BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prv-miR-10-1
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hsa-miR-4763-5p MIMAT0019912 Homo sapiens miR-4763-5p                  14      27
ppy-miR-596 MIMAT0016038 Pongo pygmaeus miR-596                        14      27
tgu-miR-2984-5p MIMAT0014494 Taeniopygia guttata miR-2984-5p           14      27
zma-miR169q-3p MIMAT0015328 Zea mays miR169q-3p                        14      27
zma-miR169n-3p MIMAT0015325 Zea mays miR169n-3p                        14      27
ptr-miR-596 MIMAT0012807 Pan troglodytes miR-596                       14      27
bta-miR-2353 MIMAT0011889 Bos taurus miR-2353                          14      27
gga-miR-1556 MIMAT0007413 Gallus gallus miR-1556                       14      27
hsa-miR-596 MIMAT0003264 Homo sapiens miR-596                          14      27
>hsa-miR-4763-5p MIMAT0019912 Homo sapiens miR-4763-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gcctgcc 8
         |||||||
Sbjct: 2 gcctgcc 8
>ppy-miR-596 MIMAT0016038 Pongo pygmaeus miR-596
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agcctgc 7
         |||||||
Sbjct: 2 agcctgc 8
>tgu-miR-2984-5p MIMAT0014494 Taeniopygia guttata miR-2984-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agcctgc 7
         |||||||
Sbjct: 1 agcctgc 7
>zma-miR169q-3p MIMAT0015328 Zea mays miR169q-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gcctgcc 8
         |||||||
Sbjct: 7 gcctgcc 1
>zma-miR169n-3p MIMAT0015325 Zea mays miR169n-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gcctgcc 8
         |||||||
Sbjct: 7 gcctgcc 1
>ptr-miR-596 MIMAT0012807 Pan troglodytes miR-596
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agcctgc 7
         |||||||
Sbjct: 2 agcctgc 8
>bta-miR-2353 MIMAT0011889 Bos taurus miR-2353
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agcctgc 7
         |||||||
Sbjct: 2 agcctgc 8
>gga-miR-1556 MIMAT0007413 Gallus gallus miR-1556
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agcctgc 7
         |||||||
Sbjct: 8 agcctgc 2
>hsa-miR-596 MIMAT0003264 Homo sapiens miR-596
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agcctgc 7
         |||||||
Sbjct: 2 agcctgc 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 158
Number of extensions: 149
Number of successful extensions: 112
Number of sequences better than 100.0: 9
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)