BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m6-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssa-miR-193-5p MIMAT0032445 Salmo salar miR-193-5p 14 20
cbn-miR-7635 MIMAT0029678 Caenorhabditis brenneri miR-7635 14 20
ghr-miR7491 MIMAT0029133 Gossypium hirsutum miR7491 14 20
mml-miR-769-3p MIMAT0028335 Macaca mulatta miR-769-3p 14 20
dme-miR-4958-5p MIMAT0020177 Drosophila melanogaster miR-4958-5p 14 20
mdv1-miR-M6-3p MIMAT0003927 Mareks disease miR-M6-3p 14 20
ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p 12 80
eca-miR-9117 MIMAT0034666 Equus caballus miR-9117 12 80
cfa-miR-769 MIMAT0034400 Canis familiaris miR-769 12 80
gra-miR8635 MIMAT0033985 Gossypium raimondii miR8635 12 80
sma-miR-8421-3p MIMAT0033547 Schistosoma mansoni miR-8421-3p 12 80
str-miR-8384-5p MIMAT0033428 Strongyloides ratti miR-8384-5p 12 80
ppc-miR-8236-5p MIMAT0032926 Pristionchus pacificus miR-8236-5p 12 80
ath-miR8175 MIMAT0032774 Arabidopsis thaliana miR8175 12 80
prd-miR-7935-5p MIMAT0030726 Panagrellus redivivus miR-7935-5p 12 80
prd-miR-58-5p MIMAT0030560 Panagrellus redivivus miR-58-5p 12 80
crm-miR-7599 MIMAT0029616 Caenorhabditis remanei miR-7599 12 80
mml-miR-7177-3p MIMAT0028299 Macaca mulatta miR-7177-3p 12 80
dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p 12 80
ddi-miR-7095-3p MIMAT0028098 Dictyostelium discoideum miR-7095-3p 12 80
hsa-miR-6866-3p MIMAT0027633 Homo sapiens miR-6866-3p 12 80
gga-miR-6590-5p MIMAT0025682 Gallus gallus miR-6590-5p 12 80
mmu-miR-6364 MIMAT0025108 Mus musculus miR-6364 12 80
mse-miR-450 MIMAT0024497 Manduca sexta miR-450 12 80
mtr-miR5206b MIMAT0023152 Medicago truncatula miR5206b 12 80
mtr-miR5284h MIMAT0021342 Medicago truncatula miR5284h 12 80
mtr-miR5284b MIMAT0021336 Medicago truncatula miR5284b 12 80
mtr-miR5206a MIMAT0021137 Medicago truncatula miR5206a 12 80
hsa-miR-4713-3p MIMAT0019821 Homo sapiens miR-4713-3p 12 80
hvu-miR168-3p MIMAT0018216 Hordeum vulgare miR168-3p 12 80
ppy-miR-450b-3p MIMAT0015895 Pongo pygmaeus miR-450b-3p 12 80
mmu-miR-3471 MIMAT0015642 Mus musculus miR-3471 12 80
ssc-miR-769-3p MIMAT0013958 Sus scrofa miR-769-3p 12 80
eca-miR-769a-3p MIMAT0013016 Equus caballus miR-769a-3p 12 80
dps-miR-2557-3p MIMAT0012377 Drosophila pseudoobscura miR-2557-3p 12 80
dme-miR-2492-5p MIMAT0020913 Drosophila melanogaster miR-2492-5p 12 80
bta-miR-2471-5p MIMAT0012061 Bos taurus miR-2471-5p 12 80
ptr-miR-450b MIMAT0008152 Pan troglodytes miR-450b 12 80
mml-miR-450b-3p MIMAT0006334 Macaca mulatta miR-450b-3p 12 80
hsa-miR-450b-3p MIMAT0004910 Homo sapiens miR-450b-3p 12 80
ath-miR850 MIMAT0004272 Arabidopsis thaliana miR850 12 80
hsa-miR-769-3p MIMAT0003887 Homo sapiens miR-769-3p 12 80
ebv-miR-BART6-3p MIMAT0003415 Epstein Barr miR-BART6-3p 12 80
osa-miR168a-3p MIMAT0015122 Oryza sativa miR168a-3p 12 80
>ssa-miR-193-5p MIMAT0032445 Salmo salar miR-193-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatccc 7
|||||||
Sbjct: 8 agatccc 2
>cbn-miR-7635 MIMAT0029678 Caenorhabditis brenneri miR-7635
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatccc 7
|||||||
Sbjct: 8 agatccc 2
>ghr-miR7491 MIMAT0029133 Gossypium hirsutum miR7491
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatccc 7
|||||||
Sbjct: 8 agatccc 2
>mml-miR-769-3p MIMAT0028335 Macaca mulatta miR-769-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatccc 7
|||||||
Sbjct: 8 agatccc 2
>dme-miR-4958-5p MIMAT0020177 Drosophila melanogaster
miR-4958-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatccc 7
|||||||
Sbjct: 7 agatccc 1
>mdv1-miR-M6-3p MIMAT0003927 Mareks disease miR-M6-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agatccc 7
|||||||
Sbjct: 2 agatccc 8
>ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 7 gatccc 2
>eca-miR-9117 MIMAT0034666 Equus caballus miR-9117
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>cfa-miR-769 MIMAT0034400 Canis familiaris miR-769
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>gra-miR8635 MIMAT0033985 Gossypium raimondii miR8635
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatcc 6
||||||
Sbjct: 8 agatcc 3
>sma-miR-8421-3p MIMAT0033547 Schistosoma mansoni miR-8421-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatcc 6
||||||
Sbjct: 6 agatcc 1
>str-miR-8384-5p MIMAT0033428 Strongyloides ratti miR-8384-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatcc 6
||||||
Sbjct: 8 agatcc 3
>ppc-miR-8236-5p MIMAT0032926 Pristionchus pacificus miR-8236-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 6 gatccc 1
>ath-miR8175 MIMAT0032774 Arabidopsis thaliana miR8175
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatccc 7
||||||
Sbjct: 1 gatccc 6
>prd-miR-7935-5p MIMAT0030726 Panagrellus redivivus miR-7935-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatccc 7
||||||
Sbjct: 3 gatccc 8
>prd-miR-58-5p MIMAT0030560 Panagrellus redivivus miR-58-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatcc 6
||||||
Sbjct: 8 agatcc 3
>crm-miR-7599 MIMAT0029616 Caenorhabditis remanei miR-7599
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 7 gatccc 2
>mml-miR-7177-3p MIMAT0028299 Macaca mulatta miR-7177-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatccc 7
||||||
Sbjct: 3 gatccc 8
>dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 6 gatccc 1
>ddi-miR-7095-3p MIMAT0028098 Dictyostelium discoideum
miR-7095-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatcc 6
||||||
Sbjct: 6 agatcc 1
>hsa-miR-6866-3p MIMAT0027633 Homo sapiens miR-6866-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatccc 7
||||||
Sbjct: 1 gatccc 6
>gga-miR-6590-5p MIMAT0025682 Gallus gallus miR-6590-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 7 gatccc 2
>mmu-miR-6364 MIMAT0025108 Mus musculus miR-6364
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatccc 7
||||||
Sbjct: 3 gatccc 8
>mse-miR-450 MIMAT0024497 Manduca sexta miR-450
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 6 gatccc 1
>mtr-miR5206b MIMAT0023152 Medicago truncatula miR5206b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>mtr-miR5284h MIMAT0021342 Medicago truncatula miR5284h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>mtr-miR5284b MIMAT0021336 Medicago truncatula miR5284b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>mtr-miR5206a MIMAT0021137 Medicago truncatula miR5206a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>hsa-miR-4713-3p MIMAT0019821 Homo sapiens miR-4713-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 7 gatccc 2
>hvu-miR168-3p MIMAT0018216 Hordeum vulgare miR168-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatccc 7
||||||
Sbjct: 1 gatccc 6
>ppy-miR-450b-3p MIMAT0015895 Pongo pygmaeus miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>mmu-miR-3471 MIMAT0015642 Mus musculus miR-3471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatcc 6
||||||
Sbjct: 3 agatcc 8
>ssc-miR-769-3p MIMAT0013958 Sus scrofa miR-769-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>eca-miR-769a-3p MIMAT0013016 Equus caballus miR-769a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>dps-miR-2557-3p MIMAT0012377 Drosophila pseudoobscura
miR-2557-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatcc 6
||||||
Sbjct: 3 agatcc 8
>dme-miR-2492-5p MIMAT0020913 Drosophila melanogaster
miR-2492-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>bta-miR-2471-5p MIMAT0012061 Bos taurus miR-2471-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatcc 6
||||||
Sbjct: 8 agatcc 3
>ptr-miR-450b MIMAT0008152 Pan troglodytes miR-450b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>mml-miR-450b-3p MIMAT0006334 Macaca mulatta miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>hsa-miR-450b-3p MIMAT0004910 Homo sapiens miR-450b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>ath-miR850 MIMAT0004272 Arabidopsis thaliana miR850
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatcc 6
||||||
Sbjct: 3 agatcc 8
>hsa-miR-769-3p MIMAT0003887 Homo sapiens miR-769-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>ebv-miR-BART6-3p MIMAT0003415 Epstein Barr miR-BART6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatccc 7
||||||
Sbjct: 8 gatccc 3
>osa-miR168a-3p MIMAT0015122 Oryza sativa miR168a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatccc 7
||||||
Sbjct: 1 gatccc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 63
Number of extensions: 57
Number of successful extensions: 44
Number of sequences better than 100.0: 44
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 44
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
