BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-9
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prd-miR-7888-3p MIMAT0030549 Panagrellus redivivus miR-7888-3p 14 20
mmu-miR-7118-3p MIMAT0028134 Mus musculus miR-7118-3p 14 20
mmu-miR-6944-3p MIMAT0027789 Mus musculus miR-6944-3p 14 20
hsa-miR-4424 MIMAT0018939 Homo sapiens miR-4424 14 20
ata-miR2275b-5p MIMAT0037124 Aegilops tauschii miR2275b-5p 12 80
bta-miR-4680 MIMAT0036979 Bos taurus miR-4680 12 80
oha-miR-219-2-3p MIMAT0036843 Ophiophagus hannah miR-219-2-3p 12 80
gra-miR7584e MIMAT0034071 Gossypium raimondii miR7584e 12 80
gra-miR1446 MIMAT0034042 Gossypium raimondii miR1446 12 80
str-miR-8392-5p MIMAT0033452 Strongyloides ratti miR-8392-5p 12 80
str-miR-40-5p MIMAT0033436 Strongyloides ratti miR-40-5p 12 80
bta-miR-219 MIMAT0030444 Bos taurus miR-219 12 80
mdo-miR-7254-3p MIMAT0028475 Monodelphis domestica miR-7254-3p 12 80
gga-miR-6559-3p MIMAT0025626 Gallus gallus miR-6559-3p 12 80
pde-miR1311 MIMAT0025348 Pinus densata miR1311 12 80
nta-miR1446 MIMAT0024763 Nicotiana tabacum miR1446 12 80
hsa-miR-5684 MIMAT0022473 Homo sapiens miR-5684 12 80
ath-miR781b MIMAT0022420 Arabidopsis thaliana miR781b 12 80
aca-miR-5450 MIMAT0022072 Anolis carolinensis miR-5450 12 80
aca-miR-219-2-3p MIMAT0021886 Anolis carolinensis miR-219-2-3p 12 80
osa-miR5147 MIMAT0021092 Oryza sativa miR5147 12 80
ssc-miR-219a MIMAT0020590 Sus scrofa miR-219a 12 80
hsa-miR-4764-3p MIMAT0019915 Homo sapiens miR-4764-3p 12 80
hsa-miR-4714-5p MIMAT0019822 Homo sapiens miR-4714-5p 12 80
hsa-miR-4680-5p MIMAT0019764 Homo sapiens miR-4680-5p 12 80
hsa-miR-4653-3p MIMAT0019719 Homo sapiens miR-4653-3p 12 80
pma-miR-4586 MIMAT0019619 Petromyzon marinus miR-4586 12 80
pab-miR1311 MIMAT0018162 Picea abies miR1311 12 80
hsa-miR-3664-5p MIMAT0018086 Homo sapiens miR-3664-5p 12 80
aly-miR402-3p MIMAT0017682 Arabidopsis lyrata miR402-3p 12 80
aly-miR781-5p MIMAT0017597 Arabidopsis lyrata miR781-5p 12 80
mmu-miR-3087-3p MIMAT0014896 Mus musculus miR-3087-3p 12 80
cte-miR-2688-3p MIMAT0013541 Capitella teleta miR-2688-3p 12 80
cte-miR-2685-3p MIMAT0013533 Capitella teleta miR-2685-3p 12 80
zma-miR2275d-5p MIMAT0011773 Zea mays miR2275d-5p 12 80
zma-miR2275a-5p MIMAT0011767 Zea mays miR2275a-5p 12 80
crm-miR-63-5p MIMAT0011622 Caenorhabditis remanei miR-63-5p 12 80
osa-miR2090 MIMAT0010045 Oryza sativa miR2090 12 80
mtr-miR1507-5p MIMAT0010030 Medicago truncatula miR1507-5p 12 80
ppt-miR2079 MIMAT0010016 Physcomitrella patens miR2079 12 80
pta-miR1311 MIMAT0009128 Pinus taeda miR1311 12 80
ptr-miR-219-1-3p MIMAT0008074 Pan troglodytes miR-219-1-3p 12 80
gma-miR1527 MIMAT0007389 Glycine max miR1527 12 80
gga-miR-1451-3p MIMAT0007325 Gallus gallus miR-1451-3p 12 80
smo-miR1084 MIMAT0005235 Selaginella moellendorffii miR1084 12 80
cel-miR-792-5p MIMAT0020351 Caenorhabditis elegans miR-792-5p 12 80
ath-miR781a MIMAT0003940 Arabidopsis thaliana miR781a 12 80
mghv-miR-M1-5-5p MIMAT0001568 Mouse gammaherpesvirus miR-M1-5-5p 12 80
rno-miR-219a-1-3p MIMAT0004741 Rattus norvegicus miR-219a-1-3p 12 80
rno-miR-214-5p MIMAT0017159 Rattus norvegicus miR-214-5p 12 80
mmu-miR-219a-1-3p MIMAT0017055 Mus musculus miR-219a-1-3p 12 80
hsa-miR-219a-1-3p MIMAT0004567 Homo sapiens miR-219a-1-3p 12 80
cel-miR-63-5p MIMAT0015104 Caenorhabditis elegans miR-63-5p 12 80
>prd-miR-7888-3p MIMAT0030549 Panagrellus redivivus miR-7888-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtta 7
|||||||
Sbjct: 7 agagtta 1
>mmu-miR-7118-3p MIMAT0028134 Mus musculus miR-7118-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtta 7
|||||||
Sbjct: 7 agagtta 1
>mmu-miR-6944-3p MIMAT0027789 Mus musculus miR-6944-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agagtta 7
|||||||
Sbjct: 7 agagtta 1
>hsa-miR-4424 MIMAT0018939 Homo sapiens miR-4424
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agagtta 7
|||||||
Sbjct: 1 agagtta 7
>ata-miR2275b-5p MIMAT0037124 Aegilops tauschii miR2275b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>bta-miR-4680 MIMAT0036979 Bos taurus miR-4680
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagtt 6
||||||
Sbjct: 8 agagtt 3
>oha-miR-219-2-3p MIMAT0036843 Ophiophagus hannah miR-219-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 3 agagtt 8
>gra-miR7584e MIMAT0034071 Gossypium raimondii miR7584e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtta 7
||||||
Sbjct: 3 gagtta 8
>gra-miR1446 MIMAT0034042 Gossypium raimondii miR1446
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagtt 6
||||||
Sbjct: 6 agagtt 1
>str-miR-8392-5p MIMAT0033452 Strongyloides ratti miR-8392-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagtt 6
||||||
Sbjct: 6 agagtt 1
>str-miR-40-5p MIMAT0033436 Strongyloides ratti miR-40-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>bta-miR-219 MIMAT0030444 Bos taurus miR-219
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>mdo-miR-7254-3p MIMAT0028475 Monodelphis domestica miR-7254-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>gga-miR-6559-3p MIMAT0025626 Gallus gallus miR-6559-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>pde-miR1311 MIMAT0025348 Pinus densata miR1311
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 3 agagtt 8
>nta-miR1446 MIMAT0024763 Nicotiana tabacum miR1446
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagtt 6
||||||
Sbjct: 8 agagtt 3
>hsa-miR-5684 MIMAT0022473 Homo sapiens miR-5684
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagtt 6
||||||
Sbjct: 6 agagtt 1
>ath-miR781b MIMAT0022420 Arabidopsis thaliana miR781b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 3 agagtt 8
>aca-miR-5450 MIMAT0022072 Anolis carolinensis miR-5450
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>aca-miR-219-2-3p MIMAT0021886 Anolis carolinensis miR-219-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>osa-miR5147 MIMAT0021092 Oryza sativa miR5147
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagtt 6
||||||
Sbjct: 8 agagtt 3
>ssc-miR-219a MIMAT0020590 Sus scrofa miR-219a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>hsa-miR-4764-3p MIMAT0019915 Homo sapiens miR-4764-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtta 7
||||||
Sbjct: 7 gagtta 2
>hsa-miR-4714-5p MIMAT0019822 Homo sapiens miR-4714-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagtt 6
||||||
Sbjct: 6 agagtt 1
>hsa-miR-4680-5p MIMAT0019764 Homo sapiens miR-4680-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagtt 6
||||||
Sbjct: 8 agagtt 3
>hsa-miR-4653-3p MIMAT0019719 Homo sapiens miR-4653-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gagtta 7
||||||
Sbjct: 3 gagtta 8
>pma-miR-4586 MIMAT0019619 Petromyzon marinus miR-4586
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 3 agagtt 8
>pab-miR1311 MIMAT0018162 Picea abies miR1311
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 3 agagtt 8
>hsa-miR-3664-5p MIMAT0018086 Homo sapiens miR-3664-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagtt 6
||||||
Sbjct: 6 agagtt 1
>aly-miR402-3p MIMAT0017682 Arabidopsis lyrata miR402-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 3 agagtt 8
>aly-miR781-5p MIMAT0017597 Arabidopsis lyrata miR781-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 3 agagtt 8
>mmu-miR-3087-3p MIMAT0014896 Mus musculus miR-3087-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtta 7
||||||
Sbjct: 6 gagtta 1
>cte-miR-2688-3p MIMAT0013541 Capitella teleta miR-2688-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtta 7
||||||
Sbjct: 6 gagtta 1
>cte-miR-2685-3p MIMAT0013533 Capitella teleta miR-2685-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtta 7
||||||
Sbjct: 6 gagtta 1
>zma-miR2275d-5p MIMAT0011773 Zea mays miR2275d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>zma-miR2275a-5p MIMAT0011767 Zea mays miR2275a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>crm-miR-63-5p MIMAT0011622 Caenorhabditis remanei miR-63-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtta 7
||||||
Sbjct: 8 gagtta 3
>osa-miR2090 MIMAT0010045 Oryza sativa miR2090
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agagtt 6
||||||
Sbjct: 6 agagtt 1
>mtr-miR1507-5p MIMAT0010030 Medicago truncatula miR1507-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>ppt-miR2079 MIMAT0010016 Physcomitrella patens miR2079
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>pta-miR1311 MIMAT0009128 Pinus taeda miR1311
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 3 agagtt 8
>ptr-miR-219-1-3p MIMAT0008074 Pan troglodytes miR-219-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>gma-miR1527 MIMAT0007389 Glycine max miR1527
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtta 7
||||||
Sbjct: 6 gagtta 1
>gga-miR-1451-3p MIMAT0007325 Gallus gallus miR-1451-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtta 7
||||||
Sbjct: 8 gagtta 3
>smo-miR1084 MIMAT0005235 Selaginella moellendorffii miR1084
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtta 7
||||||
Sbjct: 6 gagtta 1
>cel-miR-792-5p MIMAT0020351 Caenorhabditis elegans miR-792-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 3 agagtt 8
>ath-miR781a MIMAT0003940 Arabidopsis thaliana miR781a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 3 agagtt 8
>mghv-miR-M1-5-5p MIMAT0001568 Mouse gammaherpesvirus
miR-M1-5-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>rno-miR-219a-1-3p MIMAT0004741 Rattus norvegicus miR-219a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>rno-miR-214-5p MIMAT0017159 Rattus norvegicus miR-214-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>mmu-miR-219a-1-3p MIMAT0017055 Mus musculus miR-219a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>hsa-miR-219a-1-3p MIMAT0004567 Homo sapiens miR-219a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agagtt 6
||||||
Sbjct: 1 agagtt 6
>cel-miR-63-5p MIMAT0015104 Caenorhabditis elegans miR-63-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gagtta 7
||||||
Sbjct: 8 gagtta 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 71
Number of extensions: 67
Number of successful extensions: 53
Number of sequences better than 100.0: 53
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 53
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)