BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rlcv-miR-rl1-18-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gra-miR8691 MIMAT0034064 Gossypium raimondii miR8691                   14      20
rlcv-miR-rL1-18-5p MIMAT0019186 Rhesus lymphocryptovirus miR-rL1...    14      20
ata-miR9772b-5p MIMAT0037154 Aegilops tauschii miR9772b-5p             12      80
ata-miR9772a-5p MIMAT0037106 Aegilops tauschii miR9772a-5p             12      80
tae-miR9772 MIMAT0036982 Triticum aestivum miR9772                     12      80
oha-miR-143-3p MIMAT0036724 Ophiophagus hannah miR-143-3p              12      80
tch-miR-143-3p MIMAT0036476 Tupaia chinensis miR-143-3p                12      80
gma-miR9760 MIMAT0036395 Glycine max miR9760                           12      80
chi-miR-2320 MIMAT0036083 Capra hircus miR-2320                        12      80
chi-miR-143-3p MIMAT0035964 Capra hircus miR-143-3p                    12      80
chi-miR-136-3p MIMAT0035956 Capra hircus miR-136-3p                    12      80
bra-miR172c-5p MIMAT0035872 Brassica rapa miR172c-5p                   12      80
tae-miR9674a-5p MIMAT0035793 Triticum aestivum miR9674a-5p             12      80
bra-miR9408-3p MIMAT0035658 Brassica rapa miR9408-3p                   12      80
efu-miR-9286 MIMAT0034940 Eptesicus fuscus miR-9286                    12      80
eca-miR-9070 MIMAT0034615 Equus caballus miR-9070                      12      80
eca-miR-8958 MIMAT0034492 Equus caballus miR-8958                      12      80
gra-miR167c MIMAT0034167 Gossypium raimondii miR167c                   12      80
sma-miR-8484-3p MIMAT0033690 Schistosoma mansoni miR-8484-3p           12      80
sma-miR-8482-3p MIMAT0033686 Schistosoma mansoni miR-8482-3p           12      80
ssa-miR-153a-2-5p MIMAT0032389 Salmo salar miR-153a-2-5p               12      80
ssa-miR-143-3p MIMAT0032366 Salmo salar miR-143-3p                     12      80
ppe-miR5225-3p MIMAT0031549 Prunus persica miR5225-3p                  12      80
ppe-miR827 MIMAT0031516 Prunus persica miR827                          12      80
stu-miR827-3p MIMAT0031273 Solanum tuberosum miR827-3p                 12      80
stu-miR5304-3p MIMAT0031236 Solanum tuberosum miR5304-3p               12      80
rgl-miR7803b-5p MIMAT0032252 Rehmannia glutinosa miR7803b-5p           12      80
oar-miR-143 MIMAT0030032 Ovis aries miR-143                            12      80
crm-miR-392 MIMAT0029632 Caenorhabditis remanei miR-392                12      80
ipu-miR-143 MIMAT0029420 Ictalurus punctatus miR-143                   12      80
aja-miR-143 MIMAT0031147 Artibeus jamaicensis miR-143                  12      80
mes-miR827 MIMAT0029302 Manihot esculenta miR827                       12      80
oan-miR-7433-3p MIMAT0029017 Ornithorhynchus anatinus miR-7433-3p      12      80
mdo-miR-7377-3p MIMAT0028811 Monodelphis domestica miR-7377-3p         12      80
mdo-miR-7296-3p MIMAT0028577 Monodelphis domestica miR-7296-3p         12      80
dev-miR-D5-5p MIMAT0028174 Duck enteritis miR-D5-5p                    12      80
ccr-miR-143 MIMAT0026224 Cyprinus carpio miR-143                       12      80
mdm-miR827 MIMAT0026028 Malus domestica miR827                         12      80
mdm-miR167a MIMAT0025922 Malus domestica miR167a                       12      80
mmu-miR-6967-3p MIMAT0027837 Mus musculus miR-6967-3p                  12      80
mmu-miR-6938-3p MIMAT0027777 Mus musculus miR-6938-3p                  12      80
gga-miR-6632-5p MIMAT0025728 Gallus gallus miR-6632-5p                 12      80
gga-miR-6595-5p MIMAT0025689 Gallus gallus miR-6595-5p                 12      80
ptc-miR6430 MIMAT0025231 Populus trichocarpa miR6430                   12      80
ptc-miR6463 MIMAT0025189 Populus trichocarpa miR6463                   12      80
nta-miR827 MIMAT0024725 Nicotiana tabacum miR827                       12      80
cgr-miR-143 MIMAT0023772 Cricetulus griseus miR-143                    12      80
hsa-miR-6088 MIMAT0023713 Homo sapiens miR-6088                        12      80
hco-miR-5979 MIMAT0023489 Haemonchus contortus miR-5979                12      80
hco-miR-5971 MIMAT0023478 Haemonchus contortus miR-5971                12      80
hco-miR-5908-5p MIMAT0023362 Haemonchus contortus miR-5908-5p          12      80
ola-miR-143 MIMAT0022668 Oryzias latipes miR-143                       12      80
ath-miR5658 MIMAT0022431 Arabidopsis thaliana miR5658                  12      80
aca-miR-5466 MIMAT0022099 Anolis carolinensis miR-5466                 12      80
aca-miR-143-3p MIMAT0021770 Anolis carolinensis miR-143-3p             12      80
ssp-miR827 MIMAT0020279 Saccharum sp. miR827                           12      80
bdi-miR827-3p MIMAT0020703 Brachypodium distachyon miR827-3p           12      80
gma-miR5041-5p MIMAT0021070 Glycine max miR5041-5p                     12      80
cel-miR-4938 MIMAT0020144 Caenorhabditis elegans miR-4938              12      80
tcc-miR827 MIMAT0020449 Theobroma cacao miR827                         12      80
hsa-miR-1245b-3p MIMAT0019951 Homo sapiens miR-1245b-3p                12      80
hsa-miR-4770 MIMAT0019924 Homo sapiens miR-4770                        12      80
pma-miR-143-3p MIMAT0019473 Petromyzon marinus miR-143-3p              12      80
csi-miR827 MIMAT0018485 Citrus sinensis miR827                         12      80
tca-miR-309a-5p MIMAT0018750 Tribolium castaneum miR-309a-5p           12      80
cin-miR-4186-5p MIMAT0016804 Ciona intestinalis miR-4186-5p            12      80
cin-miR-4024-3p MIMAT0016540 Ciona intestinalis miR-4024-3p            12      80
ath-miR774b-5p MIMAT0017739 Arabidopsis thaliana miR774b-5p            12      80
aly-miR774b-5p MIMAT0017699 Arabidopsis lyrata miR774b-5p              12      80
aly-miR827-3p MIMAT0017608 Arabidopsis lyrata miR827-3p                12      80
bmo-miR-3221 MIMAT0015401 Bombyx mori miR-3221                         12      80
mmu-miR-3071-3p MIMAT0014851 Mus musculus miR-3071-3p                  12      80
ghr-miR827c MIMAT0014343 Gossypium hirsutum miR827c                    12      80
ghr-miR827b MIMAT0014342 Gossypium hirsutum miR827b                    12      80
ghr-miR827a MIMAT0014341 Gossypium hirsutum miR827a                    12      80
zma-miR827-3p MIMAT0014031 Zea mays miR827-3p                          12      80
ssc-miR-143-3p MIMAT0013879 Sus scrofa miR-143-3p                      12      80
eca-miR-143 MIMAT0013063 Equus caballus miR-143                        12      80
bta-miR-2320-3p MIMAT0011845 Bos taurus miR-2320-3p                    12      80
cel-miR-2209b-3p MIMAT0011454 Caenorhabditis elegans miR-2209b-3p      12      80
sme-miR-36c-5p MIMAT0012158 Schmidtea mediterranea miR-36c-5p          12      80
osa-miR827 MIMAT0009981 Oryza sativa miR827                            12      80
bta-miR-143 MIMAT0009233 Bos taurus miR-143                            12      80
ptr-miR-1322 MIMAT0008027 Pan troglodytes miR-1322                     12      80
ptr-miR-1272 MIMAT0007993 Pan troglodytes miR-1272                     12      80
ath-miR1886.2 MIMAT0012129 Arabidopsis thaliana miR1886.2              12      80
osa-miR1877 MIMAT0007834 Oryza sativa miR1877                          12      80
cfa-miR-143 MIMAT0006682 Canis familiaris miR-143                      12      80
mml-miR-143-3p MIMAT0006201 Macaca mulatta miR-143-3p                  12      80
gga-miR-1721 MIMAT0007619 Gallus gallus miR-1721                       12      80
gga-miR-1719 MIMAT0007616 Gallus gallus miR-1719                       12      80
gga-miR-1710 MIMAT0007605 Gallus gallus miR-1710                       12      80
ptc-miR827 MIMAT0006003 Populus trichocarpa miR827                     12      80
oan-miR-143-3p MIMAT0007144 Ornithorhynchus anatinus miR-143-3p        12      80
hsa-miR-1322 MIMAT0005953 Homo sapiens miR-1322                        12      80
hsa-miR-1272 MIMAT0005925 Homo sapiens miR-1272                        12      80
smo-miR1089 MIMAT0005242 Selaginella moellendorffii miR1089            12      80
cbr-miR-392 MIMAT0004299 Caenorhabditis briggsae miR-392               12      80
ath-miR827 MIMAT0004243 Arabidopsis thaliana miR827                    12      80
mdo-miR-143-3p MIMAT0004113 Monodelphis domestica miR-143-3p           12      80
xtr-miR-143 MIMAT0003686 Xenopus tropicalis miR-143                    12      80
ppa-miR-143 MIMAT0002261 Pan paniscus miR-143                          12      80
lla-miR-143 MIMAT0002260 Lagothrix lagotricha miR-143                  12      80
ppy-miR-143 MIMAT0002259 Pongo pygmaeus miR-143                        12      80
ggo-miR-143 MIMAT0002258 Gorilla gorilla miR-143                       12      80
ptr-miR-143 MIMAT0002257 Pan troglodytes miR-143                       12      80
dre-miR-143 MIMAT0001840 Danio rerio miR-143                           12      80
ath-miR414 MIMAT0001322 Arabidopsis thaliana miR414                    12      80
rno-miR-143-3p MIMAT0000849 Rattus norvegicus miR-143-3p               12      80
cel-miR-392-3p MIMAT0000768 Caenorhabditis elegans miR-392-3p          12      80
hsa-miR-143-3p MIMAT0000435 Homo sapiens miR-143-3p                    12      80
mmu-miR-143-3p MIMAT0000247 Mus musculus miR-143-3p                    12      80
mmu-miR-136-3p MIMAT0004532 Mus musculus miR-136-3p                    12      80
>gra-miR8691 MIMAT0034064 Gossypium raimondii miR8691
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agatgat 7
         |||||||
Sbjct: 1 agatgat 7
>rlcv-miR-rL1-18-5p MIMAT0019186 Rhesus lymphocryptovirus
         miR-rL1-18-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agatgat 7
         |||||||
Sbjct: 2 agatgat 8
>ata-miR9772b-5p MIMAT0037154 Aegilops tauschii miR9772b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ata-miR9772a-5p MIMAT0037106 Aegilops tauschii miR9772a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>tae-miR9772 MIMAT0036982 Triticum aestivum miR9772
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>oha-miR-143-3p MIMAT0036724 Ophiophagus hannah miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>tch-miR-143-3p MIMAT0036476 Tupaia chinensis miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>gma-miR9760 MIMAT0036395 Glycine max miR9760
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 3 gatgat 8
>chi-miR-2320 MIMAT0036083 Capra hircus miR-2320
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 3 gatgat 8
>chi-miR-143-3p MIMAT0035964 Capra hircus miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>chi-miR-136-3p MIMAT0035956 Capra hircus miR-136-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 6 gatgat 1
>bra-miR172c-5p MIMAT0035872 Brassica rapa miR172c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 8 gatgat 3
>tae-miR9674a-5p MIMAT0035793 Triticum aestivum miR9674a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 8 gatgat 3
>bra-miR9408-3p MIMAT0035658 Brassica rapa miR9408-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 8 agatga 3
>efu-miR-9286 MIMAT0034940 Eptesicus fuscus miR-9286
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 8 agatga 3
>eca-miR-9070 MIMAT0034615 Equus caballus miR-9070
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>eca-miR-8958 MIMAT0034492 Equus caballus miR-8958
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 2 gatgat 7
>gra-miR167c MIMAT0034167 Gossypium raimondii miR167c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>sma-miR-8484-3p MIMAT0033690 Schistosoma mansoni miR-8484-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 8 gatgat 3
>sma-miR-8482-3p MIMAT0033686 Schistosoma mansoni miR-8482-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ssa-miR-153a-2-5p MIMAT0032389 Salmo salar miR-153a-2-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 6 agatga 1
>ssa-miR-143-3p MIMAT0032366 Salmo salar miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ppe-miR5225-3p MIMAT0031549 Prunus persica miR5225-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 6 agatga 1
>ppe-miR827 MIMAT0031516 Prunus persica miR827
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>stu-miR827-3p MIMAT0031273 Solanum tuberosum miR827-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>stu-miR5304-3p MIMAT0031236 Solanum tuberosum miR5304-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 1 agatga 6
>rgl-miR7803b-5p MIMAT0032252 Rehmannia glutinosa miR7803b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 2 gatgat 7
>oar-miR-143 MIMAT0030032 Ovis aries miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>crm-miR-392 MIMAT0029632 Caenorhabditis remanei miR-392
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 6 gatgat 1
>ipu-miR-143 MIMAT0029420 Ictalurus punctatus miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>aja-miR-143 MIMAT0031147 Artibeus jamaicensis miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>mes-miR827 MIMAT0029302 Manihot esculenta miR827
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>oan-miR-7433-3p MIMAT0029017 Ornithorhynchus anatinus
         miR-7433-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 3 gatgat 8
>mdo-miR-7377-3p MIMAT0028811 Monodelphis domestica miR-7377-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 6 gatgat 1
>mdo-miR-7296-3p MIMAT0028577 Monodelphis domestica miR-7296-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>dev-miR-D5-5p MIMAT0028174 Duck enteritis miR-D5-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 8 agatga 3
>ccr-miR-143 MIMAT0026224 Cyprinus carpio miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>mdm-miR827 MIMAT0026028 Malus domestica miR827
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>mdm-miR167a MIMAT0025922 Malus domestica miR167a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 8 gatgat 3
>mmu-miR-6967-3p MIMAT0027837 Mus musculus miR-6967-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 6 agatga 1
>mmu-miR-6938-3p MIMAT0027777 Mus musculus miR-6938-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 6 agatga 1
>gga-miR-6632-5p MIMAT0025728 Gallus gallus miR-6632-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>gga-miR-6595-5p MIMAT0025689 Gallus gallus miR-6595-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ptc-miR6430 MIMAT0025231 Populus trichocarpa miR6430
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 2 gatgat 7
>ptc-miR6463 MIMAT0025189 Populus trichocarpa miR6463
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 3 gatgat 8
>nta-miR827 MIMAT0024725 Nicotiana tabacum miR827
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>cgr-miR-143 MIMAT0023772 Cricetulus griseus miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>hsa-miR-6088 MIMAT0023713 Homo sapiens miR-6088
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>hco-miR-5979 MIMAT0023489 Haemonchus contortus miR-5979
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 3 gatgat 8
>hco-miR-5971 MIMAT0023478 Haemonchus contortus miR-5971
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>hco-miR-5908-5p MIMAT0023362 Haemonchus contortus miR-5908-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 1 gatgat 6
>ola-miR-143 MIMAT0022668 Oryzias latipes miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ath-miR5658 MIMAT0022431 Arabidopsis thaliana miR5658
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 3 gatgat 8
>aca-miR-5466 MIMAT0022099 Anolis carolinensis miR-5466
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 3 gatgat 8
>aca-miR-143-3p MIMAT0021770 Anolis carolinensis miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ssp-miR827 MIMAT0020279 Saccharum sp. miR827
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>bdi-miR827-3p MIMAT0020703 Brachypodium distachyon miR827-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>gma-miR5041-5p MIMAT0021070 Glycine max miR5041-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 8 agatga 3
>cel-miR-4938 MIMAT0020144 Caenorhabditis elegans miR-4938
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 6 gatgat 1
>tcc-miR827 MIMAT0020449 Theobroma cacao miR827
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>hsa-miR-1245b-3p MIMAT0019951 Homo sapiens miR-1245b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>hsa-miR-4770 MIMAT0019924 Homo sapiens miR-4770
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>pma-miR-143-3p MIMAT0019473 Petromyzon marinus miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>csi-miR827 MIMAT0018485 Citrus sinensis miR827
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>tca-miR-309a-5p MIMAT0018750 Tribolium castaneum miR-309a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 1 agatga 6
>cin-miR-4186-5p MIMAT0016804 Ciona intestinalis miR-4186-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>cin-miR-4024-3p MIMAT0016540 Ciona intestinalis miR-4024-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 8 agatga 3
>ath-miR774b-5p MIMAT0017739 Arabidopsis thaliana miR774b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>aly-miR774b-5p MIMAT0017699 Arabidopsis lyrata miR774b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>aly-miR827-3p MIMAT0017608 Arabidopsis lyrata miR827-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>bmo-miR-3221 MIMAT0015401 Bombyx mori miR-3221
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 8 agatga 3
>mmu-miR-3071-3p MIMAT0014851 Mus musculus miR-3071-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 6 gatgat 1
>ghr-miR827c MIMAT0014343 Gossypium hirsutum miR827c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ghr-miR827b MIMAT0014342 Gossypium hirsutum miR827b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ghr-miR827a MIMAT0014341 Gossypium hirsutum miR827a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>zma-miR827-3p MIMAT0014031 Zea mays miR827-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ssc-miR-143-3p MIMAT0013879 Sus scrofa miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>eca-miR-143 MIMAT0013063 Equus caballus miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>bta-miR-2320-3p MIMAT0011845 Bos taurus miR-2320-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 3 gatgat 8
>cel-miR-2209b-3p MIMAT0011454 Caenorhabditis elegans
         miR-2209b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>sme-miR-36c-5p MIMAT0012158 Schmidtea mediterranea miR-36c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 2 gatgat 7
>osa-miR827 MIMAT0009981 Oryza sativa miR827
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>bta-miR-143 MIMAT0009233 Bos taurus miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ptr-miR-1322 MIMAT0008027 Pan troglodytes miR-1322
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 1 gatgat 6
>ptr-miR-1272 MIMAT0007993 Pan troglodytes miR-1272
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 1 gatgat 6
>ath-miR1886.2 MIMAT0012129 Arabidopsis thaliana miR1886.2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>osa-miR1877 MIMAT0007834 Oryza sativa miR1877
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 1 agatga 6
>cfa-miR-143 MIMAT0006682 Canis familiaris miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>mml-miR-143-3p MIMAT0006201 Macaca mulatta miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>gga-miR-1721 MIMAT0007619 Gallus gallus miR-1721
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>gga-miR-1719 MIMAT0007616 Gallus gallus miR-1719
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>gga-miR-1710 MIMAT0007605 Gallus gallus miR-1710
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 6 agatga 1
>ptc-miR827 MIMAT0006003 Populus trichocarpa miR827
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>oan-miR-143-3p MIMAT0007144 Ornithorhynchus anatinus miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>hsa-miR-1322 MIMAT0005953 Homo sapiens miR-1322
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 1 gatgat 6
>hsa-miR-1272 MIMAT0005925 Homo sapiens miR-1272
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 1 gatgat 6
>smo-miR1089 MIMAT0005242 Selaginella moellendorffii miR1089
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 8 gatgat 3
>cbr-miR-392 MIMAT0004299 Caenorhabditis briggsae miR-392
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 7 gatgat 2
>ath-miR827 MIMAT0004243 Arabidopsis thaliana miR827
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>mdo-miR-143-3p MIMAT0004113 Monodelphis domestica miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>xtr-miR-143 MIMAT0003686 Xenopus tropicalis miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ppa-miR-143 MIMAT0002261 Pan paniscus miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>lla-miR-143 MIMAT0002260 Lagothrix lagotricha miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ppy-miR-143 MIMAT0002259 Pongo pygmaeus miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ggo-miR-143 MIMAT0002258 Gorilla gorilla miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ptr-miR-143 MIMAT0002257 Pan troglodytes miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>dre-miR-143 MIMAT0001840 Danio rerio miR-143
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>ath-miR414 MIMAT0001322 Arabidopsis thaliana miR414
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 agatga 6
         ||||||
Sbjct: 6 agatga 1
>rno-miR-143-3p MIMAT0000849 Rattus norvegicus miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>cel-miR-392-3p MIMAT0000768 Caenorhabditis elegans miR-392-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 7 gatgat 2
>hsa-miR-143-3p MIMAT0000435 Homo sapiens miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>mmu-miR-143-3p MIMAT0000247 Mus musculus miR-143-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 agatga 6
         ||||||
Sbjct: 3 agatga 8
>mmu-miR-136-3p MIMAT0004532 Mus musculus miR-136-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgat 7
         ||||||
Sbjct: 6 gatgat 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 132
Number of extensions: 130
Number of successful extensions: 113
Number of sequences better than 100.0: 113
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 113
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)