BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-6-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mml-miR-1250 MIMAT0024334 Macaca mulatta miR-1250 14 20
ggo-miR-1250 MIMAT0024235 Gorilla gorilla miR-1250 14 20
ppy-miR-1250 MIMAT0016175 Pongo pygmaeus miR-1250 14 20
rno-miR-667-5p MIMAT0017369 Rattus norvegicus miR-667-5p 14 20
ptr-miR-1250 MIMAT0007976 Pan troglodytes miR-1250 14 20
hsa-miR-1250-5p MIMAT0005902 Homo sapiens miR-1250-5p 14 20
mmu-miR-667-5p MIMAT0017239 Mus musculus miR-667-5p 14 20
rlcv-miR-rL1-6-3p MIMAT0003435 Rhesus lymphocryptovirus miR-rL1-... 14 20
ebv-miR-BART1-3p MIMAT0003390 Epstein Barr miR-BART1-3p 14 20
ata-miR9674b-5p MIMAT0037256 Aegilops tauschii miR9674b-5p 12 80
ata-miR9674c-3p MIMAT0037195 Aegilops tauschii miR9674c-3p 12 80
ata-miR172b-5p MIMAT0037148 Aegilops tauschii miR172b-5p 12 80
sly-miR9471a-5p MIMAT0035447 Solanum lycopersicum miR9471a-5p 12 80
sly-miR9471b-5p MIMAT0035441 Solanum lycopersicum miR9471b-5p 12 80
efu-miR-29a MIMAT0035176 Eptesicus fuscus miR-29a 12 80
efu-miR-29b MIMAT0035175 Eptesicus fuscus miR-29b 12 80
efu-miR-9292 MIMAT0034952 Eptesicus fuscus miR-9292 12 80
efu-miR-29c MIMAT0034941 Eptesicus fuscus miR-29c 12 80
eca-miR-9128 MIMAT0034679 Equus caballus miR-9128 12 80
eca-miR-3065 MIMAT0034658 Equus caballus miR-3065 12 80
eca-miR-9069 MIMAT0034614 Equus caballus miR-9069 12 80
pxy-miR-8531 MIMAT0033774 Plutella xylostella miR-8531 12 80
ath-miR8180 MIMAT0032779 Arabidopsis thaliana miR8180 12 80
bbe-miR-216-3p MIMAT0031647 Branchiostoma belcheri miR-216-3p 12 80
stu-miR172b-5p MIMAT0031286 Solanum tuberosum miR172b-5p 12 80
mmu-miR-7676-3p MIMAT0029861 Mus musculus miR-7676-3p 12 80
mmu-miR-7668-3p MIMAT0029843 Mus musculus miR-7668-3p 12 80
gga-miR-7471-5p MIMAT0029096 Gallus gallus miR-7471-5p 12 80
mmu-miR-3547-3p MIMAT0027833 Mus musculus miR-3547-3p 12 80
mmu-miR-6959-3p MIMAT0027819 Mus musculus miR-6959-3p 12 80
mmu-miR-6929-3p MIMAT0027759 Mus musculus miR-6929-3p 12 80
gga-miR-6551-5p MIMAT0025609 Gallus gallus miR-6551-5p 12 80
ola-miR-29a MIMAT0022570 Oryzias latipes miR-29a 12 80
hsa-miR-5682 MIMAT0022470 Homo sapiens miR-5682 12 80
gma-miR172g MIMAT0021656 Glycine max miR172g 12 80
bdi-miR172a-5p MIMAT0027061 Brachypodium distachyon miR172a-5p 12 80
osa-miR5154 MIMAT0021104 Oryza sativa miR5154 12 80
hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p 12 80
tca-miR-3830-5p MIMAT0018690 Tribolium castaneum miR-3830-5p 12 80
hsa-miR-3663-3p MIMAT0018085 Homo sapiens miR-3663-3p 12 80
rno-miR-3065-3p MIMAT0017840 Rattus norvegicus miR-3065-3p 12 80
rno-miR-3547 MIMAT0017802 Rattus norvegicus miR-3547 12 80
aly-miR172e-5p MIMAT0017529 Arabidopsis lyrata miR172e-5p 12 80
aly-miR172b-5p MIMAT0017523 Arabidopsis lyrata miR172b-5p 12 80
hsa-miR-3065-3p MIMAT0015378 Homo sapiens miR-3065-3p 12 80
mmu-miR-3065-3p MIMAT0014837 Mus musculus miR-3065-3p 12 80
ssc-miR-29a MIMAT0013870 Sus scrofa miR-29a 12 80
eca-miR-764-5p MIMAT0013243 Equus caballus miR-764-5p 12 80
eca-miR-770-5p MIMAT0013174 Equus caballus miR-770-5p 12 80
rno-miR-764-5p MIMAT0012854 Rattus norvegicus miR-764-5p 12 80
ptr-miR-764 MIMAT0012818 Pan troglodytes miR-764 12 80
mml-miR-764 MIMAT0012794 Macaca mulatta miR-764 12 80
dre-miR-2185-5p MIMAT0011289 Danio rerio miR-2185-5p 12 80
bra-miR172b-5p MIMAT0010167 Brassica rapa miR172b-5p 12 80
bta-miR-764 MIMAT0009948 Bos taurus miR-764 12 80
cfa-miR-764 MIMAT0009937 Canis familiaris miR-764 12 80
bfl-miR-216-3p MIMAT0019150 Branchiostoma floridae miR-216-3p 12 80
bfl-miR-29b-3p MIMAT0009472 Branchiostoma floridae miR-29b-3p 12 80
gga-miR-1736-3p MIMAT0007639 Gallus gallus miR-1736-3p 12 80
rno-miR-770-5p MIMAT0005338 Rattus norvegicus miR-770-5p 12 80
smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107 12 80
bta-miR-29a MIMAT0003518 Bos taurus miR-29a 12 80
mmu-miR-764-5p MIMAT0003894 Mus musculus miR-764-5p 12 80
mmu-miR-770-5p MIMAT0004822 Mus musculus miR-770-5p 12 80
rlcv-miR-rL1-12-3p MIMAT0003442 Rhesus lymphocryptovirus miR-rL1... 12 80
mne-miR-29a MIMAT0002368 Macaca nemestrina miR-29a 12 80
lla-miR-29a MIMAT0002367 Lagothrix lagotricha miR-29a 12 80
sla-miR-29a MIMAT0002366 Saguinus labiatus miR-29a 12 80
mml-miR-29a-3p MIMAT0002365 Macaca mulatta miR-29a-3p 12 80
ptr-miR-29a MIMAT0002364 Pan troglodytes miR-29a 12 80
ppy-miR-29a MIMAT0002363 Pongo pygmaeus miR-29a 12 80
ppa-miR-29a MIMAT0002362 Pan paniscus miR-29a 12 80
age-miR-29a MIMAT0002361 Ateles geoffroyi miR-29a 12 80
ggo-miR-29a MIMAT0002360 Gorilla gorilla miR-29a 12 80
kshv-miR-K12-1-3p MIMAT0015214 Kaposi sarcoma-associated miR-K12... 12 80
ptc-miR172h-5p MIMAT0022906 Populus trichocarpa miR172h-5p 12 80
osa-miR172d-5p MIMAT0022885 Oryza sativa miR172d-5p 12 80
ath-miR172e-5p MIMAT0031918 Arabidopsis thaliana miR172e-5p 12 80
ath-miR172b-5p MIMAT0000204 Arabidopsis thaliana miR172b-5p 12 80
>mml-miR-1250 MIMAT0024334 Macaca mulatta miR-1250
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcaccg 7
|||||||
Sbjct: 8 agcaccg 2
>ggo-miR-1250 MIMAT0024235 Gorilla gorilla miR-1250
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcaccg 7
|||||||
Sbjct: 8 agcaccg 2
>ppy-miR-1250 MIMAT0016175 Pongo pygmaeus miR-1250
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcaccg 7
|||||||
Sbjct: 8 agcaccg 2
>rno-miR-667-5p MIMAT0017369 Rattus norvegicus miR-667-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcaccg 7
|||||||
Sbjct: 7 agcaccg 1
>ptr-miR-1250 MIMAT0007976 Pan troglodytes miR-1250
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcaccg 7
|||||||
Sbjct: 8 agcaccg 2
>hsa-miR-1250-5p MIMAT0005902 Homo sapiens miR-1250-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcaccg 7
|||||||
Sbjct: 8 agcaccg 2
>mmu-miR-667-5p MIMAT0017239 Mus musculus miR-667-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcaccg 7
|||||||
Sbjct: 7 agcaccg 1
>rlcv-miR-rL1-6-3p MIMAT0003435 Rhesus lymphocryptovirus
miR-rL1-6-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcaccg 7
|||||||
Sbjct: 2 agcaccg 8
>ebv-miR-BART1-3p MIMAT0003390 Epstein Barr miR-BART1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcaccg 7
|||||||
Sbjct: 2 agcaccg 8
>ata-miR9674b-5p MIMAT0037256 Aegilops tauschii miR9674b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 6 agcacc 1
>ata-miR9674c-3p MIMAT0037195 Aegilops tauschii miR9674c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 6 agcacc 1
>ata-miR172b-5p MIMAT0037148 Aegilops tauschii miR172b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>sly-miR9471a-5p MIMAT0035447 Solanum lycopersicum miR9471a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 8 agcacc 3
>sly-miR9471b-5p MIMAT0035441 Solanum lycopersicum miR9471b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 8 agcacc 3
>efu-miR-29a MIMAT0035176 Eptesicus fuscus miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>efu-miR-29b MIMAT0035175 Eptesicus fuscus miR-29b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>efu-miR-9292 MIMAT0034952 Eptesicus fuscus miR-9292
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 1 agcacc 6
>efu-miR-29c MIMAT0034941 Eptesicus fuscus miR-29c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>eca-miR-9128 MIMAT0034679 Equus caballus miR-9128
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 8 agcacc 3
>eca-miR-3065 MIMAT0034658 Equus caballus miR-3065
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>eca-miR-9069 MIMAT0034614 Equus caballus miR-9069
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 8 gcaccg 3
>pxy-miR-8531 MIMAT0033774 Plutella xylostella miR-8531
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 6 gcaccg 1
>ath-miR8180 MIMAT0032779 Arabidopsis thaliana miR8180
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 8 gcaccg 3
>bbe-miR-216-3p MIMAT0031647 Branchiostoma belcheri miR-216-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 8 gcaccg 3
>stu-miR172b-5p MIMAT0031286 Solanum tuberosum miR172b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>mmu-miR-7676-3p MIMAT0029861 Mus musculus miR-7676-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 8 gcaccg 3
>mmu-miR-7668-3p MIMAT0029843 Mus musculus miR-7668-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 6 gcaccg 1
>gga-miR-7471-5p MIMAT0029096 Gallus gallus miR-7471-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 8 gcaccg 3
>mmu-miR-3547-3p MIMAT0027833 Mus musculus miR-3547-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>mmu-miR-6959-3p MIMAT0027819 Mus musculus miR-6959-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcaccg 7
||||||
Sbjct: 3 gcaccg 8
>mmu-miR-6929-3p MIMAT0027759 Mus musculus miR-6929-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 8 agcacc 3
>gga-miR-6551-5p MIMAT0025609 Gallus gallus miR-6551-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 6 gcaccg 1
>ola-miR-29a MIMAT0022570 Oryzias latipes miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 1 agcacc 6
>hsa-miR-5682 MIMAT0022470 Homo sapiens miR-5682
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>gma-miR172g MIMAT0021656 Glycine max miR172g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>bdi-miR172a-5p MIMAT0027061 Brachypodium distachyon miR172a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>osa-miR5154 MIMAT0021104 Oryza sativa miR5154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 1 agcacc 6
>hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 8 gcaccg 3
>tca-miR-3830-5p MIMAT0018690 Tribolium castaneum miR-3830-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 8 gcaccg 3
>hsa-miR-3663-3p MIMAT0018085 Homo sapiens miR-3663-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>rno-miR-3065-3p MIMAT0017840 Rattus norvegicus miR-3065-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>rno-miR-3547 MIMAT0017802 Rattus norvegicus miR-3547
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>aly-miR172e-5p MIMAT0017529 Arabidopsis lyrata miR172e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>aly-miR172b-5p MIMAT0017523 Arabidopsis lyrata miR172b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>hsa-miR-3065-3p MIMAT0015378 Homo sapiens miR-3065-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>mmu-miR-3065-3p MIMAT0014837 Mus musculus miR-3065-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>ssc-miR-29a MIMAT0013870 Sus scrofa miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>eca-miR-764-5p MIMAT0013243 Equus caballus miR-764-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 6 agcacc 1
>eca-miR-770-5p MIMAT0013174 Equus caballus miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 1 agcacc 6
>rno-miR-764-5p MIMAT0012854 Rattus norvegicus miR-764-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 6 agcacc 1
>ptr-miR-764 MIMAT0012818 Pan troglodytes miR-764
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 6 agcacc 1
>mml-miR-764 MIMAT0012794 Macaca mulatta miR-764
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 6 agcacc 1
>dre-miR-2185-5p MIMAT0011289 Danio rerio miR-2185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 6 gcaccg 1
>bra-miR172b-5p MIMAT0010167 Brassica rapa miR172b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>bta-miR-764 MIMAT0009948 Bos taurus miR-764
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 6 agcacc 1
>cfa-miR-764 MIMAT0009937 Canis familiaris miR-764
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 6 agcacc 1
>bfl-miR-216-3p MIMAT0019150 Branchiostoma floridae miR-216-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 8 gcaccg 3
>bfl-miR-29b-3p MIMAT0009472 Branchiostoma floridae miR-29b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 1 agcacc 6
>gga-miR-1736-3p MIMAT0007639 Gallus gallus miR-1736-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 1 agcacc 6
>rno-miR-770-5p MIMAT0005338 Rattus norvegicus miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 1 agcacc 6
>smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 6 agcacc 1
>bta-miR-29a MIMAT0003518 Bos taurus miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>mmu-miR-764-5p MIMAT0003894 Mus musculus miR-764-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcacc 6
||||||
Sbjct: 6 agcacc 1
>mmu-miR-770-5p MIMAT0004822 Mus musculus miR-770-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 1 agcacc 6
>rlcv-miR-rL1-12-3p MIMAT0003442 Rhesus lymphocryptovirus
miR-rL1-12-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcaccg 7
||||||
Sbjct: 8 gcaccg 3
>mne-miR-29a MIMAT0002368 Macaca nemestrina miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>lla-miR-29a MIMAT0002367 Lagothrix lagotricha miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>sla-miR-29a MIMAT0002366 Saguinus labiatus miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>mml-miR-29a-3p MIMAT0002365 Macaca mulatta miR-29a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>ptr-miR-29a MIMAT0002364 Pan troglodytes miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>ppy-miR-29a MIMAT0002363 Pongo pygmaeus miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>ppa-miR-29a MIMAT0002362 Pan paniscus miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>age-miR-29a MIMAT0002361 Ateles geoffroyi miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>ggo-miR-29a MIMAT0002360 Gorilla gorilla miR-29a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>kshv-miR-K12-1-3p MIMAT0015214 Kaposi sarcoma-associated
miR-K12-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>ptc-miR172h-5p MIMAT0022906 Populus trichocarpa miR172h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>osa-miR172d-5p MIMAT0022885 Oryza sativa miR172d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>ath-miR172e-5p MIMAT0031918 Arabidopsis thaliana miR172e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
>ath-miR172b-5p MIMAT0000204 Arabidopsis thaliana miR172b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcacc 6
||||||
Sbjct: 3 agcacc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 251
Number of extensions: 242
Number of successful extensions: 79
Number of sequences better than 100.0: 79
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 79
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
