BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b20-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-6794-3p MIMAT0027489 Homo sapiens miR-6794-3p 16 6.9
ata-miR156d-3p MIMAT0037095 Aegilops tauschii miR156d-3p 14 27
bra-miR156d-3p MIMAT0035823 Brassica rapa miR156d-3p 14 27
bra-miR156b-3p MIMAT0035819 Brassica rapa miR156b-3p 14 27
efu-miR-9255 MIMAT0034873 Eptesicus fuscus miR-9255 14 27
gra-miR8690 MIMAT0034063 Gossypium raimondii miR8690 14 27
mdo-miR-7361-3p MIMAT0028735 Monodelphis domestica miR-7361-3p 14 27
mml-miR-6794-3p MIMAT0028295 Macaca mulatta miR-6794-3p 14 27
gga-miR-6700-3p MIMAT0025810 Gallus gallus miR-6700-3p 14 27
tur-miR-307-5p MIMAT0023068 Tetranychus urticae miR-307-5p 14 27
hsa-miR-5586-3p MIMAT0022288 Homo sapiens miR-5586-3p 14 27
sko-miR-4818b-5p MIMAT0020010 Saccoglossus kowalevskii miR-4818b-5p 14 27
hsa-miR-4639-3p MIMAT0019698 Homo sapiens miR-4639-3p 14 27
mmu-miR-3470b MIMAT0015641 Mus musculus miR-3470b 14 27
aly-miR156f-3p MIMAT0017408 Arabidopsis lyrata miR156f-3p 14 27
aly-miR156d-3p MIMAT0017404 Arabidopsis lyrata miR156d-3p 14 27
hbv-miR-B20-5p MIMAT0012172 Herpes B miR-B20-5p 14 27
lmi-miR-307-5p MIMAT0010136 Locusta migratoria miR-307-5p 14 27
tca-miR-307-5p MIMAT0019129 Tribolium castaneum miR-307-5p 14 27
bmo-miR-307-5p MIMAT0015237 Bombyx mori miR-307-5p 14 27
osa-miR156b-3p MIMAT0022845 Oryza sativa miR156b-3p 14 27
dme-miR-307a-5p MIMAT0020832 Drosophila melanogaster miR-307a-5p 14 27
ath-miR156f-3p MIMAT0031869 Arabidopsis thaliana miR156f-3p 14 27
ath-miR156d-3p MIMAT0031868 Arabidopsis thaliana miR156d-3p 14 27
>hsa-miR-6794-3p MIMAT0027489 Homo sapiens miR-6794-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 agagtgag 8
||||||||
Sbjct: 8 agagtgag 1
>ata-miR156d-3p MIMAT0037095 Aegilops tauschii miR156d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>bra-miR156d-3p MIMAT0035823 Brassica rapa miR156d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>bra-miR156b-3p MIMAT0035819 Brassica rapa miR156b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>efu-miR-9255 MIMAT0034873 Eptesicus fuscus miR-9255
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtga 7
|||||||
Sbjct: 7 agagtga 1
>gra-miR8690 MIMAT0034063 Gossypium raimondii miR8690
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agagtga 7
|||||||
Sbjct: 1 agagtga 7
>mdo-miR-7361-3p MIMAT0028735 Monodelphis domestica miR-7361-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtga 7
|||||||
Sbjct: 8 agagtga 2
>mml-miR-6794-3p MIMAT0028295 Macaca mulatta miR-6794-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtga 7
|||||||
Sbjct: 7 agagtga 1
>gga-miR-6700-3p MIMAT0025810 Gallus gallus miR-6700-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtga 7
|||||||
Sbjct: 7 agagtga 1
>tur-miR-307-5p MIMAT0023068 Tetranychus urticae miR-307-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>hsa-miR-5586-3p MIMAT0022288 Homo sapiens miR-5586-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agagtga 7
|||||||
Sbjct: 2 agagtga 8
>sko-miR-4818b-5p MIMAT0020010 Saccoglossus kowalevskii
miR-4818b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>hsa-miR-4639-3p MIMAT0019698 Homo sapiens miR-4639-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtga 7
|||||||
Sbjct: 7 agagtga 1
>mmu-miR-3470b MIMAT0015641 Mus musculus miR-3470b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtga 7
|||||||
Sbjct: 7 agagtga 1
>aly-miR156f-3p MIMAT0017408 Arabidopsis lyrata miR156f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>aly-miR156d-3p MIMAT0017404 Arabidopsis lyrata miR156d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>hbv-miR-B20-5p MIMAT0012172 Herpes B miR-B20-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gagtgag 8
|||||||
Sbjct: 1 gagtgag 7
>lmi-miR-307-5p MIMAT0010136 Locusta migratoria miR-307-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>tca-miR-307-5p MIMAT0019129 Tribolium castaneum miR-307-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>bmo-miR-307-5p MIMAT0015237 Bombyx mori miR-307-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>osa-miR156b-3p MIMAT0022845 Oryza sativa miR156b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>dme-miR-307a-5p MIMAT0020832 Drosophila melanogaster
miR-307a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>ath-miR156f-3p MIMAT0031869 Arabidopsis thaliana miR156f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
>ath-miR156d-3p MIMAT0031868 Arabidopsis thaliana miR156d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgag 8
|||||||
Sbjct: 8 gagtgag 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 210
Number of extensions: 185
Number of successful extensions: 126
Number of sequences better than 100.0: 24
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 24
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)