BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-7
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oan-miR-7414-5p MIMAT0028976 Ornithorhynchus anatinus miR-7414-5p 14 20
ppy-miR-518g-3p MIMAT0036451 Pongo pygmaeus miR-518g-3p 12 80
ggo-miR-518e-3p MIMAT0036428 Gorilla gorilla miR-518e-3p 12 80
tae-miR5384-3p MIMAT0035797 Triticum aestivum miR5384-3p 12 80
efu-miR-339 MIMAT0035189 Eptesicus fuscus miR-339 12 80
ssa-miR-8161-3p MIMAT0032749 Salmo salar miR-8161-3p 12 80
oan-miR-7418-3p MIMAT0028985 Ornithorhynchus anatinus miR-7418-3p 12 80
mml-miR-7190-3p MIMAT0028339 Macaca mulatta miR-7190-3p 12 80
gga-miR-6546-5p MIMAT0025595 Gallus gallus miR-6546-5p 12 80
mml-miR-518d-3p MIMAT0027121 Macaca mulatta miR-518d-3p 12 80
ggo-miR-339 MIMAT0024161 Gorilla gorilla miR-339 12 80
hco-miR-5911a MIMAT0023367 Haemonchus contortus miR-5911a 12 80
cel-miR-4812-5p MIMAT0019998 Caenorhabditis elegans miR-4812-5p 12 80
osa-miR3982-5p MIMAT0019686 Oryza sativa miR3982-5p 12 80
cin-miR-4169-3p MIMAT0016777 Ciona intestinalis miR-4169-3p 12 80
ppy-miR-518e MIMAT0015957 Pongo pygmaeus miR-518e 12 80
mmu-miR-3081-3p MIMAT0014871 Mus musculus miR-3081-3p 12 80
zma-miR397b-3p MIMAT0015353 Zea mays miR397b-3p 12 80
ptr-miR-518e MIMAT0008190 Pan troglodytes miR-518e 12 80
ptr-miR-339 MIMAT0008107 Pan troglodytes miR-339 12 80
mml-miR-518f MIMAT0006383 Macaca mulatta miR-518f 12 80
mml-miR-504-3p MIMAT0026891 Macaca mulatta miR-504-3p 12 80
mml-miR-339-3p MIMAT0006280 Macaca mulatta miR-339-3p 12 80
gga-miR-1765 MIMAT0007673 Gallus gallus miR-1765 12 80
gga-miR-1466 MIMAT0007344 Gallus gallus miR-1466 12 80
cre-miR1163.1 MIMAT0005418 Chlamydomonas reinhardtii miR1163.1 12 80
sme-miR-124c-1-5p MIMAT0003994 Schmidtea mediterranea miR-124c-1-5p 12 80
hsa-miR-518e-3p MIMAT0002861 Homo sapiens miR-518e-3p 12 80
hsa-miR-339-3p MIMAT0004702 Homo sapiens miR-339-3p 12 80
mmu-miR-339-3p MIMAT0004649 Mus musculus miR-339-3p 12 80
rno-miR-339-3p MIMAT0004648 Rattus norvegicus miR-339-3p 12 80
>oan-miR-7414-5p MIMAT0028976 Ornithorhynchus anatinus
miR-7414-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcgctc 7
|||||||
Sbjct: 8 agcgctc 2
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
>ppy-miR-518g-3p MIMAT0036451 Pongo pygmaeus miR-518g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgct 6
||||||
Sbjct: 8 agcgct 3
>ggo-miR-518e-3p MIMAT0036428 Gorilla gorilla miR-518e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgct 6
||||||
Sbjct: 8 agcgct 3
>tae-miR5384-3p MIMAT0035797 Triticum aestivum miR5384-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 7 gcgctc 2
>efu-miR-339 MIMAT0035189 Eptesicus fuscus miR-339
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 7 gcgctc 2
>ssa-miR-8161-3p MIMAT0032749 Salmo salar miR-8161-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgct 6
||||||
Sbjct: 8 agcgct 3
>oan-miR-7418-3p MIMAT0028985 Ornithorhynchus anatinus
miR-7418-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 8 gcgctc 3
>mml-miR-7190-3p MIMAT0028339 Macaca mulatta miR-7190-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgctc 7
||||||
Sbjct: 1 gcgctc 6
>gga-miR-6546-5p MIMAT0025595 Gallus gallus miR-6546-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 8 gcgctc 3
>mml-miR-518d-3p MIMAT0027121 Macaca mulatta miR-518d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgct 6
||||||
Sbjct: 8 agcgct 3
>ggo-miR-339 MIMAT0024161 Gorilla gorilla miR-339
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 7 gcgctc 2
>hco-miR-5911a MIMAT0023367 Haemonchus contortus miR-5911a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgct 6
||||||
Sbjct: 8 agcgct 3
>cel-miR-4812-5p MIMAT0019998 Caenorhabditis elegans miR-4812-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 8 gcgctc 3
>osa-miR3982-5p MIMAT0019686 Oryza sativa miR3982-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgctc 7
||||||
Sbjct: 1 gcgctc 6
>cin-miR-4169-3p MIMAT0016777 Ciona intestinalis miR-4169-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 6 gcgctc 1
>ppy-miR-518e MIMAT0015957 Pongo pygmaeus miR-518e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgct 6
||||||
Sbjct: 8 agcgct 3
>mmu-miR-3081-3p MIMAT0014871 Mus musculus miR-3081-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgctc 7
||||||
Sbjct: 3 gcgctc 8
>zma-miR397b-3p MIMAT0015353 Zea mays miR397b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgct 6
||||||
Sbjct: 8 agcgct 3
>ptr-miR-518e MIMAT0008190 Pan troglodytes miR-518e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgct 6
||||||
Sbjct: 8 agcgct 3
>ptr-miR-339 MIMAT0008107 Pan troglodytes miR-339
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 7 gcgctc 2
>mml-miR-518f MIMAT0006383 Macaca mulatta miR-518f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgct 6
||||||
Sbjct: 8 agcgct 3
>mml-miR-504-3p MIMAT0026891 Macaca mulatta miR-504-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 8 gcgctc 3
>mml-miR-339-3p MIMAT0006280 Macaca mulatta miR-339-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 7 gcgctc 2
>gga-miR-1765 MIMAT0007673 Gallus gallus miR-1765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 8 gcgctc 3
>gga-miR-1466 MIMAT0007344 Gallus gallus miR-1466
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgctc 7
||||||
Sbjct: 1 gcgctc 6
>cre-miR1163.1 MIMAT0005418 Chlamydomonas reinhardtii miR1163.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 8 gcgctc 3
>sme-miR-124c-1-5p MIMAT0003994 Schmidtea mediterranea
miR-124c-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgctc 7
||||||
Sbjct: 1 gcgctc 6
>hsa-miR-518e-3p MIMAT0002861 Homo sapiens miR-518e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgct 6
||||||
Sbjct: 3 agcgct 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgct 6
||||||
Sbjct: 8 agcgct 3
>hsa-miR-339-3p MIMAT0004702 Homo sapiens miR-339-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 7 gcgctc 2
>mmu-miR-339-3p MIMAT0004649 Mus musculus miR-339-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 7 gcgctc 2
>rno-miR-339-3p MIMAT0004648 Rattus norvegicus miR-339-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgctc 7
||||||
Sbjct: 7 gcgctc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 48
Number of extensions: 47
Number of successful extensions: 42
Number of sequences better than 100.0: 31
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 42
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
