BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-34-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-8092 MIMAT0031393 Mus musculus miR-8092 14 20
osa-miR5508 MIMAT0022141 Oryza sativa miR5508 14 20
rlcv-miR-rL1-34-5p MIMAT0016960 Rhesus lymphocryptovirus miR-rL1... 14 20
tae-miR9666b-5p MIMAT0035812 Triticum aestivum miR9666b-5p 12 80
tae-miR9666c-5p MIMAT0035784 Triticum aestivum miR9666c-5p 12 80
efu-miR-8915 MIMAT0035179 Eptesicus fuscus miR-8915 12 80
efu-miR-9300 MIMAT0034968 Eptesicus fuscus miR-9300 12 80
eca-miR-9048 MIMAT0034592 Equus caballus miR-9048 12 80
atr-miR2950 MIMAT0033951 Amborella trichopoda miR2950 12 80
str-miR-8371-5p MIMAT0033366 Strongyloides ratti miR-8371-5p 12 80
stu-miR8048-3p MIMAT0030972 Solanum tuberosum miR8048-3p 12 80
ptc-miR7821 MIMAT0030402 Populus trichocarpa miR7821 12 80
bdi-miR7777-3p.2 MIMAT0030308 Brachypodium distachyon miR7777-3p.2 12 80
bdi-miR7744-5p MIMAT0030228 Brachypodium distachyon miR7744-5p 12 80
mmu-miR-7667-5p MIMAT0029840 Mus musculus miR-7667-5p 12 80
mes-miR2950 MIMAT0029309 Manihot esculenta miR2950 12 80
gga-miR-7460-5p MIMAT0029074 Gallus gallus miR-7460-5p 12 80
mdo-miR-7268-3p MIMAT0028507 Monodelphis domestica miR-7268-3p 12 80
mmu-miR-7239-5p MIMAT0028446 Mus musculus miR-7239-5p 12 80
gga-miR-6620-5p MIMAT0025716 Gallus gallus miR-6620-5p 12 80
gga-miR-6572-3p MIMAT0025652 Gallus gallus miR-6572-3p 12 80
hbr-miR482a MIMAT0024787 Hevea brasiliensis miR482a 12 80
cin-miR-5605-5p MIMAT0022337 Ciona intestinalis miR-5605-5p 12 80
cel-miR-5593-5p MIMAT0022307 Caenorhabditis elegans miR-5593-5p 12 80
hsa-miR-1273f MIMAT0020601 Homo sapiens miR-1273f 12 80
gma-miR2118b-5p MIMAT0022982 Glycine max miR2118b-5p 12 80
gma-miR2118a-5p MIMAT0022981 Glycine max miR2118a-5p 12 80
hsa-miR-4662b MIMAT0019736 Homo sapiens miR-4662b 12 80
hsa-miR-4647 MIMAT0019709 Homo sapiens miR-4647 12 80
hsa-miR-4529-5p MIMAT0019236 Homo sapiens miR-4529-5p 12 80
hsa-miR-4426 MIMAT0018941 Homo sapiens miR-4426 12 80
vvi-miR2950-5p MIMAT0018009 Vitis vinifera miR2950-5p 12 80
aly-miR844-3p MIMAT0017630 Arabidopsis lyrata miR844-3p 12 80
ssc-miR-432-3p MIMAT0017384 Sus scrofa miR-432-3p 12 80
bmo-miR-2837 MIMAT0013751 Bombyx mori miR-2837 12 80
bta-miR-2417 MIMAT0011981 Bos taurus miR-2417 12 80
osa-miR2097-5p MIMAT0010058 Oryza sativa miR2097-5p 12 80
mml-miR-432-3p MIMAT0026874 Macaca mulatta miR-432-3p 12 80
>mmu-miR-8092 MIMAT0031393 Mus musculus miR-8092
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agatggc 7
|||||||
Sbjct: 7 agatggc 1
>osa-miR5508 MIMAT0022141 Oryza sativa miR5508
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agatggc 7
|||||||
Sbjct: 2 agatggc 8
>rlcv-miR-rL1-34-5p MIMAT0016960 Rhesus lymphocryptovirus
miR-rL1-34-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agatggc 7
|||||||
Sbjct: 2 agatggc 8
>tae-miR9666b-5p MIMAT0035812 Triticum aestivum miR9666b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatggc 7
||||||
Sbjct: 6 gatggc 1
>tae-miR9666c-5p MIMAT0035784 Triticum aestivum miR9666c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatggc 7
||||||
Sbjct: 6 gatggc 1
>efu-miR-8915 MIMAT0035179 Eptesicus fuscus miR-8915
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatggc 7
||||||
Sbjct: 3 gatggc 8
>efu-miR-9300 MIMAT0034968 Eptesicus fuscus miR-9300
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatggc 7
||||||
Sbjct: 8 gatggc 3
>eca-miR-9048 MIMAT0034592 Equus caballus miR-9048
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatgg 6
||||||
Sbjct: 6 agatgg 1
>atr-miR2950 MIMAT0033951 Amborella trichopoda miR2950
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatgg 6
||||||
Sbjct: 8 agatgg 3
>str-miR-8371-5p MIMAT0033366 Strongyloides ratti miR-8371-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 1 agatgg 6
>stu-miR8048-3p MIMAT0030972 Solanum tuberosum miR8048-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 1 agatgg 6
>ptc-miR7821 MIMAT0030402 Populus trichocarpa miR7821
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 1 agatgg 6
>bdi-miR7777-3p.2 MIMAT0030308 Brachypodium distachyon
miR7777-3p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 3 agatgg 8
>bdi-miR7744-5p MIMAT0030228 Brachypodium distachyon miR7744-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatggc 7
||||||
Sbjct: 3 gatggc 8
>mmu-miR-7667-5p MIMAT0029840 Mus musculus miR-7667-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatggc 7
||||||
Sbjct: 8 gatggc 3
>mes-miR2950 MIMAT0029309 Manihot esculenta miR2950
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatgg 6
||||||
Sbjct: 8 agatgg 3
>gga-miR-7460-5p MIMAT0029074 Gallus gallus miR-7460-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatggc 7
||||||
Sbjct: 1 gatggc 6
>mdo-miR-7268-3p MIMAT0028507 Monodelphis domestica miR-7268-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatggc 7
||||||
Sbjct: 3 gatggc 8
>mmu-miR-7239-5p MIMAT0028446 Mus musculus miR-7239-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatggc 7
||||||
Sbjct: 6 gatggc 1
>gga-miR-6620-5p MIMAT0025716 Gallus gallus miR-6620-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 3 agatgg 8
>gga-miR-6572-3p MIMAT0025652 Gallus gallus miR-6572-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 1 agatgg 6
>hbr-miR482a MIMAT0024787 Hevea brasiliensis miR482a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 1 agatgg 6
>cin-miR-5605-5p MIMAT0022337 Ciona intestinalis miR-5605-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatgg 6
||||||
Sbjct: 8 agatgg 3
>cel-miR-5593-5p MIMAT0022307 Caenorhabditis elegans miR-5593-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatggc 7
||||||
Sbjct: 1 gatggc 6
>hsa-miR-1273f MIMAT0020601 Homo sapiens miR-1273f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 3 agatgg 8
>gma-miR2118b-5p MIMAT0022982 Glycine max miR2118b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 3 agatgg 8
>gma-miR2118a-5p MIMAT0022981 Glycine max miR2118a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 3 agatgg 8
>hsa-miR-4662b MIMAT0019736 Homo sapiens miR-4662b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 3 agatgg 8
>hsa-miR-4647 MIMAT0019709 Homo sapiens miR-4647
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 3 agatgg 8
>hsa-miR-4529-5p MIMAT0019236 Homo sapiens miR-4529-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatggc 7
||||||
Sbjct: 8 gatggc 3
>hsa-miR-4426 MIMAT0018941 Homo sapiens miR-4426
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 3 agatgg 8
>vvi-miR2950-5p MIMAT0018009 Vitis vinifera miR2950-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatgg 6
||||||
Sbjct: 8 agatgg 3
>aly-miR844-3p MIMAT0017630 Arabidopsis lyrata miR844-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agatgg 6
||||||
Sbjct: 6 agatgg 1
>ssc-miR-432-3p MIMAT0017384 Sus scrofa miR-432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatggc 7
||||||
Sbjct: 3 gatggc 8
>bmo-miR-2837 MIMAT0013751 Bombyx mori miR-2837
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 1 agatgg 6
>bta-miR-2417 MIMAT0011981 Bos taurus miR-2417
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 1 agatgg 6
>osa-miR2097-5p MIMAT0010058 Oryza sativa miR2097-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agatgg 6
||||||
Sbjct: 3 agatgg 8
>mml-miR-432-3p MIMAT0026874 Macaca mulatta miR-432-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatggc 7
||||||
Sbjct: 3 gatggc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 57
Number of extensions: 54
Number of successful extensions: 38
Number of sequences better than 100.0: 38
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 38
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)