BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m95-1-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mcmv-miR-M95-1-3p MIMAT0005554 Mouse cytomegalovirus miR-M95-1-3p 16 6.9
ame-miR-9881 MIMAT0037285 Apis mellifera miR-9881 14 27
cfa-miR-8830 MIMAT0034323 Canis familiaris miR-8830 14 27
ppc-miR-8316-5p MIMAT0033169 Pristionchus pacificus miR-8316-5p 14 27
sbi-miR5386 MIMAT0021684 Sorghum bicolor miR5386 14 27
pma-miR-4600 MIMAT0019634 Petromyzon marinus miR-4600 14 27
pma-miR-4588 MIMAT0019621 Petromyzon marinus miR-4588 14 27
bmo-miR-3284 MIMAT0015470 Bombyx mori miR-3284 14 27
>mcmv-miR-M95-1-3p MIMAT0005554 Mouse cytomegalovirus
miR-M95-1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agcgacgt 8
||||||||
Sbjct: 1 agcgacgt 8
>ame-miR-9881 MIMAT0037285 Apis mellifera miR-9881
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcgacgt 8
|||||||
Sbjct: 8 gcgacgt 2
>cfa-miR-8830 MIMAT0034323 Canis familiaris miR-8830
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcgacg 7
|||||||
Sbjct: 8 agcgacg 2
>ppc-miR-8316-5p MIMAT0033169 Pristionchus pacificus miR-8316-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcgacgt 8
|||||||
Sbjct: 2 gcgacgt 8
>sbi-miR5386 MIMAT0021684 Sorghum bicolor miR5386
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcgacg 7
|||||||
Sbjct: 7 agcgacg 1
>pma-miR-4600 MIMAT0019634 Petromyzon marinus miR-4600
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcgacgt 8
|||||||
Sbjct: 8 gcgacgt 2
>pma-miR-4588 MIMAT0019621 Petromyzon marinus miR-4588
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcgacg 7
|||||||
Sbjct: 7 agcgacg 1
>bmo-miR-3284 MIMAT0015470 Bombyx mori miR-3284
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcgacgt 8
|||||||
Sbjct: 8 gcgacgt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 35
Number of successful extensions: 26
Number of sequences better than 100.0: 8
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
