BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-15
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-6402 MIMAT0025154 Mus musculus miR-6402 14 20
hco-miR-5924b MIMAT0023419 Haemonchus contortus miR-5924b 14 20
hco-miR-5924a-3p MIMAT0023404 Haemonchus contortus miR-5924a-3p 14 20
mmu-miR-5626-3p MIMAT0022382 Mus musculus miR-5626-3p 14 20
gga-miR-1796 MIMAT0007710 Gallus gallus miR-1796 14 20
cin-miR-34-3p MIMAT0015252 Ciona intestinalis miR-34-3p 14 20
chi-miR-93-3p MIMAT0036306 Capra hircus miR-93-3p 12 80
gsa-miR-1992-3p MIMAT0035313 Gyrodactylus salaris miR-1992-3p 12 80
cfa-miR-8814 MIMAT0034304 Canis familiaris miR-8814 12 80
ppc-miR-8245b-5p MIMAT0033186 Pristionchus pacificus miR-8245b-5p 12 80
ppc-miR-8254-3p MIMAT0032977 Pristionchus pacificus miR-8254-3p 12 80
cel-miR-8186-5p MIMAT0032785 Caenorhabditis elegans miR-8186-5p 12 80
bbe-miR-2066-3p MIMAT0031629 Branchiostoma belcheri miR-2066-3p 12 80
mmu-miR-7680-3p MIMAT0029875 Mus musculus miR-7680-3p 12 80
crm-miR-1824 MIMAT0029642 Caenorhabditis remanei miR-1824 12 80
lja-miR7522 MIMAT0029337 Lotus japonicus miR7522 12 80
mdo-miR-7373a-3p MIMAT0028793 Monodelphis domestica miR-7373a-3p 12 80
mdo-miR-449c-3p MIMAT0028581 Monodelphis domestica miR-449c-3p 12 80
mmu-miR-7230-5p MIMAT0028428 Mus musculus miR-7230-5p 12 80
mmu-miR-7024-3p MIMAT0027953 Mus musculus miR-7024-3p 12 80
hsa-miR-6499-3p MIMAT0025451 Homo sapiens miR-6499-3p 12 80
cgr-miR-93-3p MIMAT0024014 Cricetulus griseus miR-93-3p 12 80
cin-miR-5609-5p MIMAT0022345 Ciona intestinalis miR-5609-5p 12 80
hsa-miR-548av-3p MIMAT0022304 Homo sapiens miR-548av-3p 12 80
hsa-miR-548au-3p MIMAT0022292 Homo sapiens miR-548au-3p 12 80
bfl-miR-4883 MIMAT0020469 Branchiostoma floridae miR-4883 12 80
pma-miR-4625 MIMAT0019659 Petromyzon marinus miR-4625 12 80
pma-miR-18b-3p MIMAT0019390 Petromyzon marinus miR-18b-3p 12 80
tca-miR-3896-3p MIMAT0018895 Tribolium castaneum miR-3896-3p 12 80
ame-miR-3780 MIMAT0018558 Apis mellifera miR-3780 12 80
hsa-miR-4277 MIMAT0016908 Homo sapiens miR-4277 12 80
rno-miR-3575 MIMAT0017861 Rattus norvegicus miR-3575 12 80
mmu-miR-3105-3p MIMAT0014942 Mus musculus miR-3105-3p 12 80
api-miR-3055 MIMAT0014798 Acyrthosiphon pisum miR-3055 12 80
zma-miR399h-5p MIMAT0015357 Zea mays miR399h-5p 12 80
bmo-miR-2723 MIMAT0012599 Bombyx mori miR-2723 12 80
cel-miR-2208a-3p MIMAT0011428 Caenorhabditis elegans miR-2208a-3p 12 80
sme-miR-1992-3p MIMAT0011243 Schmidtea mediterranea miR-1992-3p 12 80
lgi-miR-1992 MIMAT0009722 Lottia gigantea miR-1992 12 80
cla-miR-1992 MIMAT0009713 Cerebratulus lacteus miR-1992 12 80
cte-miR-1992 MIMAT0009700 Capitella teleta miR-1992 12 80
osa-miR1847.1 MIMAT0007766 Oryza sativa miR1847.1 12 80
gga-miR-1731-3p MIMAT0026780 Gallus gallus miR-1731-3p 12 80
oan-miR-1422j-3p MIMAT0007093 Ornithorhynchus anatinus miR-1422j-3p 12 80
oan-miR-1422i-3p MIMAT0006894 Ornithorhynchus anatinus miR-1422i-3p 12 80
mcmv-miR-m59-1 MIMAT0005548 Mouse cytomegalovirus miR-m59-1 12 80
rno-miR-883-3p MIMAT0005290 Rattus norvegicus miR-883-3p 12 80
smo-miR1113 MIMAT0005271 Selaginella moellendorffii miR1113 12 80
mmu-miR-883b-3p MIMAT0004851 Mus musculus miR-883b-3p 12 80
mmu-miR-883a-3p MIMAT0004849 Mus musculus miR-883a-3p 12 80
mdo-miR-93-3p MIMAT0026715 Monodelphis domestica miR-93-3p 12 80
mml-miR-93-3p MIMAT0026602 Macaca mulatta miR-93-3p 12 80
rno-miR-93-3p MIMAT0017109 Rattus norvegicus miR-93-3p 12 80
mmu-miR-93-3p MIMAT0004636 Mus musculus miR-93-3p 12 80
hsa-miR-93-3p MIMAT0004509 Homo sapiens miR-93-3p 12 80
cel-miR-49-5p MIMAT0020309 Caenorhabditis elegans miR-49-5p 12 80
>mmu-miR-6402 MIMAT0025154 Mus musculus miR-6402
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcagtt 7
|||||||
Sbjct: 2 agcagtt 8
>hco-miR-5924b MIMAT0023419 Haemonchus contortus miR-5924b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcagtt 7
|||||||
Sbjct: 7 agcagtt 1
>hco-miR-5924a-3p MIMAT0023404 Haemonchus contortus miR-5924a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcagtt 7
|||||||
Sbjct: 7 agcagtt 1
>mmu-miR-5626-3p MIMAT0022382 Mus musculus miR-5626-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcagtt 7
|||||||
Sbjct: 2 agcagtt 8
>gga-miR-1796 MIMAT0007710 Gallus gallus miR-1796
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcagtt 7
|||||||
Sbjct: 8 agcagtt 2
>cin-miR-34-3p MIMAT0015252 Ciona intestinalis miR-34-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcagtt 7
|||||||
Sbjct: 7 agcagtt 1
>chi-miR-93-3p MIMAT0036306 Capra hircus miR-93-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>gsa-miR-1992-3p MIMAT0035313 Gyrodactylus salaris miR-1992-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 3 agcagt 8
>cfa-miR-8814 MIMAT0034304 Canis familiaris miR-8814
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 3 agcagt 8
>ppc-miR-8245b-5p MIMAT0033186 Pristionchus pacificus
miR-8245b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 8 agcagt 3
>ppc-miR-8254-3p MIMAT0032977 Pristionchus pacificus miR-8254-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcagtt 7
||||||
Sbjct: 3 gcagtt 8
>cel-miR-8186-5p MIMAT0032785 Caenorhabditis elegans miR-8186-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>bbe-miR-2066-3p MIMAT0031629 Branchiostoma belcheri miR-2066-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>mmu-miR-7680-3p MIMAT0029875 Mus musculus miR-7680-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>crm-miR-1824 MIMAT0029642 Caenorhabditis remanei miR-1824
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcagtt 7
||||||
Sbjct: 3 gcagtt 8
>lja-miR7522 MIMAT0029337 Lotus japonicus miR7522
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcagtt 7
||||||
Sbjct: 6 gcagtt 1
>mdo-miR-7373a-3p MIMAT0028793 Monodelphis domestica
miR-7373a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>mdo-miR-449c-3p MIMAT0028581 Monodelphis domestica miR-449c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcagtt 7
||||||
Sbjct: 6 gcagtt 1
>mmu-miR-7230-5p MIMAT0028428 Mus musculus miR-7230-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 8 agcagt 3
>mmu-miR-7024-3p MIMAT0027953 Mus musculus miR-7024-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 3 agcagt 8
>hsa-miR-6499-3p MIMAT0025451 Homo sapiens miR-6499-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 1 agcagt 6
>cgr-miR-93-3p MIMAT0024014 Cricetulus griseus miR-93-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>cin-miR-5609-5p MIMAT0022345 Ciona intestinalis miR-5609-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 1 agcagt 6
>hsa-miR-548av-3p MIMAT0022304 Homo sapiens miR-548av-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcagtt 7
||||||
Sbjct: 8 gcagtt 3
>hsa-miR-548au-3p MIMAT0022292 Homo sapiens miR-548au-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcagtt 7
||||||
Sbjct: 3 gcagtt 8
>bfl-miR-4883 MIMAT0020469 Branchiostoma floridae miR-4883
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>pma-miR-4625 MIMAT0019659 Petromyzon marinus miR-4625
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>pma-miR-18b-3p MIMAT0019390 Petromyzon marinus miR-18b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>tca-miR-3896-3p MIMAT0018895 Tribolium castaneum miR-3896-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcagtt 7
||||||
Sbjct: 6 gcagtt 1
>ame-miR-3780 MIMAT0018558 Apis mellifera miR-3780
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcagtt 7
||||||
Sbjct: 6 gcagtt 1
>hsa-miR-4277 MIMAT0016908 Homo sapiens miR-4277
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcagtt 7
||||||
Sbjct: 1 gcagtt 6
>rno-miR-3575 MIMAT0017861 Rattus norvegicus miR-3575
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>mmu-miR-3105-3p MIMAT0014942 Mus musculus miR-3105-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>api-miR-3055 MIMAT0014798 Acyrthosiphon pisum miR-3055
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcagtt 7
||||||
Sbjct: 1 gcagtt 6
>zma-miR399h-5p MIMAT0015357 Zea mays miR399h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcagtt 7
||||||
Sbjct: 3 gcagtt 8
>bmo-miR-2723 MIMAT0012599 Bombyx mori miR-2723
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 3 agcagt 8
>cel-miR-2208a-3p MIMAT0011428 Caenorhabditis elegans
miR-2208a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcagtt 7
||||||
Sbjct: 3 gcagtt 8
>sme-miR-1992-3p MIMAT0011243 Schmidtea mediterranea miR-1992-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 3 agcagt 8
>lgi-miR-1992 MIMAT0009722 Lottia gigantea miR-1992
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 3 agcagt 8
>cla-miR-1992 MIMAT0009713 Cerebratulus lacteus miR-1992
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 3 agcagt 8
>cte-miR-1992 MIMAT0009700 Capitella teleta miR-1992
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 3 agcagt 8
>osa-miR1847.1 MIMAT0007766 Oryza sativa miR1847.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcagtt 7
||||||
Sbjct: 2 gcagtt 7
>gga-miR-1731-3p MIMAT0026780 Gallus gallus miR-1731-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcagtt 7
||||||
Sbjct: 3 gcagtt 8
>oan-miR-1422j-3p MIMAT0007093 Ornithorhynchus anatinus
miR-1422j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcagtt 7
||||||
Sbjct: 8 gcagtt 3
>oan-miR-1422i-3p MIMAT0006894 Ornithorhynchus anatinus
miR-1422i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcagtt 7
||||||
Sbjct: 8 gcagtt 3
>mcmv-miR-m59-1 MIMAT0005548 Mouse cytomegalovirus miR-m59-1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 3 agcagt 8
>rno-miR-883-3p MIMAT0005290 Rattus norvegicus miR-883-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcagtt 7
||||||
Sbjct: 7 gcagtt 2
>smo-miR1113 MIMAT0005271 Selaginella moellendorffii miR1113
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcagt 6
||||||
Sbjct: 3 agcagt 8
>mmu-miR-883b-3p MIMAT0004851 Mus musculus miR-883b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcagtt 7
||||||
Sbjct: 7 gcagtt 2
>mmu-miR-883a-3p MIMAT0004849 Mus musculus miR-883a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcagtt 7
||||||
Sbjct: 7 gcagtt 2
>mdo-miR-93-3p MIMAT0026715 Monodelphis domestica miR-93-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>mml-miR-93-3p MIMAT0026602 Macaca mulatta miR-93-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>rno-miR-93-3p MIMAT0017109 Rattus norvegicus miR-93-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>mmu-miR-93-3p MIMAT0004636 Mus musculus miR-93-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>hsa-miR-93-3p MIMAT0004509 Homo sapiens miR-93-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcagt 6
||||||
Sbjct: 6 agcagt 1
>cel-miR-49-5p MIMAT0020309 Caenorhabditis elegans miR-49-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcagtt 7
||||||
Sbjct: 2 gcagtt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 87
Number of extensions: 81
Number of successful extensions: 56
Number of sequences better than 100.0: 56
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 56
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
