptesicus fuscus miR-9255
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagtga 7
         |||||||
Sbjct: 7 agagtga 1
>gra-miR8690 MIMAT0034063 Gossypium raimondii miR8690
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagtga 7
         |||||||
Sbjct: 1 agagtga 7
>mdo-miR-7361-3p MIMAT0028735 Monodelphis domestica miR-7361-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagtga 7
         |||||||
Sbjct: 8 agagtga 2
>mml-miR-6794-3p MIMAT0028295 Macaca mulatta miR-6794-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagtga 7
         |||||||
Sbjct: 7 agagtga 1
>gga-miR-6700-3p MIMAT0025810 Gallus gallus miR-6700-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagtga 7
         |||||||
Sbjct: 7 agagtga 1
>tur-miR-307-5p MIMAT0023068 Tetranychus urticae miR-307-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>hsa-miR-5586-3p MIMAT0022288 Homo sapiens miR-5586-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agagtga 7
         |||||||
Sbjct: 2 agagtga 8
>sko-miR-4818b-5p MIMAT0020010 Saccoglossus kowalevskii
         miR-4818b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>hsa-miR-4639-3p MIMAT0019698 Homo sapiens miR-4639-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagtga 7
         |||||||
Sbjct: 7 agagtga 1
>mmu-miR-3470b MIMAT0015641 Mus musculus miR-3470b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agagtga 7
         |||||||
Sbjct: 7 agagtga 1
>aly-miR156f-3p MIMAT0017408 Arabidopsis lyrata miR156f-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>aly-miR156d-3p MIMAT0017404 Arabidopsis lyrata miR156d-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>hbv-miR-B20-5p MIMAT0012172 Herpes B miR-B20-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 1 gagtgag 7
>lmi-miR-307-5p MIMAT0010136 Locusta migratoria miR-307-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>tca-miR-307-5p MIMAT0019129 Tribolium castaneum miR-307-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>bmo-miR-307-5p MIMAT0015237 Bombyx mori miR-307-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>osa-miR156b-3p MIMAT0022845 Oryza sativa miR156b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>dme-miR-307a-5p MIMAT0020832 Drosophila melanogaster
         miR-307a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>ath-miR156f-3p MIMAT0031869 Arabidopsis thaliana miR156f-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
>ath-miR156d-3p MIMAT0031868 Arabidopsis thaliana miR156d-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gagtgag 8
         |||||||
Sbjct: 8 gagtgag 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 210
Number of extensions: 185
Number of successful extensions: 126
Number of sequences better than 100.0: 24
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 24
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)